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Items: 7

1.

Structural and diffusion weighted MRI demonstrates responses to ibrutinib in a mouse model of follicular helper (Tfh) T-cell lymphoma.

Allchin RL, Kelly ME, Mamand S, Doran AG, Keane T, Ahearne MJ, Wagner SD.

PLoS One. 2019 Apr 23;14(4):e0215765. doi: 10.1371/journal.pone.0215765. eCollection 2019.

2.

Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.

Lilue J, Doran AG, Fiddes IT, Abrudan M, Armstrong J, Bennett R, Chow W, Collins J, Collins S, Czechanski A, Danecek P, Diekhans M, Dolle DD, Dunn M, Durbin R, Earl D, Ferguson-Smith A, Flicek P, Flint J, Frankish A, Fu B, Gerstein M, Gilbert J, Goodstadt L, Harrow J, Howe K, Ibarra-Soria X, Kolmogorov M, Lelliott CJ, Logan DW, Loveland J, Mathews CE, Mott R, Muir P, Nachtweide S, Navarro FCP, Odom DT, Park N, Pelan S, Pham SK, Quail M, Reinholdt L, Romoth L, Shirley L, Sisu C, Sjoberg-Herrera M, Stanke M, Steward C, Thomas M, Threadgold G, Thybert D, Torrance J, Wong K, Wood J, Yalcin B, Yang F, Adams DJ, Paten B, Keane TM.

Nat Genet. 2018 Nov;50(11):1574-1583. doi: 10.1038/s41588-018-0223-8. Epub 2018 Oct 1.

3.

Whole Genome Sequence of Two Wild-Derived Mus musculus domesticus Inbred Strains, LEWES/EiJ and ZALENDE/EiJ, with Different Diploid Numbers.

Morgan AP, Didion JP, Doran AG, Holt JM, McMillan L, Keane TM, de Villena FP.

G3 (Bethesda). 2016 Dec 7;6(12):4211-4216. doi: 10.1534/g3.116.034751.

4.

Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations.

Doran AG, Wong K, Flint J, Adams DJ, Hunter KW, Keane TM.

Genome Biol. 2016 Aug 1;17(1):167. doi: 10.1186/s13059-016-1024-y.

5.

The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes.

Adams DJ, Doran AG, Lilue J, Keane TM.

Mamm Genome. 2015 Oct;26(9-10):403-12. doi: 10.1007/s00335-015-9579-6. Epub 2015 Jun 30.

PMID:
26123534
6.
7.

Snpdat: easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms.

Doran AG, Creevey CJ.

BMC Bioinformatics. 2013 Feb 8;14:45. doi: 10.1186/1471-2105-14-45.

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