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Items: 34

1.

A metagenomic strategy for harnessing the chemical repertoire of the human microbiome.

Sugimoto Y, Camacho FR, Wang S, Chankhamjon P, Odabas A, Biswas A, Jeffrey PD, Donia MS.

Science. 2019 Dec 13;366(6471). pii: eaax9176. doi: 10.1126/science.aax9176. Epub 2019 Oct 3.

PMID:
31582523
2.

A microbial factory for defensive kahalalides in a tripartite marine symbiosis.

Zan J, Li Z, Tianero MD, Davis J, Hill RT, Donia MS.

Science. 2019 Jun 14;364(6445). pii: eaaw6732. doi: 10.1126/science.aaw6732.

PMID:
31196985
3.

Potential of marine natural products against drug-resistant bacterial infections.

Liu M, El-Hossary EM, Oelschlaeger TA, Donia MS, Quinn RJ, Abdelmohsen UR.

Lancet Infect Dis. 2019 Jul;19(7):e237-e245. doi: 10.1016/S1473-3099(18)30711-4. Epub 2019 Apr 25. Review.

PMID:
31031171
4.

Localized production of defence chemicals by intracellular symbionts of Haliclona sponges.

Tianero MD, Balaich JN, Donia MS.

Nat Microbiol. 2019 Jul;4(7):1149-1159. doi: 10.1038/s41564-019-0415-8. Epub 2019 Apr 1.

PMID:
30936484
5.

Influence of Pickling Process on Allium cepa and Citrus limon Metabolome as Determined via Mass Spectrometry-Based Metabolomics.

Farag MA, Tawfike AF, Donia MS, Ehrlich A, Wessjohann LA.

Molecules. 2019 Mar 7;24(5). pii: E928. doi: 10.3390/molecules24050928.

6.

Detection of Natural Products and Their Producers in Ocean Sediments.

Tuttle RN, Demko AM, Patin NV, Kapono CA, Donia MS, Dorrestein P, Jensen PR.

Appl Environ Microbiol. 2019 Apr 4;85(8). pii: e02830-18. doi: 10.1128/AEM.02830-18. Print 2019 Apr 15.

7.

Lactobacillus reuteri induces gut intraepithelial CD4+CD8αα+ T cells.

Cervantes-Barragan L, Chai JN, Tianero MD, Di Luccia B, Ahern PP, Merriman J, Cortez VS, Caparon MG, Donia MS, Gilfillan S, Cella M, Gordon JI, Hsieh CS, Colonna M.

Science. 2017 Aug 25;357(6353):806-810. doi: 10.1126/science.aah5825. Epub 2017 Aug 3.

8.

Discovery of Reactive Microbiota-Derived Metabolites that Inhibit Host Proteases.

Guo CJ, Chang FY, Wyche TP, Backus KM, Acker TM, Funabashi M, Taketani M, Donia MS, Nayfach S, Pollard KS, Craik CS, Cravatt BF, Clardy J, Voigt CA, Fischbach MA.

Cell. 2017 Jan 26;168(3):517-526.e18. doi: 10.1016/j.cell.2016.12.021. Epub 2017 Jan 19.

9.

A Toolbox for Microbiome Engineering.

Donia MS.

Cell Syst. 2015 Jul 29;1(1):21-3. doi: 10.1016/j.cels.2015.07.003. Epub 2015 Jul 29.

10.

A Phase-Variable Surface Layer from the Gut Symbiont Bacteroides thetaiotaomicron.

Taketani M, Donia MS, Jacobson AN, Lambris JD, Fischbach MA.

mBio. 2015 Sep 29;6(5):e01339-15. doi: 10.1128/mBio.01339-15.

11.

Minimum Information about a Biosynthetic Gene cluster.

Medema MH, Kottmann R, Yilmaz P, Cummings M, Biggins JB, Blin K, de Bruijn I, Chooi YH, Claesen J, Coates RC, Cruz-Morales P, Duddela S, Düsterhus S, Edwards DJ, Fewer DP, Garg N, Geiger C, Gomez-Escribano JP, Greule A, Hadjithomas M, Haines AS, Helfrich EJ, Hillwig ML, Ishida K, Jones AC, Jones CS, Jungmann K, Kegler C, Kim HU, Kötter P, Krug D, Masschelein J, Melnik AV, Mantovani SM, Monroe EA, Moore M, Moss N, Nützmann HW, Pan G, Pati A, Petras D, Reen FJ, Rosconi F, Rui Z, Tian Z, Tobias NJ, Tsunematsu Y, Wiemann P, Wyckoff E, Yan X, Yim G, Yu F, Xie Y, Aigle B, Apel AK, Balibar CJ, Balskus EP, Barona-Gómez F, Bechthold A, Bode HB, Borriss R, Brady SF, Brakhage AA, Caffrey P, Cheng YQ, Clardy J, Cox RJ, De Mot R, Donadio S, Donia MS, van der Donk WA, Dorrestein PC, Doyle S, Driessen AJ, Ehling-Schulz M, Entian KD, Fischbach MA, Gerwick L, Gerwick WH, Gross H, Gust B, Hertweck C, Höfte M, Jensen SE, Ju J, Katz L, Kaysser L, Klassen JL, Keller NP, Kormanec J, Kuipers OP, Kuzuyama T, Kyrpides NC, Kwon HJ, Lautru S, Lavigne R, Lee CY, Linquan B, Liu X, Liu W, Luzhetskyy A, Mahmud T, Mast Y, Méndez C, Metsä-Ketelä M, Micklefield J, Mitchell DA, Moore BS, Moreira LM, Müller R, Neilan BA, Nett M, Nielsen J, O'Gara F, Oikawa H, Osbourn A, Osburne MS, Ostash B, Payne SM, Pernodet JL, Petricek M, Piel J, Ploux O, Raaijmakers JM, Salas JA, Schmitt EK, Scott B, Seipke RF, Shen B, Sherman DH, Sivonen K, Smanski MJ, Sosio M, Stegmann E, Süssmuth RD, Tahlan K, Thomas CM, Tang Y, Truman AW, Viaud M, Walton JD, Walsh CT, Weber T, van Wezel GP, Wilkinson B, Willey JM, Wohlleben W, Wright GD, Ziemert N, Zhang C, Zotchev SB, Breitling R, Takano E, Glöckner FO.

Nat Chem Biol. 2015 Sep;11(9):625-31. doi: 10.1038/nchembio.1890. No abstract available.

12.

Genome-Directed Lead Discovery: Biosynthesis, Structure Elucidation, and Biological Evaluation of Two Families of Polyene Macrolactams against Trypanosoma brucei.

Schulze CJ, Donia MS, Siqueira-Neto JL, Ray D, Raskatov JA, Green RE, McKerrow JH, Fischbach MA, Linington RG.

ACS Chem Biol. 2015 Oct 16;10(10):2373-81. doi: 10.1021/acschembio.5b00308. Epub 2015 Aug 13.

PMID:
26270237
13.

HUMAN MICROBIOTA. Small molecules from the human microbiota.

Donia MS, Fischbach MA.

Science. 2015 Jul 24;349(6246):1254766. doi: 10.1126/science.1254766. Epub 2015 Jul 23. Review.

14.

Discovery and characterization of gut microbiota decarboxylases that can produce the neurotransmitter tryptamine.

Williams BB, Van Benschoten AH, Cimermancic P, Donia MS, Zimmermann M, Taketani M, Ishihara A, Kashyap PC, Fraser JS, Fischbach MA.

Cell Host Microbe. 2014 Oct 8;16(4):495-503. doi: 10.1016/j.chom.2014.09.001. Epub 2014 Sep 25.

15.

A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics.

Donia MS, Cimermancic P, Schulze CJ, Wieland Brown LC, Martin J, Mitreva M, Clardy J, Linington RG, Fischbach MA.

Cell. 2014 Sep 11;158(6):1402-1414. doi: 10.1016/j.cell.2014.08.032.

16.

Host control of symbiont natural product chemistry in cryptic populations of the tunicate Lissoclinum patella.

Kwan JC, Tianero MD, Donia MS, Wyche TP, Bugni TS, Schmidt EW.

PLoS One. 2014 May 2;9(5):e95850. doi: 10.1371/journal.pone.0095850. eCollection 2014.

17.

A metabolomic view of how the human gut microbiota impacts the host metabolome using humanized and gnotobiotic mice.

Marcobal A, Kashyap PC, Nelson TA, Aronov PA, Donia MS, Spormann A, Fischbach MA, Sonnenburg JL.

ISME J. 2013 Oct;7(10):1933-43. doi: 10.1038/ismej.2013.89. Epub 2013 Jun 6.

18.

Dyeing to learn more about the gut microbiota.

Donia MS, Fischbach MA.

Cell Host Microbe. 2013 Feb 13;13(2):119-20. doi: 10.1016/j.chom.2013.01.011.

19.

Genome streamlining and chemical defense in a coral reef symbiosis.

Kwan JC, Donia MS, Han AW, Hirose E, Haygood MG, Schmidt EW.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20655-60. doi: 10.1073/pnas.1213820109. Epub 2012 Nov 26.

20.

Origin and variation of tunicate secondary metabolites.

Schmidt EW, Donia MS, McIntosh JA, Fricke WF, Ravel J.

J Nat Prod. 2012 Feb 24;75(2):295-304. doi: 10.1021/np200665k. Epub 2012 Jan 10. Review.

21.

Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis.

Donia MS, Fricke WF, Partensky F, Cox J, Elshahawi SI, White JR, Phillippy AM, Schatz MC, Piel J, Haygood MG, Ravel J, Schmidt EW.

Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):E1423-32. doi: 10.1073/pnas.1111712108. Epub 2011 Nov 28.

22.

Ribosomal route to small-molecule diversity.

Tianero MD, Donia MS, Young TS, Schultz PG, Schmidt EW.

J Am Chem Soc. 2012 Jan 11;134(1):418-25. doi: 10.1021/ja208278k. Epub 2011 Dec 22.

23.

Enzymatic basis of ribosomal peptide prenylation in cyanobacteria.

McIntosh JA, Donia MS, Nair SK, Schmidt EW.

J Am Chem Soc. 2011 Aug 31;133(34):13698-705. doi: 10.1021/ja205458h. Epub 2011 Aug 4.

24.

Accessing the hidden majority of marine natural products through metagenomics.

Donia MS, Ruffner DE, Cao S, Schmidt EW.

Chembiochem. 2011 May 16;12(8):1230-6. doi: 10.1002/cbic.201000780. Epub 2011 May 3.

25.

Linking chemistry and genetics in the growing cyanobactin natural products family.

Donia MS, Schmidt EW.

Chem Biol. 2011 Apr 22;18(4):508-19. doi: 10.1016/j.chembiol.2011.01.019.

26.

Variation in tropical reef symbiont metagenomes defined by secondary metabolism.

Donia MS, Fricke WF, Ravel J, Schmidt EW.

PLoS One. 2011 Mar 22;6(3):e17897. doi: 10.1371/journal.pone.0017897.

27.

Life in cellulose houses: symbiotic bacterial biosynthesis of ascidian drugs and drug leads.

Schmidt EW, Donia MS.

Curr Opin Biotechnol. 2010 Dec;21(6):827-33. doi: 10.1016/j.copbio.2010.10.006. Epub 2010 Nov 1. Review.

28.

Insights into heterocyclization from two highly similar enzymes.

McIntosh JA, Donia MS, Schmidt EW.

J Am Chem Soc. 2010 Mar 31;132(12):4089-91. doi: 10.1021/ja9107116.

29.

Ribosomal peptide natural products: bridging the ribosomal and nonribosomal worlds.

McIntosh JA, Donia MS, Schmidt EW.

Nat Prod Rep. 2009 Apr;26(4):537-59. Review.

30.

Chapter 23. Cyanobactin ribosomally synthesized peptides--a case of deep metagenome mining.

Schmidt EW, Donia MS.

Methods Enzymol. 2009;458:575-96. doi: 10.1016/S0076-6879(09)04823-X.

31.

Mollamides B and C, Cyclic hexapeptides from the indonesian tunicate Didemnum molle.

Donia MS, Wang B, Dunbar DC, Desai PV, Patny A, Avery M, Hamann MT.

J Nat Prod. 2008 Jun;71(6):941-5. doi: 10.1021/np700718p. Epub 2008 Jun 11.

32.

A global assembly line for cyanobactins.

Donia MS, Ravel J, Schmidt EW.

Nat Chem Biol. 2008 Jun;4(6):341-3. doi: 10.1038/nchembio.84. Epub 2008 Apr 20.

33.

Natural combinatorial peptide libraries in cyanobacterial symbionts of marine ascidians.

Donia MS, Hathaway BJ, Sudek S, Haygood MG, Rosovitz MJ, Ravel J, Schmidt EW.

Nat Chem Biol. 2006 Dec;2(12):729-35. Epub 2006 Nov 5.

PMID:
17086177
34.

Manzamine B and E and ircinal A related alkaloids from an Indonesian Acanthostrongylophora sponge and their activity against infectious, tropical parasitic, and Alzheimer's diseases.

Rao KV, Donia MS, Peng J, Garcia-Palomero E, Alonso D, Martinez A, Medina M, Franzblau SG, Tekwani BL, Khan SI, Wahyuono S, Willett KL, Hamann MT.

J Nat Prod. 2006 Jul;69(7):1034-40.

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