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Statistical Analysis of Community RNA Transcripts between Organic Carbon and Geogas-Fed Continental Deep Biosphere Groundwaters.

Lopez-Fernandez M, Broman E, Simone D, Bertilsson S, Dopson M.

MBio. 2019 Aug 13;10(4). pii: e01470-19. doi: 10.1128/mBio.01470-19.


Identification and Unusual Properties of the Master Regulator FNR in the Extreme Acidophile Acidithiobacillus ferrooxidans.

Osorio H, Mettert E, Kiley P, Dopson M, Jedlicki E, Holmes DS.

Front Microbiol. 2019 Jul 19;10:1642. doi: 10.3389/fmicb.2019.01642. eCollection 2019.


Comparison of boreal acid sulfate soil microbial communities in oxidative and reductive environments.

Christel S, Yu C, Wu X, Josefsson S, Lillhonga T, Högfors-Rönnholm E, Sohlenius G, Åström ME, Dopson M.

Res Microbiol. 2019 Jul 3. pii: S0923-2508(19)30059-2. doi: 10.1016/j.resmic.2019.06.002. [Epub ahead of print]


Effect of CO2 Concentration on Uptake and Assimilation of Inorganic Carbon in the Extreme Acidophile Acidithiobacillus ferrooxidans.

Esparza M, Jedlicki E, González C, Dopson M, Holmes DS.

Front Microbiol. 2019 Apr 4;10:603. doi: 10.3389/fmicb.2019.00603. eCollection 2019.


Deep neural networks outperform human expert's capacity in characterizing bioleaching bacterial biofilm composition.

Buetti-Dinh A, Galli V, Bellenberg S, Ilie O, Herold M, Christel S, Boretska M, Pivkin IV, Wilmes P, Sand W, Vera M, Dopson M.

Biotechnol Rep (Amst). 2019 Mar 7;22:e00321. doi: 10.1016/j.btre.2019.e00321. eCollection 2019 Jun.


Weak Iron Oxidation by Sulfobacillus thermosulfidooxidans Maintains a Favorable Redox Potential for Chalcopyrite Bioleaching.

Christel S, Herold M, Bellenberg S, Buetti-Dinh A, El Hajjami M, Pivkin IV, Sand W, Wilmes P, Poetsch A, Vera M, Dopson M.

Front Microbiol. 2018 Dec 12;9:3059. doi: 10.3389/fmicb.2018.03059. eCollection 2018.


Indirect DNA extraction method suitable for acidic soil with high clay content.

Högfors-Rönnholm E, Christel S, Engblom S, Dopson M.

MethodsX. 2018 Feb 22;5:136-140. doi: 10.1016/j.mex.2018.02.005. eCollection 2018.


A Novel Inorganic Sulfur Compound Metabolizing Ferroplasma-Like Population Is Suggested to Mediate Extracellular Electron Transfer.

Ni G, Simone D, Palma D, Broman E, Wu X, Turner S, Dopson M.

Front Microbiol. 2018 Dec 5;9:2945. doi: 10.3389/fmicb.2018.02945. eCollection 2018.


Depth and Dissolved Organic Carbon Shape Microbial Communities in Surface Influenced but Not Ancient Saline Terrestrial Aquifers.

Lopez-Fernandez M, Åström M, Bertilsson S, Dopson M.

Front Microbiol. 2018 Nov 27;9:2880. doi: 10.3389/fmicb.2018.02880. eCollection 2018.


Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere.

Lopez-Fernandez M, Simone D, Wu X, Soler L, Nilsson E, Holmfeldt K, Lantz H, Bertilsson S, Dopson M.

MBio. 2018 Nov 20;9(6). pii: e01792-18. doi: 10.1128/mBio.01792-18.


Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells.

Ni G, Canizales S, Broman E, Simone D, Palwai VR, Lundin D, Lopez-Fernandez M, Sleutels T, Dopson M.

Front Microbiol. 2018 Sep 28;9:2308. doi: 10.3389/fmicb.2018.02308. eCollection 2018.


Haloalkaliphilic microorganisms assist sulfide removal in a microbial electrolysis cell.

Ni G, Harnawan P, Seidel L, Ter Heijne A, Sleutels T, Buisman CJN, Dopson M.

J Hazard Mater. 2019 Feb 5;363:197-204. doi: 10.1016/j.jhazmat.2018.09.049. Epub 2018 Sep 20.


Automated Microscopic Analysis of Metal Sulfide Colonization by Acidophilic Microorganisms.

Bellenberg S, Buetti-Dinh A, Galli V, Ilie O, Herold M, Christel S, Boretska M, Pivkin IV, Wilmes P, Sand W, Vera M, Dopson M.

Appl Environ Microbiol. 2018 Oct 1;84(20). pii: e01835-18. doi: 10.1128/AEM.01835-18. Print 2018 Oct 15.


Spring and Late Summer Phytoplankton Biomass Impact on the Coastal Sediment Microbial Community Structure.

Broman E, Li L, Fridlund J, Svensson F, Legrand C, Dopson M.

Microb Ecol. 2019 Feb;77(2):288-303. doi: 10.1007/s00248-018-1229-6. Epub 2018 Jul 17.


Unprecedented 34 S-enrichment of pyrite formed following microbial sulfate reduction in fractured crystalline rocks.

Drake H, Whitehouse MJ, Heim C, Reiners PW, Tillberg M, Hogmalm KJ, Dopson M, Broman C, Åström ME.

Geobiology. 2018 Sep;16(5):556-574. doi: 10.1111/gbi.12297. Epub 2018 Jun 27.


Investigation of viable taxa in the deep terrestrial biosphere suggests high rates of nutrient recycling.

Lopez-Fernandez M, Broman E, Turner S, Wu X, Bertilsson S, Dopson M.

FEMS Microbiol Ecol. 2018 Aug 1;94(8). doi: 10.1093/femsec/fiy121.


Oxygenation of Hypoxic Coastal Baltic Sea Sediments Impacts on Chemistry, Microbial Community Composition, and Metabolism.

Broman E, Sachpazidou V, Pinhassi J, Dopson M.

Front Microbiol. 2017 Dec 12;8:2453. doi: 10.3389/fmicb.2017.02453. eCollection 2017.


Chemical and microbiological evaluation of novel chemical treatment methods for acid sulfate soils.

Högfors-Rönnholm E, Christel S, Dalhem K, Lillhonga T, Engblom S, Österholm P, Dopson M.

Sci Total Environ. 2018 Jun 1;625:39-49. doi: 10.1016/j.scitotenv.2017.12.287. Epub 2017 Dec 27.


Multi-omics Reveals the Lifestyle of the Acidophilic, Mineral-Oxidizing Model Species Leptospirillum ferriphilumT.

Christel S, Herold M, Bellenberg S, El Hajjami M, Buetti-Dinh A, Pivkin IV, Sand W, Wilmes P, Poetsch A, Dopson M.

Appl Environ Microbiol. 2018 Jan 17;84(3). pii: e02091-17. doi: 10.1128/AEM.02091-17. Print 2018 Feb 1.


Diatoms dominate the eukaryotic metatranscriptome during spring in coastal 'dead zone' sediments.

Broman E, Sachpazidou V, Dopson M, Hylander S.

Proc Biol Sci. 2017 Oct 11;284(1864). pii: 20171617. doi: 10.1098/rspb.2017.1617.


Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism.

Broman E, Sjöstedt J, Pinhassi J, Dopson M.

Microbiome. 2017 Aug 9;5(1):96. doi: 10.1186/s40168-017-0311-5.


Low temperature, autotrophic microbial denitrification using thiosulfate or thiocyanate as electron donor.

Broman E, Jawad A, Wu X, Christel S, Ni G, Lopez-Fernandez M, Sundkvist JE, Dopson M.

Biodegradation. 2017 Aug;28(4):287-301. doi: 10.1007/s10532-017-9796-7. Epub 2017 Jun 2.


Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters.

Wu X, Pedersen K, Edlund J, Eriksson L, Åström M, Andersson AF, Bertilsson S, Dopson M.

Microbiome. 2017 Mar 23;5(1):37. doi: 10.1186/s40168-017-0253-y.


Multiple Osmotic Stress Responses in Acidihalobacter prosperus Result in Tolerance to Chloride Ions.

Dopson M, Holmes DS, Lazcano M, McCredden TJ, Bryan CG, Mulroney KT, Steuart R, Jackaman C, Watkin EL.

Front Microbiol. 2017 Jan 5;7:2132. doi: 10.3389/fmicb.2016.02132. eCollection 2016.


Selection and Application of Sulfide Oxidizing Microorganisms Able to Withstand Thiols in Gas Biodesulfurization Systems.

Roman P, Klok JB, Sousa JA, Broman E, Dopson M, Van Zessen E, Bijmans MF, Sorokin DY, Janssen AJ.

Environ Sci Technol. 2016 Dec 6;50(23):12808-12815. Epub 2016 Nov 9.


Biological Membranes in Extreme Conditions: Anionic Tetraether Lipid Membranes and Their Interactions with Sodium and Potassium.

Pineda De Castro LF, Dopson M, Friedman R.

J Phys Chem B. 2016 Oct 20;120(41):10628-10634. doi: 10.1021/acs.jpcb.6b06206. Epub 2016 Oct 7.


Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield.

Hubalek V, Wu X, Eiler A, Buck M, Heim C, Dopson M, Bertilsson S, Ionescu D.

ISME J. 2016 Oct;10(10):2556. doi: 10.1038/ismej.2016.94. No abstract available.


Transcriptomic analysis reveals how a lack of potassium ions increases Sulfolobus acidocaldarius sensitivity to pH changes.

Buetti-Dinh A, Dethlefsen O, Friedman R, Dopson M.

Microbiology. 2016 Aug;162(8):1422-34. doi: 10.1099/mic.0.000314. Epub 2016 May 26.


Biological Membranes in Extreme Conditions: Simulations of Anionic Archaeal Tetraether Lipid Membranes.

Pineda De Castro LF, Dopson M, Friedman R.

PLoS One. 2016 May 11;11(5):e0155287. doi: 10.1371/journal.pone.0155287. eCollection 2016.


Electricity generation from an inorganic sulfur compound containing mining wastewater by acidophilic microorganisms.

Ni G, Christel S, Roman P, Wong ZL, Bijmans MF, Dopson M.

Res Microbiol. 2016 Sep;167(7):568-75. doi: 10.1016/j.resmic.2016.04.010. Epub 2016 May 4.


Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield.

Hubalek V, Wu X, Eiler A, Buck M, Heim C, Dopson M, Bertilsson S, Ionescu D.

ISME J. 2016 Oct;10(10):2447-58. doi: 10.1038/ismej.2016.36. Epub 2016 Mar 29. Erratum in: ISME J. 2016 Oct;10(10):2556.


RNA transcript sequencing reveals inorganic sulfur compound oxidation pathways in the acidophile Acidithiobacillus ferrivorans.

Christel S, Fridlund J, Buetti-Dinh A, Buck M, Watkin EL, Dopson M.

FEMS Microbiol Lett. 2016 Apr;363(7). pii: fnw057. doi: 10.1093/femsle/fnw057. Epub 2016 Mar 7.


Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations.

Wu X, Holmfeldt K, Hubalek V, Lundin D, Åström M, Bertilsson S, Dopson M.

ISME J. 2016 May;10(5):1192-203. doi: 10.1038/ismej.2015.185. Epub 2015 Oct 20.


Possibilities for extremophilic microorganisms in microbial electrochemical systems.

Dopson M, Ni G, Sleutels TH.

FEMS Microbiol Rev. 2016 Mar;40(2):164-81. doi: 10.1093/femsre/fuv044. Epub 2015 Oct 15. Review.


Oxygenation of anoxic sediments triggers hatching of zooplankton eggs.

Broman E, Brüsin M, Dopson M, Hylander S.

Proc Biol Sci. 2015 Oct 22;282(1817):20152025. doi: 10.1098/rspb.2015.2025.


Expression and activity of the Calvin-Benson-Bassham cycle transcriptional regulator CbbR from Acidithiobacillus ferrooxidans in Ralstonia eutropha.

Esparza M, Jedlicki E, Dopson M, Holmes DS.

FEMS Microbiol Lett. 2015 Aug;362(15):fnv108. doi: 10.1093/femsle/fnv108. Epub 2015 Jul 6.


Impact of mitigation strategies on acid sulfate soil chemistry and microbial community.

Wu X, Sten P, Engblom S, Nowak P, Österholm P, Dopson M.

Sci Total Environ. 2015 Sep 1;526:215-21. doi: 10.1016/j.scitotenv.2015.04.049. Epub 2015 Apr 28.


Metagenomic analysis reveals adaptations to a cold-adapted lifestyle in a low-temperature acid mine drainage stream.

Liljeqvist M, Ossandon FJ, González C, Rajan S, Stell A, Valdes J, Holmes DS, Dopson M.

FEMS Microbiol Ecol. 2015 Apr;91(4). pii: fiv011. doi: 10.1093/femsec/fiv011. Epub 2015 Jan 27.


Genetic variability of psychrotolerant Acidithiobacillus ferrivorans revealed by (meta)genomic analysis.

González C, Yanquepe M, Cardenas JP, Valdes J, Quatrini R, Holmes DS, Dopson M.

Res Microbiol. 2014 Nov;165(9):726-34. doi: 10.1016/j.resmic.2014.08.005. Epub 2014 Aug 27.


Metal resistance in acidophilic microorganisms and its significance for biotechnologies.

Dopson M, Holmes DS.

Appl Microbiol Biotechnol. 2014 Oct;98(19):8133-44. doi: 10.1007/s00253-014-5982-2. Epub 2014 Aug 8. Review.


Metal resistance or tolerance? Acidophiles confront high metal loads via both abiotic and biotic mechanisms.

Dopson M, Ossandon FJ, Lövgren L, Holmes DS.

Front Microbiol. 2014 Apr 9;5:157. doi: 10.3389/fmicb.2014.00157. eCollection 2014.


Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus.

Acuña LG, Cárdenas JP, Covarrubias PC, Haristoy JJ, Flores R, Nuñez H, Riadi G, Shmaryahu A, Valdés J, Dopson M, Rawlings DE, Banfield JF, Holmes DS, Quatrini R.

PLoS One. 2013 Nov 8;8(11):e78237. doi: 10.1371/journal.pone.0078237. eCollection 2013. Erratum in: PLoS One. 2015;10(3):e0122682.


Response of Acidithiobacillus caldus toward suboptimal pH conditions.

Mangold S, Rao Jonna V, Dopson M.

Extremophiles. 2013 Jul;17(4):689-96. doi: 10.1007/s00792-013-0553-5. Epub 2013 May 28.


Microbial community potentially responsible for acid and metal release from an Ostrobothnian acid sulfate soil.

Wu X, Wong ZL, Sten P, Engblom S, Osterholm P, Dopson M.

FEMS Microbiol Ecol. 2013 Jun;84(3):555-63. doi: 10.1111/1574-6941.12084. Epub 2013 Feb 26.


Anaerobic sulfur metabolism coupled to dissimilatory iron reduction in the extremophile Acidithiobacillus ferrooxidans.

Osorio H, Mangold S, Denis Y, Ñancucheo I, Esparza M, Johnson DB, Bonnefoy V, Dopson M, Holmes DS.

Appl Environ Microbiol. 2013 Apr;79(7):2172-81. doi: 10.1128/AEM.03057-12. Epub 2013 Jan 25.


Gene identification and substrate regulation provide insights into sulfur accumulation during bioleaching with the psychrotolerant acidophile Acidithiobacillus ferrivorans.

Liljeqvist M, Rzhepishevska OI, Dopson M.

Appl Environ Microbiol. 2013 Feb;79(3):951-7. doi: 10.1128/AEM.02989-12. Epub 2012 Nov 26.


Extreme zinc tolerance in acidophilic microorganisms from the bacterial and archaeal domains.

Mangold S, Potrykus J, Björn E, Lövgren L, Dopson M.

Extremophiles. 2013 Jan;17(1):75-85. doi: 10.1007/s00792-012-0495-3. Epub 2012 Nov 10.


Biodiversity, metabolism and applications of acidophilic sulfur-metabolizing microorganisms.

Dopson M, Johnson DB.

Environ Microbiol. 2012 Oct;14(10):2620-31. doi: 10.1111/j.1462-2920.2012.02749.x. Epub 2012 Apr 18. Review.


Bioleaching in brackish waters--effect of chloride ions on the acidophile population and proteomes of model species.

Zammit CM, Mangold S, Jonna Vr, Mutch LA, Watling HR, Dopson M, Watkin EL.

Appl Microbiol Biotechnol. 2012 Jan;93(1):319-29. doi: 10.1007/s00253-011-3731-3. Epub 2011 Nov 30.


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