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Items: 8

1.

The Microbiota of Freshwater Fish and Freshwater Niches Contain Omega-3 Fatty Acid-Producing Shewanella Species.

Dailey FE, McGraw JE, Jensen BJ, Bishop SS, Lokken JP, Dorff KJ, Ripley MP, Munro JB.

Appl Environ Microbiol. 2015 Oct 23;82(1):218-31. doi: 10.1128/AEM.02266-15. Print 2016 Jan 1.

2.

Role of secondary metabolites in establishment of the mutualistic partnership between Xenorhabdus nematophila and the entomopathogenic nematode Steinernema carpocapsae.

Singh S, Orr D, Divinagracia E, McGraw J, Dorff K, Forst S.

Appl Environ Microbiol. 2015 Jan;81(2):754-64. doi: 10.1128/AEM.02650-14. Epub 2014 Nov 14.

3.

Compression of structured high-throughput sequencing data.

Campagne F, Dorff KC, Chambwe N, Robinson JT, Mesirov JP.

PLoS One. 2013 Nov 18;8(11):e79871. doi: 10.1371/journal.pone.0079871. eCollection 2013.

4.

GobyWeb: simplified management and analysis of gene expression and DNA methylation sequencing data.

Dorff KC, Chambwe N, Zeno Z, Simi M, Shaknovich R, Campagne F.

PLoS One. 2013 Jul 23;8(7):e69666. doi: 10.1371/journal.pone.0069666. Print 2013.

5.

BDVal: reproducible large-scale predictive model development and validation in high-throughput datasets.

Dorff KC, Chambwe N, Srdanovic M, Campagne F.

Bioinformatics. 2010 Oct 1;26(19):2472-3. doi: 10.1093/bioinformatics/btq463. Epub 2010 Aug 11.

6.

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Huang J, Jensen RV, Jiang R, Johnson CD, Jurman G, Kahlert Y, Khuder SA, Kohl M, Li J, Li L, Li M, Li QZ, Li S, Li Z, Liu J, Liu Y, Liu Z, Meng L, Madera M, Martinez-Murillo F, Medina I, Meehan J, Miclaus K, Moffitt RA, Montaner D, Mukherjee P, Mulligan GJ, Neville P, Nikolskaya T, Ning B, Page GP, Parker J, Parry RM, Peng X, Peterson RL, Phan JH, Quanz B, Ren Y, Riccadonna S, Roter AH, Samuelson FW, Schumacher MM, Shambaugh JD, Shi Q, Shippy R, Si S, Smalter A, Sotiriou C, Soukup M, Staedtler F, Steiner G, Stokes TH, Sun Q, Tan PY, Tang R, Tezak Z, Thorn B, Tsyganova M, Turpaz Y, Vega SC, Visintainer R, von Frese J, Wang C, Wang E, Wang J, Wang W, Westermann F, Willey JC, Woods M, Wu S, Xiao N, Xu J, Xu L, Yang L, Zeng X, Zhang J, Zhang L, Zhang M, Zhao C, Puri RK, Scherf U, Tong W, Wolfinger RD; MAQC Consortium.

Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30.

7.

GPCR-OKB: the G Protein Coupled Receptor Oligomer Knowledge Base.

Khelashvili G, Dorff K, Shan J, Camacho-Artacho M, Skrabanek L, Vroling B, Bouvier M, Devi LA, George SR, Javitch JA, Lohse MJ, Milligan G, Neubig RR, Palczewski K, Parmentier M, Pin JP, Vriend G, Campagne F, Filizola M.

Bioinformatics. 2010 Jul 15;26(14):1804-5. doi: 10.1093/bioinformatics/btq264. Epub 2010 May 25.

8.

Urine proteomics for profiling of human disease using high accuracy mass spectrometry.

Kentsis A, Monigatti F, Dorff K, Campagne F, Bachur R, Steen H.

Proteomics Clin Appl. 2009 Sep 1;3(9):1052-1061.

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