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Items: 37

1.

Dynamics of lentiviral infection in vivo in the absence of adaptive immune responses.

Schwartz EJ, Vaidya NK, Dorman KS, Carpenter S, Mealey RH.

Virology. 2018 Jan 1;513:108-113. doi: 10.1016/j.virol.2017.09.023. Epub 2017 Oct 19.

2.

Identification of a homogenous structural basis for oligomerization by retroviral Rev-like proteins.

Umunnakwe CN, Dorman KS, Dobbs D, Carpenter S.

Retrovirology. 2017 Aug 22;14(1):40. doi: 10.1186/s12977-017-0366-1.

3.

The genomic evolution of H1 influenza A viruses from swine detected in the United States between 2009 and 2016.

Gao S, Anderson TK, Walia RR, Dorman KS, Janas-Martindale A, Vincent AL.

J Gen Virol. 2017 Aug;98(8):2001-2010. doi: 10.1099/jgv.0.000885. Epub 2017 Jul 31.

4.

Complete genome sequence of T'Ho virus, a novel putative flavivirus from the Yucatan Peninsula of Mexico.

Briese T, Loroño-Pino MA, Garcia-Rejon JE, Farfan-Ale JA, Machain-Williams C, Dorman KS, Lipkin WI, Blitvich BJ.

Virol J. 2017 Jun 12;14(1):110. doi: 10.1186/s12985-017-0777-6.

5.

Hematologic RIs for healthy water buffaloes (Bubalus bubalis) in southern Mexico.

Torres-Chable OM, Ojeda-Robertos NF, Chay-Canul AJ, Peralta-Torres JA, Luna-Palomera C, Brindis-Vazquez N, Blitvich BJ, Machain-Williams C, Garcia-Rejon JE, Baak-Baak CM, Dorman KS, Alegria-Lopez MA.

Vet Clin Pathol. 2017 Sep;46(3):436-441. doi: 10.1111/vcp.12508. Epub 2017 Jun 5.

PMID:
28582601
6.

Antigenic and Biological Characterization of ORF2-6 Variants at Early Times Following PRRSV Infection.

Evans AB, Loyd H, Dunkelberger JR, van Tol S, Bolton MJ, Dorman KS, Dekkers JCM, Carpenter S.

Viruses. 2017 May 16;9(5). pii: E113. doi: 10.3390/v9050113.

7.

Nucleotide sequencing and serologic analysis of Cache Valley virus isolates from the Yucatan Peninsula of Mexico.

Blitvich BJ, Loroño-Pino MA, Garcia-Rejon JE, Farfan-Ale JA, Dorman KS.

Virus Genes. 2012 Aug;45(1):176-80. doi: 10.1007/s11262-012-0741-x. Epub 2012 Mar 31.

PMID:
22467180
8.

Identification of a novel subtype of South River virus (family Bunyaviridae).

Blitvich BJ, Staley M, Loroño-Pino MA, Garcia-Rejon JE, Farfan-Ale JA, Dorman KS.

Arch Virol. 2012 Jun;157(6):1205-9. doi: 10.1007/s00705-012-1280-4. Epub 2012 Mar 14.

9.

Sequence and phylogenetic data indicate that an orthobunyavirus recently detected in the Yucatan Peninsula of Mexico is a novel reassortant of Potosi and Cache Valley viruses.

Blitvich BJ, Saiyasombat R, Dorman KS, Garcia-Rejon JE, Farfan-Ale JA, Loroño-Pino MA.

Arch Virol. 2012 Jun;157(6):1199-204. doi: 10.1007/s00705-012-1279-x. Epub 2012 Mar 10.

PMID:
22407405
10.

Rev variation during persistent lentivirus infection.

Carpenter S, Chen WC, Dorman KS.

Viruses. 2011 Jan;3(1):1-11. doi: 10.3390/v3010001. Epub 2011 Jan 11. Review.

11.

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL.

J Bacteriol. 2011 Oct;193(19):5450-64. doi: 10.1128/JB.05262-11. Epub 2011 Jul 22.

12.

Decreased infectivity of a neutralization-resistant equine infectious anemia virus variant can be overcome by efficient cell-to-cell spread.

Wu W, Blythe DC, Loyd H, Mealey RH, Tallmadge RL, Dorman KS, Carpenter S.

J Virol. 2011 Oct;85(19):10421-4. doi: 10.1128/JVI.05349-11. Epub 2011 Jul 13.

13.

Repeat-aware modeling and correction of short read errors.

Yang X, Aluru S, Dorman KS.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S52. doi: 10.1186/1471-2105-12-S1-S52.

14.

Reptile: representative tiling for short read error correction.

Yang X, Dorman KS, Aluru S.

Bioinformatics. 2010 Oct 15;26(20):2526-33. doi: 10.1093/bioinformatics/btq468. Epub 2010 Aug 16.

PMID:
20834037
15.

Universal primers for the amplification and sequence analysis of actin-1 from diverse mosquito species.

Staley M, Dorman KS, Bartholomay LC, Fernández-Salas I, Farfan-Ale JA, Loroño-Pino MA, Garcia-Rejon JE, Ibarra-Juarez L, Blitvich BJ.

J Am Mosq Control Assoc. 2010 Jun;26(2):214-8.

16.

Isolation and sequence analysis of Culex flavivirus from Culex interrogator and Culex quinquefasciatus in the Yucatan Peninsula of Mexico.

Saiyasombat R, Dorman KS, Garcia-Rejon JE, Loroño-Pino MA, Farfan-Ale JA, Blitvich BJ.

Arch Virol. 2010 Jun;155(6):983-6. doi: 10.1007/s00705-010-0665-5. Epub 2010 Apr 9.

17.

Detection of flaviviruses and orthobunyaviruses in mosquitoes in the Yucatan Peninsula of Mexico in 2008.

Farfan-Ale JA, Loroño-Pino MA, Garcia-Rejon JE, Soto V, Lin M, Staley M, Dorman KS, Bartholomay LC, Hovav E, Blitvich BJ.

Vector Borne Zoonotic Dis. 2010 Oct;10(8):777-83. doi: 10.1089/vbz.2009.0196. Epub 2010 Apr 6.

18.

Parameter estimation and sensitivity analysis in an agent-based model of Leishmania major infection.

Dancik GM, Jones DE, Dorman KS.

J Theor Biol. 2010 Feb 7;262(3):398-412. doi: 10.1016/j.jtbi.2009.10.007. Epub 2009 Oct 23.

19.

Complete nucleotide sequences of the small and medium RNA genome segments of Kairi virus (family Bunyaviridae).

Soto V, Dorman KS, Miller WA, Farfan-Ale JA, Loroño-Pino MA, Garcia-Rejon JE, Blitvich BJ.

Arch Virol. 2009;154(9):1555-8. doi: 10.1007/s00705-009-0465-y. Epub 2009 Aug 2.

20.

Genomic sequence and phylogenetic analysis of Culex flavivirus, an insect-specific flavivirus, isolated from Culex pipiens (Diptera: Culicidae) in Iowa.

Blitvich BJ, Lin M, Dorman KS, Soto V, Hovav E, Tucker BJ, Staley M, Platt KB, Bartholomay LC.

J Med Entomol. 2009 Jul;46(4):934-41.

21.

Detection of RNA from a novel West Nile-like virus and high prevalence of an insect-specific flavivirus in mosquitoes in the Yucatan Peninsula of Mexico.

Farfan-Ale JA, Loroño-Pino MA, Garcia-Rejon JE, Hovav E, Powers AM, Lin M, Dorman KS, Platt KB, Bartholomay LC, Soto V, Beaty BJ, Lanciotti RS, Blitvich BJ.

Am J Trop Med Hyg. 2009 Jan;80(1):85-95.

22.

mlegp: statistical analysis for computer models of biological systems using R.

Dancik GM, Dorman KS.

Bioinformatics. 2008 Sep 1;24(17):1966-7. doi: 10.1093/bioinformatics/btn329. Epub 2008 Jul 17.

23.

StepBrothers: inferring partially shared ancestries among recombinant viral sequences.

Bloomquist EW, Dorman KS, Suchard MA.

Biostatistics. 2009 Jan;10(1):106-20. doi: 10.1093/biostatistics/kxn019. Epub 2008 Jun 18.

24.

Naturally arising point mutations in non-essential domains of equine infectious anemia virus Rev alter Rev-dependent nuclear-export activity.

Sparks WO, Dorman KS, Liu S, Carpenter S.

J Gen Virol. 2008 Apr;89(Pt 4):1043-8. doi: 10.1099/vir.0.83195-0.

25.

Molecular cloning and sequencing of MHC class II beta 1 domain of turkey reveals high sequence identity with chicken.

Ahmed KA, Saxena VK, Saxena M, Ara A, Pramod AB, Rajaram ML, Dorman KS, Majumdar S, Rasool TJ.

Int J Immunogenet. 2007 Apr;34(2):97-105.

PMID:
17373934
26.

Identifying dramatic selection shifts in phylogenetic trees.

Dorman KS.

BMC Evol Biol. 2007 Feb 8;7 Suppl 1:S10.

27.

Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes.

Minin VN, Dorman KS, Fang F, Suchard MA.

Genetics. 2007 Apr;175(4):1773-85. Epub 2006 Dec 28.

28.

cBrother: relaxing parental tree assumptions for Bayesian recombination detection.

Fang F, Ding J, Minin VN, Suchard MA, Dorman KS.

Bioinformatics. 2007 Feb 15;23(4):507-8. Epub 2006 Dec 4.

PMID:
17145740
29.

Quantitative exposure assessment for confinement of maize biogenic systems.

Wolt JD, Shyy YY, Christensen PJ, Dorman KS, Misra M.

Environ Biosafety Res. 2004 Oct-Dec;3(4):183-96.

30.

Dual multiple change-point model leads to more accurate recombination detection.

Minin VN, Dorman KS, Fang F, Suchard MA.

Bioinformatics. 2005 Jul 1;21(13):3034-42. Epub 2005 May 24.

PMID:
15914546
31.

Are you my mother? Bayesian phylogenetic inference of recombination among putative parental strains.

Sinsheimer JS, Suchard MA, Dorman KS, Fang F, Weiss RE.

Appl Bioinformatics. 2003;2(3):131-44. Review.

PMID:
15130798
32.

Subpopulations of equine infectious anemia virus Rev coexist in vivo and differ in phenotype.

Baccam P, Thompson RJ, Li Y, Sparks WO, Belshan M, Dorman KS, Wannemuehler Y, Oaks JL, Cornette JL, Carpenter S.

J Virol. 2003 Nov;77(22):12122-31.

33.

Oh brother, where art thou? A Bayes factor test for recombination with uncertain heritage.

Suchard MA, Weiss RE, Dorman KS, Sinsheimer JS.

Syst Biol. 2002 Oct;51(5):715-28.

PMID:
12396586
34.

Bootstrap confidence levels for HIV-1 recombination.

Dorman KS, Kaplan AH, Sinsheimer JS.

J Mol Evol. 2002 Feb;54(2):200-9.

PMID:
11821913
35.

Mutation takes no vacation: can structured treatment interruptions increase the risk of drug-resistant HIV-1?

Dorman KS, Kaplan AH, Lange K, Sinsheimer JS.

J Acquir Immune Defic Syndr. 2000 Dec 15;25(5):398-402.

PMID:
11141239
36.

Primate DAX1, SRY, and SOX9: evolutionary stratification of sex-determination pathway.

Patel M, Dorman KS, Zhang YH, Huang BL, Arnold AP, Sinsheimer JS, Vilain E, McCabe ER.

Am J Hum Genet. 2001 Jan;68(1):275-80. Epub 2000 Dec 7.

37.

[Molecular epidemiology of the human immunodeficiency virus type 1 in Santiago, Chile].

Pérez C, Vial P, Dorman KS, Wang G, Wang G, Abarca K, Sinsheimer JS, Kaplan AH.

Rev Med Chil. 1999 Nov;127(11):1294-304. Spanish.

PMID:
10835715

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