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Spontaneous mutations in maize pollen are frequent in some lines and arise mainly from retrotranspositions and deletions.

Dooner HK, Wang Q, Huang JT, Li Y, He L, Xiong W, Du C.

Proc Natl Acad Sci U S A. 2019 May 28;116(22):10734-10743. doi: 10.1073/pnas.1903809116. Epub 2019 Apr 16.


The maize W22 genome provides a foundation for functional genomics and transposon biology.

Springer NM, Anderson SN, Andorf CM, Ahern KR, Bai F, Barad O, Barbazuk WB, Bass HW, Baruch K, Ben-Zvi G, Buckler ES, Bukowski R, Campbell MS, Cannon EKS, Chomet P, Dawe RK, Davenport R, Dooner HK, Du LH, Du C, Easterling KA, Gault C, Guan JC, Hunter CT, Jander G, Jiao Y, Koch KE, Kol G, Köllner TG, Kudo T, Li Q, Lu F, Mayfield-Jones D, Mei W, McCarty DR, Noshay JM, Portwood JL 2nd, Ronen G, Settles AM, Shem-Tov D, Shi J, Soifer I, Stein JC, Stitzer MC, Suzuki M, Vera DL, Vollbrecht E, Vrebalov JT, Ware D, Wei S, Wimalanathan K, Woodhouse MR, Xiong W, Brutnell TP.

Nat Genet. 2018 Sep;50(9):1282-1288. doi: 10.1038/s41588-018-0158-0. Epub 2018 Jul 30.


Competitive Ability of Maize Pollen Grains Requires Paralogous Serine Threonine Protein Kinases STK1 and STK2.

Huang JT, Wang Q, Park W, Feng Y, Kumar D, Meeley R, Dooner HK.

Genetics. 2017 Dec;207(4):1361-1370. doi: 10.1534/genetics.117.300358. Epub 2017 Oct 6.


Maize defective kernel mutant generated by insertion of a Ds element in a gene encoding a highly conserved TTI2 cochaperone.

Garcia N, Li Y, Dooner HK, Messing J.

Proc Natl Acad Sci U S A. 2017 May 16;114(20):5165-5170. doi: 10.1073/pnas.1703498114. Epub 2017 May 1.


Rolling-circle amplification of centromeric Helitrons in plant genomes.

Xiong W, Dooner HK, Du C.

Plant J. 2016 Dec;88(6):1038-1045. doi: 10.1111/tpj.13314. Epub 2016 Oct 25.


Polarized gene conversion at the bz locus of maize.

Dooner HK, He L.

Proc Natl Acad Sci U S A. 2014 Sep 23;111(38):13918-23. doi: 10.1073/pnas.1415482111. Epub 2014 Sep 8.


HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes.

Xiong W, He L, Lai J, Dooner HK, Du C.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10263-8. doi: 10.1073/pnas.1410068111. Epub 2014 Jun 30.


Variation in allelic expression associated with a recombination hotspot in Zea mays.

Hawkins JS, Delgado V, Feng L, Carlise M, Dooner HK, Bennetzen JL.

Plant J. 2014 Aug;79(3):375-84. doi: 10.1111/tpj.12537. Epub 2014 Jul 9. Erratum in: Plant J. 2015 Feb;81(4):649.


InsertionMapper: a pipeline tool for the identification of targeted sequences from multidimensional high throughput sequencing data.

Xiong W, He L, Li Y, Dooner HK, Du C.

BMC Genomics. 2013 Oct 4;14:679. doi: 10.1186/1471-2164-14-679.


TED, an autonomous and rare maize transposon of the mutator superfamily with a high gametophytic excision frequency.

Li Y, Harris L, Dooner HK.

Plant Cell. 2013 Sep;25(9):3251-65. doi: 10.1105/tpc.113.116517. Epub 2013 Sep 13.


Gene tagging with engineered Ds elements in maize.

Li Y, Segal G, Wang Q, Dooner HK.

Methods Mol Biol. 2013;1057:83-99. doi: 10.1007/978-1-62703-568-2_6.


The spectrum and frequency of self-inflicted and host gene mutations produced by the transposon Ac in maize.

Huang JT, Dooner HK.

Plant Cell. 2012 Oct;24(10):4149-62. doi: 10.1105/tpc.112.104265. Epub 2012 Oct 30.


Dynamic evolution of bz orthologous regions in the Andropogoneae and other grasses.

Wang Q, Dooner HK.

Plant J. 2012 Oct;72(2):212-21. doi: 10.1111/j.1365-313X.2012.05059.x. Epub 2012 Aug 1.


The complete Ac/Ds transposon family of maize.

Du C, Hoffman A, He L, Caronna J, Dooner HK.

BMC Genomics. 2011 Dec 1;12:588. doi: 10.1186/1471-2164-12-588.


The maize high-lysine mutant opaque7 is defective in an acyl-CoA synthetase-like protein.

Miclaus M, Wu Y, Xu JH, Dooner HK, Messing J.

Genetics. 2011 Dec;189(4):1271-80. doi: 10.1534/genetics.111.133918. Epub 2011 Sep 16.


The polychromatic Helitron landscape of the maize genome.

Du C, Fefelova N, Caronna J, He L, Dooner HK.

Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19916-21. doi: 10.1073/pnas.0904742106. Epub 2009 Nov 19.


Haplotype structure strongly affects recombination in a maize genetic interval polymorphic for Helitron and retrotransposon insertions.

He L, Dooner HK.

Proc Natl Acad Sci U S A. 2009 May 26;106(21):8410-6. doi: 10.1073/pnas.0902972106. Epub 2009 Apr 24.


Excision of Helitron transposons in maize.

Li Y, Dooner HK.

Genetics. 2009 May;182(1):399-402. doi: 10.1534/genetics.109.101527. Epub 2009 Mar 2.


Macrotransposition and other complex chromosomal restructuring in maize by closely linked transposons in direct orientation.

Huang JT, Dooner HK.

Plant Cell. 2008 Aug;20(8):2019-32. doi: 10.1105/tpc.108.060582. Epub 2008 Aug 15.


Maize genome structure variation: interplay between retrotransposon polymorphisms and genic recombination.

Dooner HK, He L.

Plant Cell. 2008 Feb;20(2):249-58. doi: 10.1105/tpc.107.057596. Epub 2008 Feb 22.


Computational prediction and molecular confirmation of Helitron transposons in the maize genome.

Du C, Caronna J, He L, Dooner HK.

BMC Genomics. 2008 Jan 28;9:51. doi: 10.1186/1471-2164-9-51.


Characterization of the monoterpene synthase gene tps26, the ortholog of a gene induced by insect herbivory in maize.

Lin C, Shen B, Xu Z, Köllner TG, Degenhardt J, Dooner HK.

Plant Physiol. 2008 Mar;146(3):940-51. doi: 10.1104/pp.107.109553. Epub 2008 Jan 24.


Give-and-take: interactions between DNA transposons and their host plant genomes.

Dooner HK, Weil CF.

Curr Opin Genet Dev. 2007 Dec;17(6):486-92. Epub 2007 Oct 4. Review.


Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus.

Wang Q, Dooner HK.

Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17644-9. Epub 2006 Nov 13.


Visualizing bz1 missense suppression in Zea mays: an assay for monocot tRNA expression and utilization.

Wu XR, Chen Z, Shende A, Dooner HK, Folk WR.

Plant Mol Biol. 2006 Jul;61(4-5):795-8.


Organization and variability of the maize genome.

Messing J, Dooner HK.

Curr Opin Plant Biol. 2006 Apr;9(2):157-63. Epub 2006 Feb 3. Review.


Gene movement by Helitron transposons contributes to the haplotype variability of maize.

Lai J, Li Y, Messing J, Dooner HK.

Proc Natl Acad Sci U S A. 2005 Jun 21;102(25):9068-73. Epub 2005 Jun 10.


Mx-rMx, a family of interacting transposons in the growing hAT superfamily of maize.

Xu Z, Dooner HK.

Plant Cell. 2005 Feb;17(2):375-88. Epub 2005 Jan 19.


Jittery, a Mutator distant relative with a paradoxical mobile behavior: excision without reinsertion.

Xu Z, Yan X, Maurais S, Fu H, O'Brien DG, Mottinger J, Dooner HK.

Plant Cell. 2004 May;16(5):1105-14. Epub 2004 Apr 9.


Intraspecific violation of genetic colinearity and its implications in maize.

Fu H, Dooner HK.

Proc Natl Acad Sci U S A. 2002 Jul 9;99(14):9573-8. Epub 2002 Jun 11.


Use of the transposon Ac as a gene-searching engine in the maize genome.

Cowperthwaite M, Park W, Xu Z, Yan X, Maurais SC, Dooner HK.

Plant Cell. 2002 Mar;14(3):713-26.


Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude.

Fu H, Zheng Z, Dooner HK.

Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):1082-7. Epub 2002 Jan 15.


The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genome.

Fu H, Park W, Yan X, Zheng Z, Shen B, Dooner HK.

Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8903-8. Epub 2001 Jul 3.


Characterization of a new Arabidopsis mutant exhibiting enhanced disease resistance.

Silva H, Yoshioka K, Dooner HK, Klessig DF.

Mol Plant Microbe Interact. 1999 Dec;12(12):1053-63.


Origination of Ds elements from Ac elements in maize: evidence for rare repair synthesis at the site of Ac excision.

Yan X, Martínez-Férez IM, Kavchok S, Dooner HK.

Genetics. 1999 Aug;152(4):1733-40.


Sesqui-Ds, the chromosome-breaking insertion at bz-m1, links double Ds to the original Ds element.

Martínez-Férez IM, Dooner HK.

Mol Gen Genet. 1997 Aug;255(6):580-6.


Directed tagging of the Arabidopsis FATTY ACID ELONGATION1 (FAE1) gene with the maize transposon activator.

James DW Jr, Lim E, Keller J, Plooy I, Ralston E, Dooner HK.

Plant Cell. 1995 Mar;7(3):309-19.


A Mutant of Arabidopsis Deficient in the Elongation of Palmitic Acid.

Wu J, James DW Jr, Dooner HK, Browse J.

Plant Physiol. 1994 Sep;106(1):143-150.


Distribution of unlinked receptor sites for transposed Ac elements from the bz-m2(Ac) allele in maize.

Dooner HK, Belachew A, Burgess D, Harding S, Ralston M, Ralston E.

Genetics. 1994 Jan;136(1):261-79.


Preferential transposition ofAc to linked sites in Arabidopsis.

Keller J, Lim E, Dooner HK.

Theor Appl Genet. 1993 Jun;86(5):585-8. doi: 10.1007/BF00838713.


Tagging and Cloning of a Petunia Flower Color Gene with the Maize Transposable Element Activator.

Chuck G, Robbins T, Nijjar C, Ralston E, Courtney-Gutterson N, Dooner HK.

Plant Cell. 1993 Apr;5(4):371-378.


Effects of gene dosage and sequence modification on the frequency and timing of transposition of the maize element Activator (Ac) in tobacco.

Keller J, Jones JD, Harper E, Lim E, Carland F, Ralston EJ, Dooner HK.

Plant Mol Biol. 1993 Jan;21(1):157-70.


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