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Items: 41

1.

Genome sequencing and transcript analysis of Hemileia vastatrix reveal expression dynamics of candidate effectors dependent on host compatibility.

Porto BN, Caixeta ET, Mathioni SM, Vidigal PMP, Zambolim L, Zambolim EM, Donofrio N, Polson SW, Maia TA, Chen C, Adetunji M, Kingham B, Dalio RJD, Resende MLV.

PLoS One. 2019 Apr 18;14(4):e0215598. doi: 10.1371/journal.pone.0215598. eCollection 2019.

2.

Complete Genome Sequence of Spiroplasma phoeniceum Strain P40T, a Plant Pathogen Isolated from Diseased Plants of Madagascar Periwinkle [Catharanthus roseus (L.) G. Don].

Davis RE, Shao J, Zhao Y, Wei W, Bottner-Parker K, Silver A, Stump Z, Gasparich GE, Donofrio N.

Microbiol Resour Announc. 2019 Mar 21;8(12). pii: e01612-18. doi: 10.1128/MRA.01612-18.

3.

Characterizing Small RNAs in Filamentous Fungi Using the Rice Blast Fungus, Magnaporthe oryzae, as an Example.

Raman V, Meyers BC, Dean RA, Donofrio NM.

Methods Mol Biol. 2018;1848:53-66. doi: 10.1007/978-1-4939-8724-5_5.

PMID:
30182228
4.

Marker-Assisted Molecular Profiling, Deletion Mutant Analysis, and RNA-Seq Reveal a Disease Resistance Cluster Associated with Uromyces appendiculatus Infection in Common Bean Phaseolus vulgaris L.

Todd AR, Donofrio N, Sripathi VR, McClean PE, Lee RK, Pastor-Corrales M, Kalavacharla VK.

Int J Mol Sci. 2017 May 23;18(6). pii: E1109. doi: 10.3390/ijms18061109.

5.

Small RNA Functions Are Required for Growth and Development of Magnaporthe oryzae.

Raman V, Simon SA, Demirci F, Nakano M, Meyers BC, Donofrio NM.

Mol Plant Microbe Interact. 2017 Jul;30(7):517-530. doi: 10.1094/MPMI-11-16-0236-R. Epub 2017 May 15.

6.

Complete Genome Sequence of Spiroplasma citri Strain R8-A2T, Causal Agent of Stubborn Disease in Citrus Species.

Davis RE, Shao J, Zhao Y, Gasparich GE, Gaynor BJ, Donofrio N.

Genome Announc. 2017 Apr 20;5(16). pii: e00206-17. doi: 10.1128/genomeA.00206-17.

7.

Genotyping-by-Sequencing to Predict Resistance to Lima Bean Downy Mildew in a Diversity Panel.

Mhora TT, Ernest EG, Wisser RJ, Evans TA, Patzoldt ME, Gregory NF, Westhafer SE, Polson SW, Donofrio NM.

Phytopathology. 2016 Oct;106(10):1152-1158. Epub 2016 Aug 22.

8.

Generic names in Magnaporthales.

Zhang N, Luo J, Rossman AY, Aoki T, Chuma I, Crous PW, Dean R, de Vries RP, Donofrio N, Hyde KD, Lebrun MH, Talbot NJ, Tharreau D, Tosa Y, Valent B, Wang Z, Xu JR.

IMA Fungus. 2016 Jun;7(1):155-9. doi: 10.5598/imafungus.2016.07.01.09. Epub 2016 Jun 8.

9.

Optimization of the HyPer sensor for robust real-time detection of hydrogen peroxide in the rice blast fungus.

Huang K, Caplan J, Sweigard JA, Czymmek KJ, Donofrio NM.

Mol Plant Pathol. 2017 Feb;18(2):298-307. doi: 10.1111/mpp.12392. Epub 2016 Jun 9.

PMID:
26950262
10.

Crucial Roles of Abscisic Acid Biogenesis in Virulence of Rice Blast Fungus Magnaporthe oryzae.

Spence CA, Lakshmanan V, Donofrio N, Bais HP.

Front Plant Sci. 2015 Dec 1;6:1082. doi: 10.3389/fpls.2015.01082. eCollection 2015.

11.

Complete Genome Sequence of Spiroplasma turonicum Strain Tab4cT, a Parasite of a Horse Fly, Haematopota sp. (Diptera: Tabanidae).

Davis RE, Shao J, Zhao Y, Gasparich GE, Gaynor BJ, Donofrio N.

Genome Announc. 2015 Nov 19;3(6). pii: e01367-15. doi: 10.1128/genomeA.01367-15.

12.

Complete Genome Sequence of Spiroplasma kunkelii Strain CR2-3x, Causal Agent of Corn Stunt Disease in Zea mays L.

Davis RE, Shao J, Dally EL, Zhao Y, Gasparich GE, Gaynor BJ, Athey JC, Harrison NA, Donofrio N.

Genome Announc. 2015 Oct 22;3(5). pii: e01216-15. doi: 10.1128/genomeA.01216-15.

13.

Plant biomass degradation by fungi.

Mäkelä M, Donofrio N, de Vries R.

Fungal Genet Biol. 2014 Nov;72:1. doi: 10.1016/j.fgb.2014.09.003. Epub 2014 Sep 20. No abstract available.

PMID:
25241328
14.

Plant biomass degradation by fungi.

Mäkelä MR, Donofrio N, de Vries RP.

Fungal Genet Biol. 2014 Nov;72:2-9. doi: 10.1016/j.fgb.2014.08.010. Epub 2014 Sep 3.

PMID:
25192611
15.

Natural rice rhizospheric microbes suppress rice blast infections.

Spence C, Alff E, Johnson C, Ramos C, Donofrio N, Sundaresan V, Bais H.

BMC Plant Biol. 2014 May 13;14:130. doi: 10.1186/1471-2229-14-130.

16.

Redox and rice blast: new tools for dissecting molecular fungal-plant interactions.

Donofrio NM, Wilson RA.

New Phytol. 2014 Jan;201(2):367-9. doi: 10.1111/nph.12623. No abstract available.

17.

Global gene expression in rice blast pathogen Magnaporthe oryzae treated with a natural rice soil isolate.

Spence CA, Raman V, Donofrio NM, Bais HP.

Planta. 2014 Jan;239(1):171-85. doi: 10.1007/s00425-013-1974-1. Epub 2013 Oct 15.

PMID:
24126723
18.

Transcriptomics of the rice blast fungus Magnaporthe oryzae in response to the bacterial antagonist Lysobacter enzymogenes reveals candidate fungal defense response genes.

Mathioni SM, Patel N, Riddick B, Sweigard JA, Czymmek KJ, Caplan JL, Kunjeti SG, Kunjeti S, Raman V, Hillman BI, Kobayashi DY, Donofrio NM.

PLoS One. 2013 Oct 3;8(10):e76487. doi: 10.1371/journal.pone.0076487. eCollection 2013.

19.

Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae.

Raman V, Simon SA, Romag A, Demirci F, Mathioni SM, Zhai J, Meyers BC, Donofrio NM.

BMC Genomics. 2013 May 12;14:326. doi: 10.1186/1471-2164-14-326.

20.

Roles and delivery mechanisms of fungal effectors during infection development: common threads and new directions.

Donofrio NM, Raman V.

Curr Opin Microbiol. 2012 Dec;15(6):692-8. doi: 10.1016/j.mib.2012.10.004. Epub 2012 Nov 16. Review.

PMID:
23164582
21.

RNA-Seq reveals infection-related global gene changes in Phytophthora phaseoli, the causal agent of lima bean downy mildew.

Kunjeti SG, Evans TA, Marsh AG, Gregory NF, Kunjeti S, Meyers BC, Kalavacharla VS, Donofrio NM.

Mol Plant Pathol. 2012 Jun;13(5):454-66. doi: 10.1111/j.1364-3703.2011.00761.x. Epub 2011 Nov 24.

PMID:
22112294
22.

Suppression of plant-generated reactive oxygen species is required for successful infection by the rice blast fungus.

Huang K, Czymmek KJ, Caplan JL, Sweigard JA, Donofrio NM.

Virulence. 2011 Nov-Dec;2(6):559-62. doi: 10.4161/viru.2.6.18007. Epub 2011 Nov 1.

PMID:
21971181
23.

Getting the most out of your fungal microarray data: two cost- and time-effective methods.

Mathioni SM, Beló A, Townsend JP, Donofrio NM.

Methods Mol Biol. 2011;722:61-77. doi: 10.1007/978-1-61779-040-9_5.

PMID:
21590413
24.

HYR1-mediated detoxification of reactive oxygen species is required for full virulence in the rice blast fungus.

Huang K, Czymmek KJ, Caplan JL, Sweigard JA, Donofrio NM.

PLoS Pathog. 2011 Apr;7(4):e1001335. doi: 10.1371/journal.ppat.1001335. Epub 2011 Apr 14.

25.

Transcriptome profiling of the rice blast fungus during invasive plant infection and in vitro stresses.

Mathioni SM, Beló A, Rizzo CJ, Dean RA, Donofrio NM.

BMC Genomics. 2011 Jan 19;12:49. doi: 10.1186/1471-2164-12-49.

26.

Genome evolution following host jumps in the Irish potato famine pathogen lineage.

Raffaele S, Farrer RA, Cano LM, Studholme DJ, MacLean D, Thines M, Jiang RH, Zody MC, Kunjeti SG, Donofrio NM, Meyers BC, Nusbaum C, Kamoun S.

Science. 2010 Dec 10;330(6010):1540-3. doi: 10.1126/science.1193070.

27.

The rhizobacterial elicitor acetoin induces systemic resistance in Arabidopsis thaliana.

Rudrappa T, Biedrzycki ML, Kunjeti SG, Donofrio NM, Czymmek KJ, Paré PW, Bais HP.

Commun Integr Biol. 2010 Mar;3(2):130-8.

28.

Transcriptome analysis reveals new insight into appressorium formation and function in the rice blast fungus Magnaporthe oryzae.

Oh Y, Donofrio N, Pan H, Coughlan S, Brown DE, Meng S, Mitchell T, Dean RA.

Genome Biol. 2008;9(5):R85. doi: 10.1186/gb-2008-9-5-r85. Epub 2008 May 20.

29.

Development of a high throughput transformation system for insertional mutagenesis in Magnaporthe oryzae.

Betts MF, Tucker SL, Galadima N, Meng Y, Patel G, Li L, Donofrio N, Floyd A, Nolin S, Brown D, Mandel MA, Mitchell TK, Xu JR, Dean RA, Farman ML, Orbach MJ.

Fungal Genet Biol. 2007 Oct;44(10):1035-49. Epub 2007 May 18.

PMID:
17600737
30.

A systematic analysis of T-DNA insertion events in Magnaporthe oryzae.

Meng Y, Patel G, Heist M, Betts MF, Tucker SL, Galadima N, Donofrio NM, Brown D, Mitchell TK, Li L, Xu JR, Orbach M, Thon M, Dean RA, Farman ML.

Fungal Genet Biol. 2007 Oct;44(10):1050-64.

PMID:
17544743
31.

Global gene expression during nitrogen starvation in the rice blast fungus, Magnaporthe grisea.

Donofrio NM, Oh Y, Lundy R, Pan H, Brown DE, Jeong JS, Coughlan S, Mitchell TK, Dean RA.

Fungal Genet Biol. 2006 Sep;43(9):605-17. Epub 2006 May 30.

PMID:
16731015
32.

Fungal biology reaps the benefit of genomics.

Dean R, Mitchell T, Donofrio N, Jeong JS, Powell A.

Genome Biol. 2005;6(8):336. Epub 2005 Jul 28.

33.

The genome sequence of the rice blast fungus Magnaporthe grisea.

Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YH, Carbone I, Brown D, Oh YY, Donofrio N, Jeong JS, Soanes DM, Djonovic S, Kolomiets E, Rehmeyer C, Li W, Harding M, Kim S, Lebrun MH, Bohnert H, Coughlan S, Butler J, Calvo S, Ma LJ, Nicol R, Purcell S, Nusbaum C, Galagan JE, Birren BW.

Nature. 2005 Apr 21;434(7036):980-6.

PMID:
15846337
34.

'PACLIMS': a component LIM system for high-throughput functional genomic analysis.

Donofrio N, Rajagopalon R, Brown D, Diener S, Windham D, Nolin S, Floyd A, Mitchell T, Galadima N, Tucker S, Orbach MJ, Patel G, Farman M, Pampanwar V, Soderlund C, Lee YH, Dean RA.

BMC Bioinformatics. 2005 Apr 12;6:94.

35.

Salicylic acid and NIM1/NPR1-independent gene induction by incompatible Peronospora parasitica in arabidopsis.

Rairdan GJ, Donofrio NM, Delaney TP.

Mol Plant Microbe Interact. 2001 Oct;14(10):1235-46.

37.

Differences between nouns and verbs after anterior temporal lobectomy.

Glosser G, Donofrio N.

Neuropsychology. 2001 Jan;15(1):39-47.

PMID:
11216888
38.

Use of the MMPI and MMPI-2 in patients being evaluated for cardiac transplant.

Trunzo JJ, Petrucci RJ, Carter A, Donofrio N.

Psychol Rep. 1999 Dec;85(3 Pt 2):1105-10.

PMID:
10710964
39.

Hemispheric asymmetries in arousal affect outcome of the intracarotid amobarbital test.

Glosser G, Cole LC, Deutsch GK, Donofrio N, Bagley L, Baltuch G, French JA.

Neurology. 1999 May 12;52(8):1583-90.

PMID:
10331682
40.

Interhemispheric memory transfer in the intracarotid amobarbital procedure.

Perrine K, Donofrio N, Devinsky O, Gershengorn J, Luciano DJ, Nelson PK.

Neuropsychiatry Neuropsychol Behav Neurol. 1998 Jan;11(1):8-11.

PMID:
9560823
41.

Investigating the efficacy of current quality assurance performance tests in diagnostic ultrasound.

Donofrio NM Jr, Hanson JA, Hirsch JH, Moore WE.

J Clin Ultrasound. 1984 Jun;12(5):251-60.

PMID:
6429201

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