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Items: 1 to 50 of 52

1.

Structural Rearrangements Maintain the Glycan Shield of an HIV-1 Envelope Trimer After the Loss of a Glycan.

Ferreira RC, Grant OC, Moyo T, Dorfman JR, Woods RJ, Travers SA, Wood NT.

Sci Rep. 2018 Oct 9;8(1):15031. doi: 10.1038/s41598-018-33390-2.

2.

Molecular Basis of Unusually High Neutralization Resistance in Tier 3 HIV-1 Strain 253-11.

Moyo T, Ereño-Orbea J, Jacob RA, Pavillet CE, Kariuki SM, Tangie EN, Julien JP, Dorfman JR.

J Virol. 2018 Jun 29;92(14). pii: e02261-17. doi: 10.1128/JVI.02261-17. Print 2018 Jul 15.

3.

Unravelling the complicated evolutionary and dissemination history of HIV-1M subtype A lineages.

Tongo M, Harkins GW, Dorfman JR, Billings E, Tovanabutra S, de Oliveira T, Martin DP.

Virus Evol. 2018 Feb 19;4(1):vey003. doi: 10.1093/ve/vey003. eCollection 2018 Jan.

4.

A40 Persistent circulation of highly divergent HIV-1M lineages in the Congo Basin Region.

Tongo M, Dorfman JR, de Oliveira T, Martin DP.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.039. doi: 10.1093/ve/vew036.039. eCollection 2017 Mar. No abstract available.

5.

The HIV-1 transmission bottleneck.

Kariuki SM, Selhorst P, Ariën KK, Dorfman JR.

Retrovirology. 2017 Mar 23;14(1):22. doi: 10.1186/s12977-017-0343-8.

6.

Work, work fluctuations, and the work distribution in a thermal nonequilibrium steady state.

Kirkpatrick TR, Dorfman JR, Sengers JV.

Phys Rev E. 2016 Nov;94(5-1):052128. Epub 2016 Nov 17.

PMID:
27967150
7.

Chinks in the armor of the HIV-1 Envelope glycan shield: Implications for immune escape from anti-glycan broadly neutralizing antibodies.

Moyo T, Ferreira RC, Davids R, Sonday Z, Moore PL, Travers SA, Wood NT, Dorfman JR.

Virology. 2017 Jan 15;501:12-24. doi: 10.1016/j.virol.2016.10.026. Epub 2016 Nov 13.

8.
9.

Nonequilibrium is different.

Kirkpatrick TR, Dorfman JR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Aug;92(2):022109. Epub 2015 Aug 6.

PMID:
26382346
10.

Near full-length HIV type 1M genomic sequences from Cameroon : Evidence of early diverging under-sampled lineages in the country.

Tongo M, Dorfman JR, Abrahams MR, Mpoudi-Ngole E, Burgers WA, Martin DP.

Evol Med Public Health. 2015 Sep 9;2015(1):254-65. doi: 10.1093/emph/eov022.

11.

Phylogenetics of HIV-1 subtype G env: Greater complexity and older origins than previously reported.

Tongo M, Essomba RG, Nindo F, Abrahams F, Nanfack AJ, Fokam J, Takou D, Torimiro JN, Mpoudi-Ngole E, Burgers WA, Martin DP, Dorfman JR.

Infect Genet Evol. 2015 Oct;35:9-18. doi: 10.1016/j.meegid.2015.07.017. Epub 2015 Jul 17.

PMID:
26190450
12.

Incidence and risk factors for neonatal tetanus in admissions to Kilifi County Hospital, Kenya.

Ibinda F, Bauni E, Kariuki SM, Fegan G, Lewa J, Mwikamba M, Boga M, Odhiambo R, Mwagandi K, Seale AC, Berkley JA, Dorfman JR, Newton CR.

PLoS One. 2015 Apr 7;10(4):e0122606. doi: 10.1371/journal.pone.0122606. eCollection 2015.

13.

Anti-V3/Glycan and Anti-MPER Neutralizing Antibodies, but Not Anti-V2/Glycan Site Antibodies, Are Strongly Associated with Greater Anti-HIV-1 Neutralization Breadth and Potency.

Jacob RA, Moyo T, Schomaker M, Abrahams F, Grau Pujol B, Dorfman JR.

J Virol. 2015 May;89(10):5264-75. doi: 10.1128/JVI.00129-15. Epub 2015 Feb 11.

14.

Lower anti-HIV-1 neutralization in HIV-infected children with CD4+ T cell depletion: opposite correlation to that in adults.

Agthe M, Nemes E, Jacob RA, Abrahams F, Fainguem N, Tetang SM, Cappelli G, Colizzi V, Dorfman JR.

AIDS. 2014 Jul 17;28(11):1694-6. doi: 10.1097/QAD.0000000000000281. No abstract available.

PMID:
25232903
15.

Refined identification of neutralization-resistant HIV-1 CRF02_AG viruses.

Jacob RA, Abrahams F, Tongo M, Schomaker M, Roux P, Mpoudi Ngole E, Burgers WA, Dorfman JR.

J Virol. 2012 Jul;86(14):7699-703. doi: 10.1128/JVI.00804-12. Epub 2012 May 9.

16.

Variability and robustness in T cell activation from regulated heterogeneity in protein levels.

Feinerman O, Veiga J, Dorfman JR, Germain RN, Altan-Bonnet G.

Science. 2008 Aug 22;321(5892):1081-4. doi: 10.1126/science.1158013.

17.

VAR2CSA domains expressed in Escherichia coli induce cross-reactive antibodies to native protein.

Oleinikov AV, Francis SE, Dorfman JR, Rossnagle E, Balcaitis S, Getz T, Avril M, Gose S, Smith JD, Fried M, Duffy PE.

J Infect Dis. 2008 Apr 15;197(8):1119-23. doi: 10.1086/529526.

PMID:
18462161
18.

Wave packet autocorrelation functions for quantum hard-disk and hard-sphere billiards in the high-energy, diffraction regime.

Goussev A, Dorfman JR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jul;74(1 Pt 2):016204. Epub 2006 Jul 17.

PMID:
16907174
19.

Fluctuation theorem for constrained equilibrium systems.

Gilbert T, Dorfman JR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Feb;73(2 Pt 2):026121. Epub 2006 Feb 17.

PMID:
16605412
20.

B cell memory to 3 Plasmodium falciparum blood-stage antigens in a malaria-endemic area.

Dorfman JR, Bejon P, Ndungu FM, Langhorne J, Kortok MM, Lowe BS, Mwangi TW, Williams TN, Marsh K.

J Infect Dis. 2005 May 15;191(10):1623-30. Epub 2005 Apr 13.

PMID:
15838788
21.

Lyapunov spreading of semiclassical wave packets for the Lorentz gas: theory and applications.

Goussev A, Dorfman JR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Feb;71(2 Pt 2):026225. Epub 2005 Feb 9.

PMID:
15783405
22.

Iron deficiency and malaria among children living on the coast of Kenya.

Nyakeriga AM, Troye-Blomberg M, Dorfman JR, Alexander ND, Bäck R, Kortok M, Chemtai AK, Marsh K, Williams TN.

J Infect Dis. 2004 Aug 1;190(3):439-47. Epub 2004 Jul 2.

PMID:
15243915
23.

Turnover and proliferation of NK cells in steady state and lymphopenic conditions.

Jamieson AM, Isnard P, Dorfman JR, Coles MC, Raulet DH.

J Immunol. 2004 Jan 15;172(2):864-70.

24.

Diffusive-ballistic crossover in 1D quantum walks.

Wójcik DK, Dorfman JR.

Phys Rev Lett. 2003 Jun 13;90(23):230602. Epub 2003 Jun 13.

PMID:
12857245
25.

Bogoliubov-Born-Green-Kirkwood-Yvon hierarchy methods for sums of Lyapunov exponents for dilute gases.

Dorfman JR, Latz A, Van Beijeren H.

Chaos. 1998 Jun;8(2):444-454.

PMID:
12779747
26.

An analytical construction of the SRB measures for Baker-type maps.

Tasaki S, Gilbert T, Dorfman JR.

Chaos. 1998 Jun;8(2):424-443.

PMID:
12779746
27.

On the role of self-recognition in T cell responses to foreign antigen.

Stefanova I, Dorfman JR, Tsukamoto M, Germain RN.

Immunol Rev. 2003 Feb;191:97-106. Review.

PMID:
12614354
28.

Self-recognition promotes the foreign antigen sensitivity of naive T lymphocytes.

Stefanová I, Dorfman JR, Germain RN.

Nature. 2002 Nov 28;420(6914):429-34.

PMID:
12459785
29.

Quantum multibaker maps: extreme quantum regime.

Wójcik DK, Dorfman JR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Sep;66(3 Pt 2A):036110. Epub 2002 Sep 13.

PMID:
12366187
30.

Entropy production of diffusion in spatially periodic deterministic systems.

Dorfman JR, Gaspard P, Gilbert T.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Aug;66(2 Pt 2):026110. Epub 2002 Aug 19.

PMID:
12241240
31.

Simple deterministic dynamical systems with fractal diffusion coefficients.

Klages R, Dorfman JR.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 May;59(5 Pt A):5361-83.

PMID:
11969496
32.

MHC-dependent survival of naïve T cells? A complicated answer to a simple question.

Dorfman JR, Germain RN.

Microbes Infect. 2002 Apr;4(5):547-54. Review.

PMID:
11959510
33.

Response to 'Class II essential for CD4 survival'

Dorfman JR, Stefanová I I, Yasutomo K, Germain RN.

Nat Immunol. 2001 Feb;2(2):136-137. No abstract available.

PMID:
11175807
34.

Field-dependent collision frequency of the two-dimensional driven random Lorentz gas.

Dellago C, Beijeren H, Panja D, Dorfman JR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Sep;64(3 Pt 2):036217. Epub 2001 Aug 28.

PMID:
11580432
35.

Chaotic properties of dilute two- and three-dimensional random Lorentz gases. II. Open systems.

van Beijeren H, Latz A, Dorfman JR.

Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Jan;63(1 Pt 2):016312. Epub 2000 Dec 27.

PMID:
11304358
36.

Fractality of the hydrodynamic modes of diffusion.

Gaspard P, Claus I, Gilbert T, Dorfman JR.

Phys Rev Lett. 2001 Feb 19;86(8):1506-9.

PMID:
11290179
37.

CD4+ T cell survival is not directly linked to self-MHC-induced TCR signaling.

Dorfman JR, Stefanová I, Yasutomo K, Germain RN.

Nat Immunol. 2000 Oct;1(4):329-35.

PMID:
11017105
38.

Entropy production, fractals, and relaxation to equilibrium

Gilbert T, Dorfman JR, Gaspard P.

Phys Rev Lett. 2000 Aug 21;85(8):1606-9.

PMID:
10970569
39.

The basis for self-tolerance of natural killer cells in beta2-microglobulin- and TAP-1- mice.

Dorfman JR, Zerrahn J, Coles MC, Raulet DH.

J Immunol. 1997 Dec 1;159(11):5219-25.

PMID:
9548460
40.

Acquisition of Ly49 receptor expression by developing natural killer cells.

Dorfman JR, Raulet DH.

J Exp Med. 1998 Feb 16;187(4):609-18.

41.

Specificity, tolerance and developmental regulation of natural killer cells defined by expression of class I-specific Ly49 receptors.

Raulet DH, Held W, Correa I, Dorfman JR, Wu MF, Corral L.

Immunol Rev. 1997 Feb;155:41-52. Review.

PMID:
9059881
42.

Major histocompatibility complex class I-dependent skewing of the natural killer cell Ly49 receptor repertoire.

Held W, Dorfman JR, Wu MF, Raulet DH.

Eur J Immunol. 1996 Oct;26(10):2286-92. Erratum in: Eur J Immunol 1996 Dec;26(12):3242.

PMID:
8898935
43.

Lyapunov Exponents from Kinetic Theory for a Dilute, Field-Driven Lorentz Gas.

van Beijeren H, Dorfman JR, Cohen EG, Posch HA, Dellago C.

Phys Rev Lett. 1996 Sep 2;77(10):1974-1977. No abstract available.

PMID:
10061825
44.

Thermodynamic formalism in the thermodynamic limit: Diffusive systems with static disorder.

Appert C, van Beijeren H, Ernst MH, Dorfman JR.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1996 Aug;54(2):R1013-R1016. No abstract available.

PMID:
9965311
45.
46.

Major histocompatibility complex genes determine natural killer cell tolerance.

Dorfman JR, Raulet DH.

Eur J Immunol. 1996 Jan;26(1):151-5.

PMID:
8566058
47.

Chaotic scattering theory, thermodynamic formalism, and transport coefficients.

Gaspard P, Dorfman JR.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Oct;52(4):3525-3552. No abstract available.

PMID:
9963830
48.

Mean-field theory for Lyapunov exponents and Kolmogorov-Sinai entropy in Lorentz lattice gases.

Ernst MH, Dorfman JR, Nix R, Jacobs D.

Phys Rev Lett. 1995 May 29;74(22):4416-4419. No abstract available.

PMID:
10058501
49.

Lyapunov exponents and Kolmogorov-Sinai entropy for the Lorentz gas at low densities.

van Beijeren H, Dorfman JR.

Phys Rev Lett. 1995 May 29;74(22):4412-4415. No abstract available.

PMID:
10058500
50.

Simple maps with fractal diffusion coefficients.

Klages R, Dorfman JR.

Phys Rev Lett. 1995 Jan 16;74(3):387-390. No abstract available.

PMID:
10058745

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