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Rabies virus-neutralising antibodies in healthy, unvaccinated individuals: What do they mean for rabies epidemiology?

Gold S, Donnelly CA, Nouvellet P, Woodroffe R.

PLoS Negl Trop Dis. 2020 Feb 13;14(2):e0007933. doi: 10.1371/journal.pntd.0007933. eCollection 2020 Feb. Review.


Spatiotemporal variability in case fatality ratios for 2013-2016 Ebola epidemic in West Africa.

Forna A, Dorigatti I, Nouvellet P, Donnelly CA.

Int J Infect Dis. 2020 Jan 28. pii: S1201-9712(20)30049-7. doi: 10.1016/j.ijid.2020.01.046. [Epub ahead of print]


Synaptic weighting in single flux quantum neuromorphic computing.

Schneider ML, Donnelly CA, Haygood IW, Wynn A, Russek SE, Castellanos-Beltran MA, Dresselhaus PD, Hopkins PF, Pufall MR, Rippard WH.

Sci Rep. 2020 Jan 22;10(1):934. doi: 10.1038/s41598-020-57892-0.


Risk of yellow fever virus importation into the United States from Brazil, outbreak years 2016-2017 and 2017-2018.

Dorigatti I, Morrison S, Donnelly CA, Garske T, Bowden S, Grills A.

Sci Rep. 2019 Dec 31;9(1):20420. doi: 10.1038/s41598-019-56521-9.


An assessment of risk compensation and spillover behavioural adaptions associated with the use of vaccines in animal disease management.

Enticott G, Maye D, Naylor R, Brunton L, Downs SH, Donnelly CA.

Vaccine. 2020 Jan 29;38(5):1065-1075. doi: 10.1016/j.vaccine.2019.11.037. Epub 2019 Dec 6.


Assessing effects from four years of industry-led badger culling in England on the incidence of bovine tuberculosis in cattle, 2013-2017.

Downs SH, Prosser A, Ashton A, Ashfield S, Brunton LA, Brouwer A, Upton P, Robertson A, Donnelly CA, Parry JE.

Sci Rep. 2019 Oct 11;9(1):14666. doi: 10.1038/s41598-019-49957-6.


Quantized Pulse Propagation in Josephson Junction Arrays.

Donnelly CA, Brevik JA, Flowers-Jacobs NE, Fox AE, Dresselhaus PD, Hopkins PF, Benz SP.

IEEE Trans Appl Supercond. 2019;30. doi: 10.1109/TASC.2019.2929481.


epiflows: an R package for risk assessment of travel-related spread of disease.

Moraga P, Dorigatti I, Kamvar ZN, Piatkowski P, Toikkanen SE, Nagraj VP, Donnelly CA, Jombart T.

Version 3. F1000Res. 2018 Aug 31 [revised 2019 Jan 1];7:1374. doi: 10.12688/f1000research.16032.3. eCollection 2018.


Mapping the baseline prevalence of lymphatic filariasis across Nigeria.

Eneanya OA, Fronterre C, Anagbogu I, Okoronkwo C, Garske T, Cano J, Donnelly CA.

Parasit Vectors. 2019 Sep 16;12(1):440. doi: 10.1186/s13071-019-3682-6.


Case fatality ratio estimates for the 2013 - 2016 West African Ebola epidemic: application of Boosted Regression Trees for imputation.

Forna A, Nouvellet P, Dorigatti I, Donnelly CA.

Clin Infect Dis. 2019 Jul 22. pii: ciz678. doi: 10.1093/cid/ciz678. [Epub ahead of print]


Design of vaccine efficacy trials during public health emergencies.

Dean NE, Gsell PS, Brookmeyer R, De Gruttola V, Donnelly CA, Halloran ME, Jasseh M, Nason M, Riveros X, Watson CH, Henao-Restrepo AM, Longini IM.

Sci Transl Med. 2019 Jul 3;11(499). pii: eaat0360. doi: 10.1126/scitranslmed.aat0360. Review.


Worldwide Reduction in MERS Cases and Deaths since 2016.

Donnelly CA, Malik MR, Elkholy A, Cauchemez S, Van Kerkhove MD.

Emerg Infect Dis. 2019 Sep;25(9):1758-1760. doi: 10.3201/eid2509.190143. Epub 2019 Sep 17.


The social, physical and economic impact of lymphedema and hydrocele: a matched cross-sectional study in rural Nigeria.

Eneanya OA, Garske T, Donnelly CA.

BMC Infect Dis. 2019 Apr 23;19(1):332. doi: 10.1186/s12879-019-3959-6.


Genetic and spatial characterization of the red fox (Vulpes vulpes) population in the area stretching between the Eastern and Dinaric Alps and its relationship with rabies and canine distemper dynamics.

Zecchin B, De Nardi M, Nouvellet P, Vernesi C, Babbucci M, Crestanello B, Bagó Z, Bedeković T, Hostnik P, Milani A, Donnelly CA, Bargelloni L, Lorenzetto M, Citterio C, Obber F, De Benedictis P, Cattoli G.

PLoS One. 2019 Mar 12;14(3):e0213515. doi: 10.1371/journal.pone.0213515. eCollection 2019.


Uncooked fish consumption among those at risk of Opisthorchis viverrini infection in central Thailand.

Suwannahitatorn P, Webster J, Riley S, Mungthin M, Donnelly CA.

PLoS One. 2019 Jan 31;14(1):e0211540. doi: 10.1371/journal.pone.0211540. eCollection 2019.


Potential inconsistencies in Zika surveillance data and our understanding of risk during pregnancy.

Hay JA, Nouvellet P, Donnelly CA, Riley S.

PLoS Negl Trop Dis. 2018 Dec 10;12(12):e0006991. doi: 10.1371/journal.pntd.0006991. eCollection 2018 Dec.


Environmental suitability for lymphatic filariasis in Nigeria.

Eneanya OA, Cano J, Dorigatti I, Anagbogu I, Okoronkwo C, Garske T, Donnelly CA.

Parasit Vectors. 2018 Sep 17;11(1):513. doi: 10.1186/s13071-018-3097-9.


Refined efficacy estimates of the Sanofi Pasteur dengue vaccine CYD-TDV using machine learning.

Dorigatti I, Donnelly CA, Laydon DJ, Small R, Jackson N, Coudeville L, Ferguson NM.

Nat Commun. 2018 Sep 7;9(1):3644. doi: 10.1038/s41467-018-06006-6.


Computational modelling for decision-making: where, why, what, who and how.

Calder M, Craig C, Culley D, de Cani R, Donnelly CA, Douglas R, Edmonds B, Gascoigne J, Gilbert N, Hargrove C, Hinds D, Lane DC, Mitchell D, Pavey G, Robertson D, Rosewell B, Sherwin S, Walport M, Wilson A.

R Soc Open Sci. 2018 Jun 20;5(6):172096. doi: 10.1098/rsos.172096. eCollection 2018 Jun. Review.


Four principles to make evidence synthesis more useful for policy.

Donnelly CA, Boyd I, Campbell P, Craig C, Vallance P, Walport M, Whitty CJM, Woods E, Wormald C.

Nature. 2018 Jun;558(7710):361-364. doi: 10.1038/d41586-018-05414-4. No abstract available.


Cluster-Randomized Test-Negative Design Trials: A Novel and Efficient Method to Assess the Efficacy of Community-Level Dengue Interventions.

Anders KL, Cutcher Z, Kleinschmidt I, Donnelly CA, Ferguson NM, Indriani C, Ryan PA, O'Neill SL, Jewell NP, Simmons CP.

Am J Epidemiol. 2018 Sep 1;187(9):2021-2028. doi: 10.1093/aje/kwy099.


Ultralow power artificial synapses using nanotextured magnetic Josephson junctions.

Schneider ML, Donnelly CA, Russek SE, Baek B, Pufall MR, Hopkins PF, Dresselhaus PD, Benz SP, Rippard WH.

Sci Adv. 2018 Jan 26;4(1):e1701329. doi: 10.1126/sciadv.1701329. eCollection 2018 Jan.


Interpreting ambiguous 'trace' results in Schistosoma mansoni CCA Tests: Estimating sensitivity and specificity of ambiguous results with no gold standard.

Clements MN, Donnelly CA, Fenwick A, Kabatereine NB, Knowles SCL, Meité A, N'Goran EK, Nalule Y, Nogaro S, Phillips AE, Tukahebwa EM, Fleming FM.

PLoS Negl Trop Dis. 2017 Dec 8;11(12):e0006102. doi: 10.1371/journal.pntd.0006102. eCollection 2017 Dec.


Assessing the effects of the first 2 years of industry-led badger culling in England on the incidence of bovine tuberculosis in cattle in 2013-2015.

Brunton LA, Donnelly CA, O'Connor H, Prosser A, Ashfield S, Ashton A, Upton P, Mitchell A, Goodchild AV, Parry JE, Downs SH.

Ecol Evol. 2017 Aug 4;7(18):7213-7230. doi: 10.1002/ece3.3254. eCollection 2017 Sep.


International risk of yellow fever spread from the ongoing outbreak in Brazil, December 2016 to May 2017.

Dorigatti I, Hamlet A, Aguas R, Cattarino L, Cori A, Donnelly CA, Garske T, Imai N, Ferguson NM.

Euro Surveill. 2017 Jul 13;22(28). pii: 30572. doi: 10.2807/1560-7917.ES.2017.22.28.30572.


Key data for outbreak evaluation: building on the Ebola experience.

Cori A, Donnelly CA, Dorigatti I, Ferguson NM, Fraser C, Garske T, Jombart T, Nedjati-Gilani G, Nouvellet P, Riley S, Van Kerkhove MD, Mills HL, Blake IM.

Philos Trans R Soc Lond B Biol Sci. 2017 May 26;372(1721). pii: 20160371. doi: 10.1098/rstb.2016.0371. Review.


Heterogeneities in the case fatality ratio in the West African Ebola outbreak 2013-2016.

Garske T, Cori A, Ariyarajah A, Blake IM, Dorigatti I, Eckmanns T, Fraser C, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Newton E, Nouvellet P, Perkins D, Riley S, Schumacher D, Shah A, Van Kerkhove MD, Dye C, Ferguson NM, Donnelly CA.

Philos Trans R Soc Lond B Biol Sci. 2017 May 26;372(1721). pii: 20160308. doi: 10.1098/rstb.2016.0308.


A simple approach to measure transmissibility and forecast incidence.

Nouvellet P, Cori A, Garske T, Blake IM, Dorigatti I, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Van Kerkhove MD, Fraser C, Donnelly CA, Ferguson NM, Riley S.

Epidemics. 2018 Mar;22:29-35. doi: 10.1016/j.epidem.2017.02.012. Epub 2017 Feb 24.


Early warning of footpad dermatitis and hockburn in broiler chicken flocks using optical flow, bodyweight and water consumption.

Dawkins MS, Roberts SJ, Cain RJ, Nickson T, Donnelly CA.

Vet Rec. 2017 May 20;180(20):499. doi: 10.1136/vr.104066. Epub 2017 Feb 27.


Assessing the interruption of the transmission of human helminths with mass drug administration alone: optimizing the design of cluster randomized trials.

Anderson R, Farrell S, Turner H, Walson J, Donnelly CA, Truscott J.

Parasit Vectors. 2017 Feb 17;10(1):93. doi: 10.1186/s13071-017-1979-x.


A Meta-Analysis of Serological Response Associated with Yellow Fever Vaccination.

Jean K, Donnelly CA, Ferguson NM, Garske T.

Am J Trop Med Hyg. 2016 Dec 7;95(6):1435-1439. doi: 10.4269/ajtmh.16-0401. Epub 2016 Oct 10.


Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study.

International Ebola Response Team, Agua-Agum J, Ariyarajah A, Aylward B, Bawo L, Bilivogui P, Blake IM, Brennan RJ, Cawthorne A, Cleary E, Clement P, Conteh R, Cori A, Dafae F, Dahl B, Dangou JM, Diallo B, Donnelly CA, Dorigatti I, Dye C, Eckmanns T, Fallah M, Ferguson NM, Fiebig L, Fraser C, Garske T, Gonzalez L, Hamblion E, Hamid N, Hersey S, Hinsley W, Jambei A, Jombart T, Kargbo D, Keita S, Kinzer M, George FK, Godefroy B, Gutierrez G, Kannangarage N, Mills HL, Moller T, Meijers S, Mohamed Y, Morgan O, Nedjati-Gilani G, Newton E, Nouvellet P, Nyenswah T, Perea W, Perkins D, Riley S, Rodier G, Rondy M, Sagrado M, Savulescu C, Schafer IJ, Schumacher D, Seyler T, Shah A, Van Kerkhove MD, Wesseh CS, Yoti Z.

PLoS Med. 2016 Nov 15;13(11):e1002170. doi: 10.1371/journal.pmed.1002170. eCollection 2016 Nov.


Localised Badger Culling Increases Risk of Herd Breakdown on Nearby, Not Focal, Land.

Bielby J, Vial F, Woodroffe R, Donnelly CA.

PLoS One. 2016 Oct 17;11(10):e0164618. doi: 10.1371/journal.pone.0164618. eCollection 2016.


Kovachy et al. reply.

Kovachy T, Asenbaum P, Overstreet C, Donnelly CA, Dickerson SM, Sugarbaker A, Hogan JM, Stamper-Kurn MA.

Nature. 2016 Sep 1;537(7618):E2-3. doi: 10.1038/nature19109. No abstract available.


After Ebola in West Africa--Unpredictable Risks, Preventable Epidemics.

WHO Ebola Response Team, Agua-Agum J, Allegranzi B, Ariyarajah A, Aylward R, Blake IM, Barboza P, Bausch D, Brennan RJ, Clement P, Coffey P, Cori A, Donnelly CA, Dorigatti I, Drury P, Durski K, Dye C, Eckmanns T, Ferguson NM, Fraser C, Garcia E, Garske T, Gasasira A, Gurry C, Hamblion E, Hinsley W, Holden R, Holmes D, Hugonnet S, Jaramillo Gutierrez G, Jombart T, Kelley E, Santhana R, Mahmoud N, Mills HL, Mohamed Y, Musa E, Naidoo D, Nedjati-Gilani G, Newton E, Norton I, Nouvellet P, Perkins D, Perkins M, Riley S, Schumacher D, Shah A, Tang M, Varsaneux O, Van Kerkhove MD.

N Engl J Med. 2016 Aug 11;375(6):587-96. doi: 10.1056/NEJMsr1513109. No abstract available.


Badgers prefer cattle pasture but avoid cattle: implications for bovine tuberculosis control.

Woodroffe R, Donnelly CA, Ham C, Jackson SY, Moyes K, Chapman K, Stratton NG, Cartwright SJ.

Ecol Lett. 2016 Oct;19(10):1201-8. doi: 10.1111/ele.12654. Epub 2016 Aug 4.


Unraveling the drivers of MERS-CoV transmission.

Cauchemez S, Nouvellet P, Cori A, Jombart T, Garske T, Clapham H, Moore S, Mills HL, Salje H, Collins C, Rodriquez-Barraquer I, Riley S, Truelove S, Algarni H, Alhakeem R, AlHarbi K, Turkistani A, Aguas RJ, Cummings DA, Van Kerkhove MD, Donnelly CA, Lessler J, Fraser C, Al-Barrak A, Ferguson NM.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9081-6. doi: 10.1073/pnas.1519235113. Epub 2016 Jul 25.


Contact transmission of influenza virus between ferrets imposes a looser bottleneck than respiratory droplet transmission allowing propagation of antiviral resistance.

Frise R, Bradley K, van Doremalen N, Galiano M, Elderfield RA, Stilwell P, Ashcroft JW, Fernandez-Alonso M, Miah S, Lackenby A, Roberts KL, Donnelly CA, Barclay WS.

Sci Rep. 2016 Jul 19;6:29793. doi: 10.1038/srep29793.


EPIDEMIOLOGY. Countering the Zika epidemic in Latin America.

Ferguson NM, Cucunubá ZM, Dorigatti I, Nedjati-Gilani GL, Donnelly CA, Basáñez MG, Nouvellet P, Lessler J.

Science. 2016 Jul 22;353(6297):353-4. doi: 10.1126/science.aag0219. Epub 2016 Jul 14. No abstract available.


How would a decision to leave the European Union affect medical research and health in the United Kingdom?

Majeed A, Hansell A, Saxena S, Millett C, Ward H, Harris M, Hayhoe B, Car J, Easton G, Donnelly CA, Perneczky R, Jarvelin MR, Ezzati M, Rawaf S, Vineis P, Ferguson N, Riboli E.

J R Soc Med. 2016 Jun;109(6):216-218. doi: 10.1177/0141076816652027. No abstract available.


Occupational therapy in primary care: Results from a national survey: L'ergothérapie dans les soins primaires : Résultats d'un sondage national.

Donnelly CA, Leclair LL, Wener PF, Hand CL, Letts LJ.

Can J Occup Ther. 2016 Jun;83(3):135-142. doi: 10.1177/0008417416637186.


Revealing the Micro-scale Signature of Endemic Zoonotic Disease Transmission in an African Urban Setting.

Bourhy H, Nakouné E, Hall M, Nouvellet P, Lepelletier A, Talbi C, Watier L, Holmes EC, Cauchemez S, Lemey P, Donnelly CA, Rambaut A.

PLoS Pathog. 2016 Apr 8;12(4):e1005525. doi: 10.1371/journal.ppat.1005525. eCollection 2016 Apr.


Faster Detection of Poliomyelitis Outbreaks to Support Polio Eradication.

Blake IM, Chenoweth P, Okayasu H, Donnelly CA, Aylward RB, Grassly NC.

Emerg Infect Dis. 2016 Mar;22(3):449-56. doi: 10.3201/eid2203.151394.


Ebola Virus Disease among Male and Female Persons in West Africa.

WHO Ebola Response Team, Agua-Agum J, Ariyarajah A, Blake IM, Cori A, Donnelly CA, Dorigatti I, Dye C, Eckmanns T, Ferguson NM, Fraser C, Garske T, Hinsley W, Jombart T, Mills HL, Nedjati-Gilani G, Newton E, Nouvellet P, Perkins D, Riley S, Schumacher D, Shah A, Thomas LJ, Van Kerkhove MD.

N Engl J Med. 2016 Jan 7;374(1):96-8. doi: 10.1056/NEJMc1510305. No abstract available.


Quantum superposition at the half-metre scale.

Kovachy T, Asenbaum P, Overstreet C, Donnelly CA, Dickerson SM, Sugarbaker A, Hogan JM, Kasevich MA.

Nature. 2015 Dec 24;528(7583):530-3. doi: 10.1038/nature16155.


The role of rapid diagnostics in managing Ebola epidemics.

Nouvellet P, Garske T, Mills HL, Nedjati-Gilani G, Hinsley W, Blake IM, Van Kerkhove MD, Cori A, Dorigatti I, Jombart T, Riley S, Fraser C, Donnelly CA, Ferguson NM.

Nature. 2015 Dec 3;528(7580):S109-16. doi: 10.1038/nature16041.


Dispersal of Engineered Male Aedes aegypti Mosquitoes.

Winskill P, Carvalho DO, Capurro ML, Alphey L, Donnelly CA, McKemey AR.

PLoS Negl Trop Dis. 2015 Nov 10;9(11):e0004156. doi: 10.1371/journal.pntd.0004156. eCollection 2015 Nov.


Bovine tuberculosis: Badger-cull targets unlikely to reduce TB.

Donnelly CA, Woodroffe R.

Nature. 2015 Oct 29;526(7575):640. doi: 10.1038/526640c. No abstract available.


Exploration of the power of routine surveillance data to assess the impacts of industry-led badger culling on bovine tuberculosis incidence in cattle herds.

Donnelly CA, Bento AI, Goodchild AV, Downs SH.

Vet Rec. 2015 Oct 24;177(16):417. doi: 10.1136/vr.103201. Epub 2015 Sep 15.


Potential Biases in Estimating Absolute and Relative Case-Fatality Risks during Outbreaks.

Lipsitch M, Donnelly CA, Fraser C, Blake IM, Cori A, Dorigatti I, Ferguson NM, Garske T, Mills HL, Riley S, Van Kerkhove MD, Hernán MA.

PLoS Negl Trop Dis. 2015 Jul 16;9(7):e0003846. doi: 10.1371/journal.pntd.0003846. eCollection 2015. Review.

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