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Items: 47

1.

Overcoming cellulose recalcitrance in woody biomass for the lignin-first biorefinery.

Yang H, Zhang X, Luo H, Liu B, Shiga TM, Li X, Kim JI, Rubinelli P, Overton JC, Subramanyam V, Cooper BR, Mo H, Abu-Omar MM, Chapple C, Donohoe BS, Makowski L, Mosier NS, McCann MC, Carpita NC, Meilan R.

Biotechnol Biofuels. 2019 Jun 29;12:171. doi: 10.1186/s13068-019-1503-y. eCollection 2019.

2.

Toward an understanding of the increase in enzymatic hydrolysis by mechanical refining.

de Assis T, Huang S, Driemeier CE, Donohoe BS, Kim C, Kim SH, Gonzalez R, Jameel H, Park S.

Biotechnol Biofuels. 2018 Oct 25;11:289. doi: 10.1186/s13068-018-1289-3. eCollection 2018.

3.

Oleaginicity of the yeast strain Saccharomyces cerevisiae D5A.

He Q, Yang Y, Yang S, Donohoe BS, Van Wychen S, Zhang M, Himmel ME, Knoshaug EP.

Biotechnol Biofuels. 2018 Sep 24;11:258. doi: 10.1186/s13068-018-1256-z. eCollection 2018.

4.

3D electron tomographic and biochemical analysis of ER, Golgi and trans Golgi network membrane systems in stimulated Venus flytrap (Dionaea muscipula) glandular cells.

Gergely ZR, Martinez DE, Donohoe BS, Mogelsvang S, Herder R, Staehelin LA.

J Biol Res (Thessalon). 2018 Aug 8;25:15. doi: 10.1186/s40709-018-0086-2. eCollection 2018 Dec.

5.

An iterative computational design approach to increase the thermal endurance of a mesophilic enzyme.

Sammond DW, Kastelowitz N, Donohoe BS, Alahuhta M, Lunin VV, Chung D, Sarai NS, Yin H, Mittal A, Himmel ME, Guss AM, Bomble YJ.

Biotechnol Biofuels. 2018 Jul 9;11:189. doi: 10.1186/s13068-018-1178-9. eCollection 2018.

6.

Characterization and engineering of a plastic-degrading aromatic polyesterase.

Austin HP, Allen MD, Donohoe BS, Rorrer NA, Kearns FL, Silveira RL, Pollard BC, Dominick G, Duman R, El Omari K, Mykhaylyk V, Wagner A, Michener WE, Amore A, Skaf MS, Crowley MF, Thorne AW, Johnson CW, Woodcock HL, McGeehan JE, Beckham GT.

Proc Natl Acad Sci U S A. 2018 May 8;115(19):E4350-E4357. doi: 10.1073/pnas.1718804115. Epub 2018 Apr 17.

7.

Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis.

Biswal AK, Atmodjo MA, Li M, Baxter HL, Yoo CG, Pu Y, Lee YC, Mazarei M, Black IM, Zhang JY, Ramanna H, Bray AL, King ZR, LaFayette PR, Pattathil S, Donohoe BS, Mohanty SS, Ryno D, Yee K, Thompson OA, Rodriguez M Jr, Dumitrache A, Natzke J, Winkeler K, Collins C, Yang X, Tan L, Sykes RW, Gjersing EL, Ziebell A, Turner GB, Decker SR, Hahn MG, Davison BH, Udvardi MK, Mielenz JR, Davis MF, Nelson RS, Parrott WA, Ragauskas AJ, Neal Stewart C Jr, Mohnen D.

Nat Biotechnol. 2018 Mar;36(3):249-257. doi: 10.1038/nbt.4067. Epub 2018 Feb 12.

PMID:
29431741
8.

Enhanced rates of enzymatic saccharification and catalytic synthesis of biofuel substrates in gelatinized cellulose generated by trifluoroacetic acid.

Shiga TM, Xiao W, Yang H, Zhang X, Olek AT, Donohoe BS, Liu J, Makowski L, Hou T, McCann MC, Carpita NC, Mosier NS.

Biotechnol Biofuels. 2017 Dec 27;10:310. doi: 10.1186/s13068-017-0999-2. eCollection 2017.

9.

Evaluation of parameters affecting switchgrass tissue culture: toward a consolidated procedure for Agrobacterium-mediated transformation of switchgrass (Panicum virgatum).

Lin CY, Donohoe BS, Ahuja N, Garrity DM, Qu R, Tucker MP, Himmel ME, Wei H.

Plant Methods. 2017 Dec 19;13:113. doi: 10.1186/s13007-017-0263-6. eCollection 2017.

10.

Adding tetrahydrofuran to dilute acid pretreatment provides new insights into substrate changes that greatly enhance biomass deconstruction by Clostridium thermocellum and fungal enzymes.

Thomas VA, Donohoe BS, Li M, Pu Y, Ragauskas AJ, Kumar R, Nguyen TY, Cai CM, Wyman CE.

Biotechnol Biofuels. 2017 Nov 30;10:252. doi: 10.1186/s13068-017-0937-3. eCollection 2017.

11.

Reassessing the Roles of PIN Proteins and Anticlinal Microtubules during Pavement Cell Morphogenesis.

Belteton SA, Sawchuk MG, Donohoe BS, Scarpella E, Szymanski DB.

Plant Physiol. 2018 Jan;176(1):432-449. doi: 10.1104/pp.17.01554. Epub 2017 Nov 30.

12.

Lignocellulose deconstruction in the biosphere.

Bomble YJ, Lin CY, Amore A, Wei H, Holwerda EK, Ciesielski PN, Donohoe BS, Decker SR, Lynd LR, Himmel ME.

Curr Opin Chem Biol. 2017 Dec;41:61-70. doi: 10.1016/j.cbpa.2017.10.013. Epub 2017 Nov 2. Review.

PMID:
29100023
13.

The Multi Domain Caldicellulosiruptor bescii CelA Cellulase Excels at the Hydrolysis of Crystalline Cellulose.

Brunecky R, Donohoe BS, Yarbrough JM, Mittal A, Scott BR, Ding H, Taylor Ii LE, Russell JF, Chung D, Westpheling J, Teter SA, Himmel ME, Bomble YJ.

Sci Rep. 2017 Aug 29;7(1):9622. doi: 10.1038/s41598-017-08985-w.

14.

Towards an Understanding of Enhanced Biomass Digestibility by In Planta Expression of a Family 5 Glycoside Hydrolase.

Donohoe BS, Wei H, Mittal A, Shollenberger T, Lunin VV, Himmel ME, Brunecky R.

Sci Rep. 2017 Jun 29;7(1):4389. doi: 10.1038/s41598-017-04502-1.

15.

Directed plant cell-wall accumulation of iron: embedding co-catalyst for efficient biomass conversion.

Lin CY, Jakes JE, Donohoe BS, Ciesielski PN, Yang H, Gleber SC, Vogt S, Ding SY, Peer WA, Murphy AS, McCann MC, Himmel ME, Tucker MP, Wei H.

Biotechnol Biofuels. 2016 Oct 21;9:225. eCollection 2016.

16.

Dramatic performance of Clostridium thermocellum explained by its wide range of cellulase modalities.

Xu Q, Resch MG, Podkaminer K, Yang S, Baker JO, Donohoe BS, Wilson C, Klingeman DM, Olson DG, Decker SR, Giannone RJ, Hettich RL, Brown SD, Lynd LR, Bayer EA, Himmel ME, Bomble YJ.

Sci Adv. 2016 Feb 5;2(2):e1501254. doi: 10.1126/sciadv.1501254. eCollection 2016 Feb.

17.

Biological lignocellulose solubilization: comparative evaluation of biocatalysts and enhancement via cotreatment.

Paye JM, Guseva A, Hammer SK, Gjersing E, Davis MF, Davison BH, Olstad J, Donohoe BS, Nguyen TY, Wyman CE, Pattathil S, Hahn MG, Lynd LR.

Biotechnol Biofuels. 2016 Jan 12;9:8. doi: 10.1186/s13068-015-0412-y. eCollection 2016.

18.

Biomass accessibility analysis using electron tomography.

Hinkle JD, Ciesielski PN, Gruchalla K, Munch KR, Donohoe BS.

Biotechnol Biofuels. 2015 Dec 25;8:212. doi: 10.1186/s13068-015-0395-8. eCollection 2015.

19.

Mechanisms employed by cellulase systems to gain access through the complex architecture of lignocellulosic substrates.

Donohoe BS, Resch MG.

Curr Opin Chem Biol. 2015 Dec;29:100-7. doi: 10.1016/j.cbpa.2015.08.014. Epub 2015 Oct 31. Review.

PMID:
26529490
20.

Manipulation of Guaiacyl and Syringyl Monomer Biosynthesis in an Arabidopsis Cinnamyl Alcohol Dehydrogenase Mutant Results in Atypical Lignin Biosynthesis and Modified Cell Wall Structure.

Anderson NA, Tobimatsu Y, Ciesielski PN, Ximenes E, Ralph J, Donohoe BS, Ladisch M, Chapple C.

Plant Cell. 2015 Aug;27(8):2195-209. doi: 10.1105/tpc.15.00373. Epub 2015 Aug 11.

21.

Identifying the ionically bound cell wall and intracellular glycoside hydrolases in late growth stage Arabidopsis stems: implications for the genetic engineering of bioenergy crops.

Wei H, Brunecky R, Donohoe BS, Ding SY, Ciesielski PN, Yang S, Tucker MP, Himmel ME.

Front Plant Sci. 2015 May 13;6:315. doi: 10.3389/fpls.2015.00315. eCollection 2015.

22.

Response to Comment on "Revealing nature's cellulase diversity: the digestion mechanism of Caldicellulosiruptor bescii CelA".

Brunecky R, Alahuhta M, Xu Q, Donohoe BS, Crowley MF, Kataeva IA, Yang SJ, Resch MG, Adams MW, Lunin VV, Himmel ME, Bomble YJ.

Science. 2014 May 9;344(6184):578. doi: 10.1126/science.1251701.

23.

Effect of mechanical disruption on the effectiveness of three reactors used for dilute acid pretreatment of corn stover Part 1: chemical and physical substrate analysis.

Wang W, Chen X, Donohoe BS, Ciesielski PN, Katahira R, Kuhn EM, Kafle K, Lee CM, Park S, Kim SH, Tucker MP, Himmel ME, Johnson DK.

Biotechnol Biofuels. 2014 Apr 9;7:57. doi: 10.1186/1754-6834-7-57. eCollection 2014.

24.

Effect of mechanical disruption on the effectiveness of three reactors used for dilute acid pretreatment of corn stover Part 2: morphological and structural substrate analysis.

Ciesielski PN, Wang W, Chen X, Vinzant TB, Tucker MP, Decker SR, Himmel ME, Johnson DK, Donohoe BS.

Biotechnol Biofuels. 2014 Apr 1;7:47. doi: 10.1186/1754-6834-7-47. eCollection 2014.

25.

Disruption of Mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant.

Bonawitz ND, Kim JI, Tobimatsu Y, Ciesielski PN, Anderson NA, Ximenes E, Maeda J, Ralph J, Donohoe BS, Ladisch M, Chapple C.

Nature. 2014 May 15;509(7500):376-80. doi: 10.1038/nature13084. Epub 2014 Mar 16.

PMID:
24670657
26.

Chemically induced conditional rescue of the reduced epidermal fluorescence8 mutant of Arabidopsis reveals rapid restoration of growth and selective turnover of secondary metabolite pools.

Kim JI, Ciesielski PN, Donohoe BS, Chapple C, Li X.

Plant Physiol. 2014 Feb;164(2):584-95. doi: 10.1104/pp.113.229393. Epub 2013 Dec 31.

27.

Revealing nature's cellulase diversity: the digestion mechanism of Caldicellulosiruptor bescii CelA.

Brunecky R, Alahuhta M, Xu Q, Donohoe BS, Crowley MF, Kataeva IA, Yang SJ, Resch MG, Adams MW, Lunin VV, Himmel ME, Bomble YJ.

Science. 2013 Dec 20;342(6165):1513-6. doi: 10.1126/science.1244273.

PMID:
24357319
28.

3D electron tomography of pretreated biomass informs atomic modeling of cellulose microfibrils.

Ciesielski PN, Matthews JF, Tucker MP, Beckham GT, Crowley MF, Himmel ME, Donohoe BS.

ACS Nano. 2013 Sep 24;7(9):8011-9. doi: 10.1021/nn4031542. Epub 2013 Sep 4.

PMID:
23988022
29.

Cis-Golgi cisternal assembly and biosynthetic activation occur sequentially in plants and algae.

Donohoe BS, Kang BH, Gerl MJ, Gergely ZR, McMichael CM, Bednarek SY, Staehelin LA.

Traffic. 2013 May;14(5):551-67. doi: 10.1111/tra.12052. Epub 2013 Feb 25.

30.

Preservation and preparation of lignocellulosic biomass samples for multi-scale microscopy analysis.

Donohoe BS, Ciesielski PN, Vinzant TB.

Methods Mol Biol. 2012;908:31-47. doi: 10.1007/978-1-61779-956-3_4.

PMID:
22843387
31.

The metagenome of an anaerobic microbial community decomposing poplar wood chips.

van der Lelie D, Taghavi S, McCorkle SM, Li LL, Malfatti SA, Monteleone D, Donohoe BS, Ding SY, Adney WS, Himmel ME, Tringe SG.

PLoS One. 2012;7(5):e36740. doi: 10.1371/journal.pone.0036740. Epub 2012 May 21.

32.

Elucidating the role of ferrous ion cocatalyst in enhancing dilute acid pretreatment of lignocellulosic biomass.

Wei H, Donohoe BS, Vinzant TB, Ciesielski PN, Wang W, Gedvilas LM, Zeng Y, Johnson DK, Ding SY, Himmel ME, Tucker MP.

Biotechnol Biofuels. 2011 Nov 10;4:48. doi: 10.1186/1754-6834-4-48.

33.

Comparative study on enzymatic digestibility of switchgrass varieties and harvests processed by leading pretreatment technologies.

Kim Y, Mosier NS, Ladisch MR, Pallapolu VR, Lee YY, Garlock R, Balan V, Dale BE, Donohoe BS, Vinzant TB, Elander RT, Falls M, Sierra R, Holtzapple MT, Shi J, Ebrik MA, Redmond T, Yang B, Wyman CE, Warner RE.

Bioresour Technol. 2011 Dec;102(24):11089-96. doi: 10.1016/j.biortech.2011.06.054. Epub 2011 Jun 22.

PMID:
21741233
34.

Application of cellulase and hemicellulase to pure xylan, pure cellulose, and switchgrass solids from leading pretreatments.

Shi J, Ebrik MA, Yang B, Garlock RJ, Balan V, Dale BE, Pallapolu VR, Lee YY, Kim Y, Mosier NS, Ladisch MR, Holtzapple MT, Falls M, Sierra-Ramirez R, Donohoe BS, Vinzant TB, Elander RT, Hames B, Thomas S, Warner RE, Wyman CE.

Bioresour Technol. 2011 Dec;102(24):11080-8. doi: 10.1016/j.biortech.2011.04.003. Epub 2011 Apr 8.

PMID:
21596559
35.

Surface and ultrastructural characterization of raw and pretreated switchgrass.

Donohoe BS, Vinzant TB, Elander RT, Pallapolu VR, Lee YY, Garlock RJ, Balan V, Dale BE, Kim Y, Mosier NS, Ladisch MR, Falls M, Holtzapple MT, Sierra-Ramirez R, Shi J, Ebrik MA, Redmond T, Yang B, Wyman CE, Hames B, Thomas S, Warner RE.

Bioresour Technol. 2011 Dec;102(24):11097-104. doi: 10.1016/j.biortech.2011.03.092. Epub 2011 Apr 2.

PMID:
21571527
36.

Comparative material balances around pretreatment technologies for the conversion of switchgrass to soluble sugars.

Garlock RJ, Balan V, Dale BE, Pallapolu VR, Lee YY, Kim Y, Mosier NS, Ladisch MR, Holtzapple MT, Falls M, Sierra-Ramirez R, Shi J, Ebrik MA, Redmond T, Yang B, Wyman CE, Donohoe BS, Vinzant TB, Elander RT, Hames B, Thomas S, Warner RE.

Bioresour Technol. 2011 Dec;102(24):11063-71. doi: 10.1016/j.biortech.2011.04.002. Epub 2011 Apr 7.

PMID:
21524908
37.

Effects of enzyme loading and β-glucosidase supplementation on enzymatic hydrolysis of switchgrass processed by leading pretreatment technologies.

Pallapolu VR, Lee YY, Garlock RJ, Balan V, Dale BE, Kim Y, Mosier NS, Ladisch MR, Falls M, Holtzapple MT, Sierra-Ramirez R, Shi J, Ebrik MA, Redmond T, Yang B, Wyman CE, Donohoe BS, Vinzant TB, Elander RT, Hames B, Thomas S, Warner RE.

Bioresour Technol. 2011 Dec;102(24):11115-20. doi: 10.1016/j.biortech.2011.03.085. Epub 2011 Mar 31.

PMID:
21507624
38.

Investigation of enzyme formulation on pretreated switchgrass.

Falls M, Shi J, Ebrik MA, Redmond T, Yang B, Wyman CE, Garlock R, Balan V, Dale BE, Pallapolu VR, Lee YY, Kim Y, Mosier NS, Ladisch MR, Hames B, Thomas S, Donohoe BS, Vinzant TB, Elander RT, Warner RE, Sierra-Ramirez R, Holtzapple MT.

Bioresour Technol. 2011 Dec;102(24):11072-9. doi: 10.1016/j.biortech.2011.03.035. Epub 2011 Mar 21.

PMID:
21478012
39.

Detecting cellulase penetration into corn stover cell walls by immuno-electron microscopy.

Donohoe BS, Selig MJ, Viamajala S, Vinzant TB, Adney WS, Himmel ME.

Biotechnol Bioeng. 2009 Jun 15;103(3):480-9. doi: 10.1002/bit.22281.

PMID:
19266575
40.

Redistribution of xylan in maize cell walls during dilute acid pretreatment.

Brunecky R, Vinzant TB, Porter SE, Donohoe BS, Johnson DK, Himmel ME.

Biotechnol Bioeng. 2009 Apr 15;102(6):1537-43. doi: 10.1002/bit.22211.

PMID:
19161247
41.

Visualizing lignin coalescence and migration through maize cell walls following thermochemical pretreatment.

Donohoe BS, Decker SR, Tucker MP, Himmel ME, Vinzant TB.

Biotechnol Bioeng. 2008 Dec 1;101(5):913-25. doi: 10.1002/bit.21959.

PMID:
18781690
42.

Nanoparticle shape and configuration analysis by transmission electron tomography.

Ahrenkiel SP, Yu PR, Murphy JE, Nedeljković JM, Donohoe BS.

J Microsc. 2008 Jun;230(Pt 3):382-7. doi: 10.1111/j.1365-2818.2008.01996.x.

43.

Microscopic analysis of corn fiber using starch- and cellulose-specific molecular probes.

Porter SE, Donohoe BS, Beery KE, Xu Q, Ding SY, Vinzant TB, Abbas CA, Himmel ME.

Biotechnol Bioeng. 2007 Sep 1;98(1):123-31.

PMID:
17335065
44.

Identification and characterization of COPIa- and COPIb-type vesicle classes associated with plant and algal Golgi.

Donohoe BS, Kang BH, Staehelin LA.

Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):163-8. Epub 2006 Dec 21.

45.

Electron tomography of ER, Golgi and related membrane systems.

Donohoe BS, Mogelsvang S, Staehelin LA.

Methods. 2006 Jun;39(2):154-62. Review.

PMID:
16854591
46.

Recruitment of a double bond isomerase to serve as a reductive dehalogenase during biodegradation of pentachlorophenol.

Anandarajah K, Kiefer PM Jr, Donohoe BS, Copley SD.

Biochemistry. 2000 May 9;39(18):5303-11.

PMID:
10820000
47.

The relationship between synaptonemal complex length and genome size in four vertebrate classes (Osteicthyes, Reptilia, Aves, Mammalia).

Peterson DG, Stack SM, Healy JL, Donohoe BS, Anderson LK.

Chromosome Res. 1994 Mar;2(2):153-62.

PMID:
8032674

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