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Environmental suitability for lymphatic filariasis in Nigeria.

Eneanya OA, Cano J, Dorigatti I, Anagbogu I, Okoronkwo C, Garske T, Donnelly CA.

Parasit Vectors. 2018 Sep 17;11(1):513. doi: 10.1186/s13071-018-3097-9.


Refined efficacy estimates of the Sanofi Pasteur dengue vaccine CYD-TDV using machine learning.

Dorigatti I, Donnelly CA, Laydon DJ, Small R, Jackson N, Coudeville L, Ferguson NM.

Nat Commun. 2018 Sep 7;9(1):3644. doi: 10.1038/s41467-018-06006-6.


Computational modelling for decision-making: where, why, what, who and how.

Calder M, Craig C, Culley D, de Cani R, Donnelly CA, Douglas R, Edmonds B, Gascoigne J, Gilbert N, Hargrove C, Hinds D, Lane DC, Mitchell D, Pavey G, Robertson D, Rosewell B, Sherwin S, Walport M, Wilson A.

R Soc Open Sci. 2018 Jun 20;5(6):172096. doi: 10.1098/rsos.172096. eCollection 2018 Jun. Review.


Four principles to make evidence synthesis more useful for policy.

Donnelly CA, Boyd I, Campbell P, Craig C, Vallance P, Walport M, Whitty CJM, Woods E, Wormald C.

Nature. 2018 Jun;558(7710):361-364. doi: 10.1038/d41586-018-05414-4. No abstract available.


Cluster-Randomized Test-Negative Design Trials: A Novel and Efficient Method to Assess the Efficacy of Community-Level Dengue Interventions.

Anders KL, Cutcher Z, Kleinschmidt I, Donnelly CA, Ferguson NM, Indriani C, Ryan PA, O'Neill SL, Jewell NP, Simmons CP.

Am J Epidemiol. 2018 Sep 1;187(9):2021-2028. doi: 10.1093/aje/kwy099.


Ultralow power artificial synapses using nanotextured magnetic Josephson junctions.

Schneider ML, Donnelly CA, Russek SE, Baek B, Pufall MR, Hopkins PF, Dresselhaus PD, Benz SP, Rippard WH.

Sci Adv. 2018 Jan 26;4(1):e1701329. doi: 10.1126/sciadv.1701329. eCollection 2018 Jan.


Interpreting ambiguous 'trace' results in Schistosoma mansoni CCA Tests: Estimating sensitivity and specificity of ambiguous results with no gold standard.

Clements MN, Donnelly CA, Fenwick A, Kabatereine NB, Knowles SCL, Meité A, N'Goran EK, Nalule Y, Nogaro S, Phillips AE, Tukahebwa EM, Fleming FM.

PLoS Negl Trop Dis. 2017 Dec 8;11(12):e0006102. doi: 10.1371/journal.pntd.0006102. eCollection 2017 Dec.


Assessing the effects of the first 2 years of industry-led badger culling in England on the incidence of bovine tuberculosis in cattle in 2013-2015.

Brunton LA, Donnelly CA, O'Connor H, Prosser A, Ashfield S, Ashton A, Upton P, Mitchell A, Goodchild AV, Parry JE, Downs SH.

Ecol Evol. 2017 Aug 4;7(18):7213-7230. doi: 10.1002/ece3.3254. eCollection 2017 Sep.


International risk of yellow fever spread from the ongoing outbreak in Brazil, December 2016 to May 2017.

Dorigatti I, Hamlet A, Aguas R, Cattarino L, Cori A, Donnelly CA, Garske T, Imai N, Ferguson NM.

Euro Surveill. 2017 Jul 13;22(28). pii: 30572. doi: 10.2807/1560-7917.ES.2017.22.28.30572.


Key data for outbreak evaluation: building on the Ebola experience.

Cori A, Donnelly CA, Dorigatti I, Ferguson NM, Fraser C, Garske T, Jombart T, Nedjati-Gilani G, Nouvellet P, Riley S, Van Kerkhove MD, Mills HL, Blake IM.

Philos Trans R Soc Lond B Biol Sci. 2017 May 26;372(1721). pii: 20160371. doi: 10.1098/rstb.2016.0371. Review.


Heterogeneities in the case fatality ratio in the West African Ebola outbreak 2013-2016.

Garske T, Cori A, Ariyarajah A, Blake IM, Dorigatti I, Eckmanns T, Fraser C, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Newton E, Nouvellet P, Perkins D, Riley S, Schumacher D, Shah A, Van Kerkhove MD, Dye C, Ferguson NM, Donnelly CA.

Philos Trans R Soc Lond B Biol Sci. 2017 May 26;372(1721). pii: 20160308. doi: 10.1098/rstb.2016.0308.


A simple approach to measure transmissibility and forecast incidence.

Nouvellet P, Cori A, Garske T, Blake IM, Dorigatti I, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Van Kerkhove MD, Fraser C, Donnelly CA, Ferguson NM, Riley S.

Epidemics. 2018 Mar;22:29-35. doi: 10.1016/j.epidem.2017.02.012. Epub 2017 Feb 24.


Early warning of footpad dermatitis and hockburn in broiler chicken flocks using optical flow, bodyweight and water consumption.

Dawkins MS, Roberts SJ, Cain RJ, Nickson T, Donnelly CA.

Vet Rec. 2017 May 20;180(20):499. doi: 10.1136/vr.104066. Epub 2017 Feb 27.


Assessing the interruption of the transmission of human helminths with mass drug administration alone: optimizing the design of cluster randomized trials.

Anderson R, Farrell S, Turner H, Walson J, Donnelly CA, Truscott J.

Parasit Vectors. 2017 Feb 17;10(1):93. doi: 10.1186/s13071-017-1979-x.


A Meta-Analysis of Serological Response Associated with Yellow Fever Vaccination.

Jean K, Donnelly CA, Ferguson NM, Garske T.

Am J Trop Med Hyg. 2016 Dec 7;95(6):1435-1439. Epub 2016 Oct 10.


Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study.

International Ebola Response Team, Agua-Agum J, Ariyarajah A, Aylward B, Bawo L, Bilivogui P, Blake IM, Brennan RJ, Cawthorne A, Cleary E, Clement P, Conteh R, Cori A, Dafae F, Dahl B, Dangou JM, Diallo B, Donnelly CA, Dorigatti I, Dye C, Eckmanns T, Fallah M, Ferguson NM, Fiebig L, Fraser C, Garske T, Gonzalez L, Hamblion E, Hamid N, Hersey S, Hinsley W, Jambei A, Jombart T, Kargbo D, Keita S, Kinzer M, George FK, Godefroy B, Gutierrez G, Kannangarage N, Mills HL, Moller T, Meijers S, Mohamed Y, Morgan O, Nedjati-Gilani G, Newton E, Nouvellet P, Nyenswah T, Perea W, Perkins D, Riley S, Rodier G, Rondy M, Sagrado M, Savulescu C, Schafer IJ, Schumacher D, Seyler T, Shah A, Van Kerkhove MD, Wesseh CS, Yoti Z.

PLoS Med. 2016 Nov 15;13(11):e1002170. doi: 10.1371/journal.pmed.1002170. eCollection 2016 Nov.


Localised Badger Culling Increases Risk of Herd Breakdown on Nearby, Not Focal, Land.

Bielby J, Vial F, Woodroffe R, Donnelly CA.

PLoS One. 2016 Oct 17;11(10):e0164618. doi: 10.1371/journal.pone.0164618. eCollection 2016.


Kovachy et al. reply.

Kovachy T, Asenbaum P, Overstreet C, Donnelly CA, Dickerson SM, Sugarbaker A, Hogan JM, Stamper-Kurn MA.

Nature. 2016 Sep 1;537(7618):E2-3. doi: 10.1038/nature19109. No abstract available.


After Ebola in West Africa--Unpredictable Risks, Preventable Epidemics.

WHO Ebola Response Team, Agua-Agum J, Allegranzi B, Ariyarajah A, Aylward R, Blake IM, Barboza P, Bausch D, Brennan RJ, Clement P, Coffey P, Cori A, Donnelly CA, Dorigatti I, Drury P, Durski K, Dye C, Eckmanns T, Ferguson NM, Fraser C, Garcia E, Garske T, Gasasira A, Gurry C, Hamblion E, Hinsley W, Holden R, Holmes D, Hugonnet S, Jaramillo Gutierrez G, Jombart T, Kelley E, Santhana R, Mahmoud N, Mills HL, Mohamed Y, Musa E, Naidoo D, Nedjati-Gilani G, Newton E, Norton I, Nouvellet P, Perkins D, Perkins M, Riley S, Schumacher D, Shah A, Tang M, Varsaneux O, Van Kerkhove MD.

N Engl J Med. 2016 Aug 11;375(6):587-96. doi: 10.1056/NEJMsr1513109. No abstract available.


Badgers prefer cattle pasture but avoid cattle: implications for bovine tuberculosis control.

Woodroffe R, Donnelly CA, Ham C, Jackson SY, Moyes K, Chapman K, Stratton NG, Cartwright SJ.

Ecol Lett. 2016 Oct;19(10):1201-8. doi: 10.1111/ele.12654. Epub 2016 Aug 4.


Unraveling the drivers of MERS-CoV transmission.

Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, AlHarbi K, Turkistani A, Aguas RJ, Cummings DA, Van Kerkhove MD, Donnelly CA, Lessler J, Fraser C, Al-Barrak A, Ferguson NM.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9081-6. doi: 10.1073/pnas.1519235113. Epub 2016 Jul 25.


Contact transmission of influenza virus between ferrets imposes a looser bottleneck than respiratory droplet transmission allowing propagation of antiviral resistance.

Frise R, Bradley K, van Doremalen N, Galiano M, Elderfield RA, Stilwell P, Ashcroft JW, Fernandez-Alonso M, Miah S, Lackenby A, Roberts KL, Donnelly CA, Barclay WS.

Sci Rep. 2016 Jul 19;6:29793. doi: 10.1038/srep29793.


EPIDEMIOLOGY. Countering the Zika epidemic in Latin America.

Ferguson NM, Cucunubá ZM, Dorigatti I, Nedjati-Gilani GL, Donnelly CA, Basáñez MG, Nouvellet P, Lessler J.

Science. 2016 Jul 22;353(6297):353-4. doi: 10.1126/science.aag0219. Epub 2016 Jul 14. No abstract available.


How would a decision to leave the European Union affect medical research and health in the United Kingdom?

Majeed A, Hansell A, Saxena S, Millett C, Ward H, Harris M, Hayhoe B, Car J, Easton G, Donnelly CA, Perneczky R, Jarvelin MR, Ezzati M, Rawaf S, Vineis P, Ferguson N, Riboli E.

J R Soc Med. 2016 May 24. pii: 0141076816652027. [Epub ahead of print] No abstract available.


Occupational therapy in primary care: Results from a national survey.

Donnelly CA, Leclair LL, Wener PF, Hand CL, Letts LJ.

Can J Occup Ther. 2016 Apr 12. pii: 0008417416637186. [Epub ahead of print]


Revealing the Micro-scale Signature of Endemic Zoonotic Disease Transmission in an African Urban Setting.

Bourhy H, Nakouné E, Hall M, Nouvellet P, Lepelletier A, Talbi C, Watier L, Holmes EC, Cauchemez S, Lemey P, Donnelly CA, Rambaut A.

PLoS Pathog. 2016 Apr 8;12(4):e1005525. doi: 10.1371/journal.ppat.1005525. eCollection 2016 Apr.


Faster Detection of Poliomyelitis Outbreaks to Support Polio Eradication.

Blake IM, Chenoweth P, Okayasu H, Donnelly CA, Aylward RB, Grassly NC.

Emerg Infect Dis. 2016 Mar;22(3):449-56. doi: 10.3201/eid2203.151394.


Ebola Virus Disease among Male and Female Persons in West Africa.

WHO Ebola Response Team, Agua-Agum J, Ariyarajah A, Blake IM, Cori A, Donnelly CA, Dorigatti I, Dye C, Eckmanns T, Ferguson NM, Fraser C, Garske T, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Newton E, Nouvellet P, Perkins D, Riley S, Schumacher D, Shah A, Thomas LJ, Van Kerkhove MD.

N Engl J Med. 2016 Jan 7;374(1):96-8. doi: 10.1056/NEJMc1510305. No abstract available.


Quantum superposition at the half-metre scale.

Kovachy T, Asenbaum P, Overstreet C, Donnelly CA, Dickerson SM, Sugarbaker A, Hogan JM, Kasevich MA.

Nature. 2015 Dec 24;528(7583):530-3. doi: 10.1038/nature16155.


The role of rapid diagnostics in managing Ebola epidemics.

Nouvellet P, Garske T, Mills HL, Nedjati-Gilani G, Hinsley W, Blake IM, Van Kerkhove MD, Cori A, Dorigatti I, Jombart T, Riley S, Fraser C, Donnelly CA, Ferguson NM.

Nature. 2015 Dec 3;528(7580):S109-16. doi: 10.1038/nature16041.


Dispersal of Engineered Male Aedes aegypti Mosquitoes.

Winskill P, Carvalho DO, Capurro ML, Alphey L, Donnelly CA, McKemey AR.

PLoS Negl Trop Dis. 2015 Nov 10;9(11):e0004156. doi: 10.1371/journal.pntd.0004156. eCollection 2015 Nov.


Bovine tuberculosis: Badger-cull targets unlikely to reduce TB.

Donnelly CA, Woodroffe R.

Nature. 2015 Oct 29;526(7575):640. doi: 10.1038/526640c. No abstract available.


Exploration of the power of routine surveillance data to assess the impacts of industry-led badger culling on bovine tuberculosis incidence in cattle herds.

Donnelly CA, Bento AI, Goodchild AV, Downs SH.

Vet Rec. 2015 Oct 24;177(16):417. doi: 10.1136/vr.103201. Epub 2015 Sep 15.


Potential Biases in Estimating Absolute and Relative Case-Fatality Risks during Outbreaks.

Lipsitch M, Donnelly CA, Fraser C, Blake IM, Cori A, Dorigatti I, Ferguson NM, Garske T, Mills HL, Riley S, Van Kerkhove MD, Hernán MA.

PLoS Negl Trop Dis. 2015 Jul 16;9(7):e0003846. doi: 10.1371/journal.pntd.0003846. eCollection 2015. Review.


Suppression of a Field Population of Aedes aegypti in Brazil by Sustained Release of Transgenic Male Mosquitoes.

Carvalho DO, McKemey AR, Garziera L, Lacroix R, Donnelly CA, Alphey L, Malavasi A, Capurro ML.

PLoS Negl Trop Dis. 2015 Jul 2;9(7):e0003864. doi: 10.1371/journal.pntd.0003864. eCollection 2015.


Modelling the immunological response to a tetravalent dengue vaccine from multiple phase-2 trials in Latin America and South East Asia.

Dorigatti I, Aguas R, Donnelly CA, Guy B, Coudeville L, Jackson N, Saville M, Ferguson NM.

Vaccine. 2015 Jul 17;33(31):3746-51. doi: 10.1016/j.vaccine.2015.05.059. Epub 2015 Jun 4.


A review of epidemiological parameters from Ebola outbreaks to inform early public health decision-making.

Van Kerkhove MD, Bento AI, Mills HL, Ferguson NM, Donnelly CA.

Sci Data. 2015 May 26;2:150019. doi: 10.1038/sdata.2015.19. eCollection 2015.


Matter wave lensing to picokelvin temperatures.

Kovachy T, Hogan JM, Sugarbaker A, Dickerson SM, Donnelly CA, Overstreet C, Kasevich MA.

Phys Rev Lett. 2015 Apr 10;114(14):143004. Epub 2015 Apr 8.


Transmission Potential of Influenza A(H7N9) Virus, China, 2013-2014.

Kucharski AJ, Mills HL, Donnelly CA, Riley S.

Emerg Infect Dis. 2015 May;21(5):852-5. doi: 10.3201/eid2105.141137.


Ebola virus disease among children in West Africa.

WHO Ebola Response Team, Agua-Agum J, Ariyarajah A, Blake IM, Cori A, Donnelly CA, Dorigatti I, Dye C, Eckmanns T, Ferguson NM, Fowler RA, Fraser C, Garske T, Hinsley W, Jombart T, Mills HL, Murthy S, Nedjati Gilani G, Nouvellet P, Pelletier L, Riley S, Schumacher D, Shah A, Van Kerkhove MD.

N Engl J Med. 2015 Mar 26;372(13):1274-7. doi: 10.1056/NEJMc1415318. No abstract available.


West African Ebola epidemic after one year--slowing but not yet under control.

WHO Ebola Response Team, Agua-Agum J, Ariyarajah A, Aylward B, Blake IM, Brennan R, Cori A, Donnelly CA, Dorigatti I, Dye C, Eckmanns T, Ferguson NM, Formenty P, Fraser C, Garcia E, Garske T, Hinsley W, Holmes D, Hugonnet S, Iyengar S, Jombart T, Krishnan R, Meijers S, Mills HL, Mohamed Y, Nedjati-Gilani G, Newton E, Nouvellet P, Pelletier L, Perkins D, Riley S, Sagrado M, Schnitzler J, Schumacher D, Shah A, Van Kerkhove MD, Varsaneux O, Wijekoon Kannangarage N.

N Engl J Med. 2015 Feb 5;372(6):584-7. doi: 10.1056/NEJMc1414992. Epub 2014 Dec 24. No abstract available.


Ebola virus disease in West Africa--the first 9 months of the epidemic and forward projections.

WHO Ebola Response Team, Aylward B, Barboza P, Bawo L, Bertherat E, Bilivogui P, Blake I, Brennan R, Briand S, Chakauya JM, Chitala K, Conteh RM, Cori A, Croisier A, Dangou JM, Diallo B, Donnelly CA, Dye C, Eckmanns T, Ferguson NM, Formenty P, Fuhrer C, Fukuda K, Garske T, Gasasira A, Gbanyan S, Graaff P, Heleze E, Jambai A, Jombart T, Kasolo F, Kadiobo AM, Keita S, Kertesz D, Koné M, Lane C, Markoff J, Massaquoi M, Mills H, Mulba JM, Musa E, Myhre J, Nasidi A, Nilles E, Nouvellet P, Nshimirimana D, Nuttall I, Nyenswah T, Olu O, Pendergast S, Perea W, Polonsky J, Riley S, Ronveaux O, Sakoba K, Santhana Gopala Krishnan R, Senga M, Shuaib F, Van Kerkhove MD, Vaz R, Wijekoon Kannangarage N, Yoti Z.

N Engl J Med. 2014 Oct 16;371(16):1481-95. doi: 10.1056/NEJMoa1411100. Epub 2014 Sep 22.


Badger responses to small-scale culling may compromise targeted control of bovine tuberculosis.

Bielby J, Donnelly CA, Pope LC, Burke T, Woodroffe R.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):9193-8. doi: 10.1073/pnas.1401503111. Epub 2014 Jun 9.


The emerging role of occupational therapy in primary care.

Donnelly CA, Brenchley CL, Crawford CN, Letts LJ.

Can J Occup Ther. 2014 Feb;81(1):51-61.


Distinguishing Between Reservoir Exposure and Human-to-Human Transmission for Emerging Pathogens Using Case Onset Data.

Kucharski A, Mills H, Pinsent A, Fraser C, Van Kerkhove M, Donnelly CA, Riley S.

PLoS Curr. 2014 Mar 7;6. pii: ecurrents.outbreaks.e1473d9bfc99d080ca242139a06c455f. doi: 10.1371/currents.outbreaks.e1473d9bfc99d080ca242139a06c455f.


Genetic control of Aedes aegypti: data-driven modelling to assess the effect of releasing different life stages and the potential for long-term suppression.

Winskill P, Harris AF, Morgan SA, Stevenson J, Raduan N, Alphey L, McKemey AR, Donnelly CA.

Parasit Vectors. 2014 Feb 13;7:68. doi: 10.1186/1756-3305-7-68.


A simple incidence-based method to avoid misinterpretation of bovine tuberculosis incidence trends in great britain.

Blake IM, Donnelly CA.

PLoS Curr. 2014 Jan 24;6. pii: ecurrents.outbreaks.6fd216fc24317f2ce04a7c5705a30c69. doi: 10.1371/currents.outbreaks.6fd216fc24317f2ce04a7c5705a30c69.


The Community Development Progress and Evaluation Tool: Assessing community development fieldwork.

Boudreau ML, Donnelly CA.

Can J Occup Ther. 2013 Oct;80(4):235-40.


A latent Markov modelling approach to the evaluation of circulating cathodic antigen strips for schistosomiasis diagnosis pre- and post-praziquantel treatment in Uganda.

Koukounari A, Donnelly CA, Moustaki I, Tukahebwa EM, Kabatereine NB, Wilson S, Webster JP, Deelder AM, Vennervald BJ, van Dam GJ.

PLoS Comput Biol. 2013;9(12):e1003402. doi: 10.1371/journal.pcbi.1003402. Epub 2013 Dec 19.


Bovine Tuberculosis Risk Factors for British Herds Before and After the 2001 Foot-and-Mouth Epidemic: What have we Learned from the TB99 and CCS2005 Studies?

Vial F, Miguel E, Johnston WT, Mitchell A, Donnelly CA.

Transbound Emerg Dis. 2015 Oct;62(5):505-15. doi: 10.1111/tbed.12184. Epub 2013 Dec 16. Review.


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