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Items: 1 to 50 of 243

1.

Mucinous Tubular and Spindle-Cell Carcinoma of the Kidney: Clinical Features, Genomic Profiles, and Treatment Outcomes.

Ged Y, Chen YB, Knezevic A, Donoghue MTA, Carlo MI, Lee CH, Feldman DR, Patil S, Hakimi AA, Russo P, Voss MH, Motzer RJ.

Clin Genitourin Cancer. 2019 May 2. pii: S1558-7673(19)30132-6. doi: 10.1016/j.clgc.2019.04.006. [Epub ahead of print]

PMID:
31151928
2.

Differences in flowering time maintain species boundaries in a continental radiation of Viburnum.

Spriggs EL, Schlutius C, Eaton DA, Park B, Sweeney PW, Edwards EJ, Donoghue MJ.

Am J Bot. 2019 May 23. doi: 10.1002/ajb2.1292. [Epub ahead of print]

PMID:
31124135
3.

The Effect of Fluence on Macrophage Kinetics, Oxidative Stress, and Wound Closure Using Real-Time In Vivo Imaging.

Paredes AD, Benavidez D, Cheng J, Mangos S, Patil R, Donoghue M, Benedetti E, Bartholomew A.

Photobiomodul Photomed Laser Surg. 2019 Jan;37(1):45-52. doi: 10.1089/photob.2018.4494.

PMID:
31050943
4.

Germline-Focused Analysis of Tumour-Only Sequencing: Recommendations from the ESMO Precision Medicine Working Group.

Mandelker D, Donoghue MTA, Talukdar S, Bandlamudi C, Srinivasan P, Vivek M, Jezdic S, Hanson H, Snape K, Kulkarni A, Hawkes L, Douillard JY, Wallace SE, Rial-Sebbag E, Meric-Bersntam F, George A, Chubb D, Loveday C, Ladanyi M, Berger MF, Taylor BS, Turnbull C.

Ann Oncol. 2019 May 3. pii: mdz136. doi: 10.1093/annonc/mdz136. [Epub ahead of print]

PMID:
31050713
5.

Adaptation meets dispersal: legumes in the land of succulents.

Donoghue MJ.

New Phytol. 2019 Jun;222(4):1667-1669. doi: 10.1111/nph.15834. Epub 2019 Apr 20. No abstract available.

PMID:
31004562
6.

Paternally Expressed Imprinted Genes under Positive Darwinian Selection in Arabidopsis thaliana.

Tuteja R, McKeown PC, Ryan P, Morgan CC, Donoghue MTA, Downing T, O'Connell MJ, Spillane C.

Mol Biol Evol. 2019 Jun 1;36(6):1239-1253. doi: 10.1093/molbev/msz063.

7.

Transgenerational effects of inter-ploidy cross direction on reproduction and F2 seed development of Arabidopsis thaliana F1 hybrid triploids.

Duszynska D, Vilhjalmsson B, Castillo Bravo R, Swamidatta S, Juenger TE, Donoghue MTA, Comte A, Nordborg M, Sharbel TF, Brychkova G, McKeown PC, Spillane C.

Plant Reprod. 2019 Mar 21. doi: 10.1007/s00497-019-00369-6. [Epub ahead of print]

PMID:
30903284
8.

Model clades are vital for comparative biology, and ascertainment bias is not a problem in practice: a response to Beaulieu and O'Meara (2018).

Donoghue MJ, Edwards EJ.

Am J Bot. 2019 Mar;106(3):327-330. doi: 10.1002/ajb2.1255. Epub 2019 Mar 18. No abstract available.

PMID:
30882894
9.

Phylogeography of a widespread eastern North American shrub, Viburnum lantanoides.

Park B, Donoghue MJ.

Am J Bot. 2019 Mar;106(3):389-401. doi: 10.1002/ajb2.1248. Epub 2019 Mar 12.

PMID:
30860611
10.

Whales in warming water: Assessing breeding habitat diversity and adaptability in Oceania's changing climate.

Derville S, Torres LG, Albertson R, Andrews O, Baker CS, Carzon P, Constantine R, Donoghue M, Dutheil C, Gannier A, Oremus M, Poole MM, Robbins J, Garrigue C.

Glob Chang Biol. 2019 Jan 4. doi: 10.1111/gcb.14563. [Epub ahead of print]

PMID:
30609213
11.

Restriction-Site-Associated DNA Sequencing Reveals a Cryptic Viburnum Species on the North American Coastal Plain.

Spriggs EL, Eaton DAR, Sweeney PW, Schlutius C, Edwards EJ, Donoghue MJ.

Syst Biol. 2019 Mar 1;68(2):187-203. doi: 10.1093/sysbio/syy084.

PMID:
30521050
12.

Widespread Selection for Oncogenic Mutant Allele Imbalance in Cancer.

Bielski CM, Donoghue MTA, Gadiya M, Hanrahan AJ, Won HH, Chang MT, Jonsson P, Penson AV, Gorelick A, Harris C, Schram AM, Syed A, Zehir A, Chapman PB, Hyman DM, Solit DB, Shannon K, Chandarlapaty S, Berger MF, Taylor BS.

Cancer Cell. 2018 Nov 12;34(5):852-862.e4. doi: 10.1016/j.ccell.2018.10.003. Epub 2018 Nov 1.

PMID:
30393068
13.

Clonal Relatedness and Mutational Differences between Upper Tract and Bladder Urothelial Carcinoma.

Audenet F, Isharwal S, Cha EK, Donoghue MTA, Drill EN, Ostrovnaya I, Pietzak EJ, Sfakianos JP, Bagrodia A, Murugan P, Dalbagni G, Donahue TF, Rosenberg JE, Bajorin DF, Arcila ME, Hechtman JF, Berger MF, Taylor BS, Al-Ahmadie H, Iyer G, Bochner BH, Coleman JA, Solit DB.

Clin Cancer Res. 2019 Feb 1;25(3):967-976. doi: 10.1158/1078-0432.CCR-18-2039. Epub 2018 Oct 23.

PMID:
30352907
14.

The Genomic Landscape of Endocrine-Resistant Advanced Breast Cancers.

Razavi P, Chang MT, Xu G, Bandlamudi C, Ross DS, Vasan N, Cai Y, Bielski CM, Donoghue MTA, Jonsson P, Penson A, Shen R, Pareja F, Kundra R, Middha S, Cheng ML, Zehir A, Kandoth C, Patel R, Huberman K, Smyth LM, Jhaveri K, Modi S, Traina TA, Dang C, Zhang W, Weigelt B, Li BT, Ladanyi M, Hyman DM, Schultz N, Robson ME, Hudis C, Brogi E, Viale A, Norton L, Dickler MN, Berger MF, Iacobuzio-Donahue CA, Chandarlapaty S, Scaltriti M, Reis-Filho JS, Solit DB, Taylor BS, Baselga J.

Cancer Cell. 2018 Sep 10;34(3):427-438.e6. doi: 10.1016/j.ccell.2018.08.008.

PMID:
30205045
15.

Effects of salivary thiocyanate levels on oral mucosa in young adult smokers: A biochemical and cytological study.

Prakruthi BV, Nandini DB, Donoghue M, Praveen SB, Kumar KM, Ashwini R.

J Oral Maxillofac Pathol. 2018 May-Aug;22(2):204-209. doi: 10.4103/jomfp.JOMFP_49_17.

16.

FDA Approval Summary: Pembrolizumab for Recurrent Locally Advanced or Metastatic Gastric or Gastroesophageal Junction Adenocarcinoma Expressing PD-L1.

Fashoyin-Aje L, Donoghue M, Chen H, He K, Veeraraghavan J, Goldberg KB, Keegan P, McKee AE, Pazdur R.

Oncologist. 2019 Jan;24(1):103-109. doi: 10.1634/theoncologist.2018-0221. Epub 2018 Aug 17.

17.

Clinical Utility of Prospective Molecular Characterization in Advanced Endometrial Cancer.

Soumerai TE, Donoghue MTA, Bandlamudi C, Srinivasan P, Chang MT, Zamarin D, Cadoo KA, Grisham RN, O'Cearbhaill RE, Tew WP, Konner JA, Hensley ML, Makker V, Sabbatini P, Spriggs DR, Troso-Sandoval TA, Charen AS, Friedman C, Gorsky M, Schweber SJ, Middha S, Murali R, Chiang S, Park KJ, Soslow RA, Ladanyi M, Li BT, Mueller J, Weigelt B, Zehir A, Berger MF, Abu-Rustum NR, Aghajanian C, DeLair DF, Solit DB, Taylor BS, Hyman DM.

Clin Cancer Res. 2018 Dec 1;24(23):5939-5947. doi: 10.1158/1078-0432.CCR-18-0412. Epub 2018 Aug 1.

PMID:
30068706
18.

Genome doubling shapes the evolution and prognosis of advanced cancers.

Bielski CM, Zehir A, Penson AV, Donoghue MTA, Chatila W, Armenia J, Chang MT, Schram AM, Jonsson P, Bandlamudi C, Razavi P, Iyer G, Robson ME, Stadler ZK, Schultz N, Baselga J, Solit DB, Hyman DM, Berger MF, Taylor BS.

Nat Genet. 2018 Aug;50(8):1189-1195. doi: 10.1038/s41588-018-0165-1. Epub 2018 Jul 16.

19.

Sterile marginal flowers increase visitation and fruit set in the hobblebush (Viburnum lantanoides, Adoxaceae) at multiple spatial scales.

Park B, Sinnott-Armstrong M, Schlutius C, Zuluaga JP, Spriggs EL, Simpson RG, Benavides E, Landis MJ, Sweeney PW, Eaton DAR, Donoghue MJ.

Ann Bot. 2019 Jan 23;123(2):381-390. doi: 10.1093/aob/mcy117.

PMID:
29982369
20.

Plant height and hydraulic vulnerability to drought and cold.

Olson ME, Soriano D, Rosell JA, Anfodillo T, Donoghue MJ, Edwards EJ, León-Gómez C, Dawson T, Camarero Martínez JJ, Castorena M, Echeverría A, Espinosa CI, Fajardo A, Gazol A, Isnard S, Lima RS, Marcati CR, Méndez-Alonzo R.

Proc Natl Acad Sci U S A. 2018 Jul 17;115(29):7551-7556. doi: 10.1073/pnas.1721728115. Epub 2018 Jul 2.

21.

Topological Data Analysis as a Morphometric Method: Using Persistent Homology to Demarcate a Leaf Morphospace.

Li M, An H, Angelovici R, Bagaza C, Batushansky A, Clark L, Coneva V, Donoghue MJ, Edwards E, Fajardo D, Fang H, Frank MH, Gallaher T, Gebken S, Hill T, Jansky S, Kaur B, Klahs PC, Klein LL, Kuraparthy V, Londo J, Migicovsky Z, Miller A, Mohn R, Myles S, Otoni WC, Pires JC, Rieffer E, Schmerler S, Spriggs E, Topp CN, Van Deynze A, Zhang K, Zhu L, Zink BM, Chitwood DH.

Front Plant Sci. 2018 Apr 25;9:553. doi: 10.3389/fpls.2018.00553. eCollection 2018.

22.

Reconciling species diversity in a tropical plant clade (Canarium, Burseraceae).

Federman S, Donoghue MJ, Daly DC, Eaton DAR.

PLoS One. 2018 Jun 15;13(6):e0198882. doi: 10.1371/journal.pone.0198882. eCollection 2018.

23.

Accelerating Pediatric Cancer Drug Development: Challenges and Opportunities for Pediatric Master Protocols.

Khan T, Stewart M, Blackman S, Rousseau R, Donoghue M, Cohen K, Seibel N, Fleury M, Benettaib B, Malik R, Vassal G, Reaman G.

Ther Innov Regul Sci. 2019 Mar;53(2):270-278. doi: 10.1177/2168479018774533. Epub 2018 May 14.

PMID:
29759018
24.

Oral carriage of cariogenic bacteria and Candida albicans in asthmatic adults before and after anti-asthma medication: A longitudinal study.

Ashuja RB, Nandini DB, Vidyasagar B, Ashwini R, Donoghue M, Madhushankari GS.

J Oral Maxillofac Pathol. 2018 Jan-Apr;22(1):144. doi: 10.4103/jomfp.JOMFP_235_15.

25.

Leaf Form Evolution in Viburnum Parallels Variation within Individual Plants.

Spriggs EL, Schmerler SB, Edwards EJ, Donoghue MJ.

Am Nat. 2018 Feb;191(2):235-249. doi: 10.1086/695337. Epub 2017 Dec 8.

PMID:
29351013
26.

Clinical Sequencing Defines the Genomic Landscape of Metastatic Colorectal Cancer.

Yaeger R, Chatila WK, Lipsyc MD, Hechtman JF, Cercek A, Sanchez-Vega F, Jayakumaran G, Middha S, Zehir A, Donoghue MTA, You D, Viale A, Kemeny N, Segal NH, Stadler ZK, Varghese AM, Kundra R, Gao J, Syed A, Hyman DM, Vakiani E, Rosen N, Taylor BS, Ladanyi M, Berger MF, Solit DB, Shia J, Saltz L, Schultz N.

Cancer Cell. 2018 Jan 8;33(1):125-136.e3. doi: 10.1016/j.ccell.2017.12.004.

27.

Genomic Characterization of Upper-Tract Urothelial Carcinoma in Patients With Lynch Syndrome.

Donahu TF, Bagrodia A, Audenet F, Donoghue MTA, Cha EK, Sfakianos JP, Sperling D, Al-Ahmadie H, Clendenning M, Rosty C, Buchanan DD, Jenkins M, Hopper J, Winship I, Templeton AS, Walsh MF, Stadler ZK, Iyer G, Taylor B, Coleman J, Lindor NM, Solit DB, Bochner BH.

JCO Precis Oncol. 2018;2018. doi: 10.1200/PO.17.00143.

28.

Accelerating Discovery of Functional Mutant Alleles in Cancer.

Chang MT, Bhattarai TS, Schram AM, Bielski CM, Donoghue MTA, Jonsson P, Chakravarty D, Phillips S, Kandoth C, Penson A, Gorelick A, Shamu T, Patel S, Harris C, Gao J, Sumer SO, Kundra R, Razavi P, Li BT, Reales DN, Socci ND, Jayakumaran G, Zehir A, Benayed R, Arcila ME, Chandarlapaty S, Ladanyi M, Schultz N, Baselga J, Berger MF, Rosen N, Solit DB, Hyman DM, Taylor BS.

Cancer Discov. 2018 Feb;8(2):174-183. doi: 10.1158/2159-8290.CD-17-0321. Epub 2017 Dec 15.

29.

FDA Benefit-Risk Assessment of Osimertinib for the Treatment of Metastatic Non-Small Cell Lung Cancer Harboring Epidermal Growth Factor Receptor T790M Mutation.

Odogwu L, Mathieu L, Goldberg KB, Blumenthal GM, Larkins E, Fiero MH, Rodriguez L, Bijwaard K, Lee EY, Philip R, Fan I, Donoghue M, Keegan P, McKee A, Pazdur R.

Oncologist. 2018 Mar;23(3):353-359. doi: 10.1634/theoncologist.2017-0425. Epub 2017 Dec 14.

30.

Modernizing Clinical Trial Eligibility: Recommendations of the American Society of Clinical Oncology-Friends of Cancer Research Minimum Age Working Group.

Gore L, Ivy SP, Balis FM, Rubin E, Thornton K, Donoghue M, Roberts S, Bruinooge S, Ersek J, Goodman N, Schenkel C, Reaman G.

J Clin Oncol. 2017 Nov 20;35(33):3781-3787. doi: 10.1200/JCO.2017.74.4144. Epub 2017 Oct 2.

31.

Immuno-Histochemical and Quantitative Study of Melanocytes and Melanin Granules in Oral Epithelial Dysplasia.

Honwad S, Ravi SV, Donoghue M, Joshi M.

J Clin Diagn Res. 2017 Jul;11(7):ZC56-ZC58. doi: 10.7860/JCDR/2017/26096.10206. Epub 2017 Jul 1.

32.

Prospective Genomic Profiling of Prostate Cancer Across Disease States Reveals Germline and Somatic Alterations That May Affect Clinical Decision Making.

Abida W, Armenia J, Gopalan A, Brennan R, Walsh M, Barron D, Danila D, Rathkopf D, Morris M, Slovin S, McLaughlin B, Curtis K, Hyman DM, Durack JC, Solomon SB, Arcila ME, Zehir A, Syed A, Gao J, Chakravarty D, Vargas HA, Robson ME, Joseph V, Offit K, Donoghue MTA, Abeshouse AA, Kundra R, Heins ZJ, Penson AV, Harris C, Taylor BS, Ladanyi M, Mandelker D, Zhang L, Reuter VE, Kantoff PW, Solit DB, Berger MF, Sawyers CL, Schultz N, Scher HI.

JCO Precis Oncol. 2017 Jul;2017. doi: 10.1200/PO.17.00029. Epub 2017 May 31.

33.

Future Benefits from Contemporary Evosystem Services: A Response to Rudman et al.

Faith DP, Magallón S, Hendry AP, Donoghue MJ.

Trends Ecol Evol. 2017 Oct;32(10):717-719. doi: 10.1016/j.tree.2017.07.005. Epub 2017 Aug 10. No abstract available.

PMID:
28803670
34.

Convergence, Consilience, and the Evolution of Temperate Deciduous Forests.

Edwards EJ, Chatelet DS, Chen BC, Ong JY, Tagane S, Kanemitsu H, Tagawa K, Teramoto K, Park B, Chung KF, Hu JM, Yahara T, Donoghue MJ.

Am Nat. 2017 Aug;190(S1):S87-S104. doi: 10.1086/692627. Epub 2017 May 24.

PMID:
28731827
35.

AKT Inhibition in Solid Tumors With AKT1 Mutations.

Hyman DM, Smyth LM, Donoghue MTA, Westin SN, Bedard PL, Dean EJ, Bando H, El-Khoueiry AB, Pérez-Fidalgo JA, Mita A, Schellens JHM, Chang MT, Reichel JB, Bouvier N, Selcuklu SD, Soumerai TE, Torrisi J, Erinjeri JP, Ambrose H, Barrett JC, Dougherty B, Foxley A, Lindemann JPO, McEwen R, Pass M, Schiavon G, Berger MF, Chandarlapaty S, Solit DB, Banerji U, Baselga J, Taylor BS.

J Clin Oncol. 2017 Jul 10;35(20):2251-2259. doi: 10.1200/JCO.2017.73.0143. Epub 2017 May 10. Erratum in: J Clin Oncol. 2019 Feb 1;37(4):360.

36.

Correlation, causation, and the evolution of leaf teeth: A reply to Givnish and Kriebel.

Edwards EJ, Chatelet DS, Spriggs EL, Johnson ES, Schlutius C, Donoghue MJ.

Am J Bot. 2017 Apr;104(4):509-515. doi: 10.3732/ajb.1700075. Epub 2017 Apr 20. No abstract available.

37.

Diagnostic accuracy of salivary creatinine, urea, and potassium levels to assess dialysis need in renal failure patients.

Bagalad BS, Mohankumar KP, Madhushankari GS, Donoghue M, Kuberappa PH.

Dent Res J (Isfahan). 2017 Jan-Feb;14(1):13-18.

38.

Maximising Synergy among Tropical Plant Systematists, Ecologists, and Evolutionary Biologists.

Baker TR, Pennington RT, Dexter KG, Fine PVA, Fortune-Hopkins H, Honorio EN, Huamantupa-Chuquimaco I, Klitgård BB, Lewis GP, de Lima HC, Ashton P, Baraloto C, Davies S, Donoghue MJ, Kaye M, Kress WJ, Lehmann CER, Monteagudo A, Phillips OL, Vasquez R.

Trends Ecol Evol. 2017 Apr;32(4):258-267. doi: 10.1016/j.tree.2017.01.007. Epub 2017 Feb 16. Review.

39.

Focusing on Core Patient-Reported Outcomes in Cancer Clinical Trials-Response.

Kluetz PG, Papadopoulos EJ, Johnson LL, Donoghue M, Kwitkowski VE, Chen WH, Sridhara R, Farrell AT, Keegan P, Kim G, Pazdur R.

Clin Cancer Res. 2016 Nov 15;22(22):5618. doi: 10.1158/1078-0432.CCR-16-2140. No abstract available.

40.

Characterization of 16 microsatellite markers for the Oreinotinus clade of Viburnum (Adoxaceae).

Barish S, Arakaki M, Edwards EJ, Donoghue MJ, Clement WL.

Appl Plant Sci. 2016 Dec 8;4(12). pii: apps.1600103. doi: 10.3732/apps.1600103. eCollection 2016 Dec.

41.

The Paucity of Frugivores in Madagascar May Not Be Due to Unpredictable Temperatures or Fruit Resources.

Federman S, Sinnott-Armstrong M, Baden AL, Chapman CA, Daly DC, Richard AR, Valenta K, Donoghue MJ.

PLoS One. 2017 Jan 13;12(1):e0168943. doi: 10.1371/journal.pone.0168943. eCollection 2017.

42.

Different clades and traits yield similar grassland functional responses.

Forrestel EJ, Donoghue MJ, Edwards EJ, Jetz W, du Toit JC, Smith MD.

Proc Natl Acad Sci U S A. 2017 Jan 24;114(4):705-710. doi: 10.1073/pnas.1612909114. Epub 2017 Jan 10.

43.

Misconceptions on Missing Data in RAD-seq Phylogenetics with a Deep-scale Example from Flowering Plants.

Eaton DAR, Spriggs EL, Park B, Donoghue MJ.

Syst Biol. 2017 May 1;66(3):399-412. doi: 10.1093/sysbio/syw092.

PMID:
27798402
44.

Marine pollution originating from purse seine and longline fishing vessel operations in the Western and Central Pacific Ocean, 2003-2015.

Richardson K, Haynes D, Talouli A, Donoghue M.

Ambio. 2017 Mar;46(2):190-200. doi: 10.1007/s13280-016-0811-8. Epub 2016 Aug 27.

45.

Hydraulic basis for the evolution of photosynthetic productivity.

Scoffoni C, Chatelet DS, Pasquet-Kok J, Rawls M, Donoghue MJ, Edwards EJ, Sack L.

Nat Plants. 2016 May 27;2(6):16072. doi: 10.1038/nplants.2016.72.

PMID:
27255836
46.

Unpacking a century-old mystery: Winter buds and the latitudinal gradient in leaf form.

Edwards EJ, Spriggs EL, Chatelet DS, Donoghue MJ.

Am J Bot. 2016 Jun;103(6):975-8. doi: 10.3732/ajb.1600129. Epub 2016 May 24. No abstract available.

47.

Implications of lemuriform extinctions for the Malagasy flora.

Federman S, Dornburg A, Daly DC, Downie A, Perry GH, Yoder AD, Sargis EJ, Richard AF, Donoghue MJ, Baden AL.

Proc Natl Acad Sci U S A. 2016 May 3;113(18):5041-6. doi: 10.1073/pnas.1523825113. Epub 2016 Apr 11.

48.

A rapid manual processing technique for resource-limited small laboratories.

Jali PK, Donoghue M, Gadiwan M.

J Oral Maxillofac Pathol. 2015 Sep-Dec;19(3):306-14. doi: 10.4103/0973-029X.174616.

49.
50.

Comparison of the validity of two dental age estimation methods: A study on South Indian population.

Shruthi BS, Donoghue M, Selvamani M, Kumar PV.

J Forensic Dent Sci. 2015 Sep-Dec;7(3):189-94. doi: 10.4103/0975-1475.172431.

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