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Items: 10

1.

Looking beyond the hype: Applied AI and machine learning in translational medicine.

Toh TS, Dondelinger F, Wang D.

EBioMedicine. 2019 Sep;47:607-615. doi: 10.1016/j.ebiom.2019.08.027. Epub 2019 Aug 26. Review.

2.

Statistical Network Inference for Time-Varying Molecular Data with Dynamic Bayesian Networks.

Dondelinger F, Mukherjee S.

Methods Mol Biol. 2019;1883:25-48. doi: 10.1007/978-1-4939-8882-2_2. Review.

PMID:
30547395
3.

The joint lasso: high-dimensional regression for group structured data.

Dondelinger F, Mukherjee S; Alzheimer’s Disease Neuroimaging Initiative.

Biostatistics. 2020 Apr 1;21(2):219-235. doi: 10.1093/biostatistics/kxy035.

PMID:
30192903
4.

Cell cycle synchronisation of Trypanosoma brucei by centrifugal counter-flow elutriation reveals the timing of nuclear and kinetoplast DNA replication.

Benz C, Dondelinger F, McKean PG, Urbaniak MD.

Sci Rep. 2017 Dec 14;7(1):17599. doi: 10.1038/s41598-017-17779-z.

5.

Molecular heterogeneity at the network level: high-dimensional testing, clustering and a TCGA case study.

Städler N, Dondelinger F, Hill SM, Akbani R, Lu Y, Mills GB, Mukherjee S.

Bioinformatics. 2017 Sep 15;33(18):2890-2896. doi: 10.1093/bioinformatics/btx322.

6.

Corrigendum: A pan-cancer proteomic perspective on The Cancer Genome Atlas.

Akbani R, Ng PK, Werner HM, Shahmoradgoli M, Zhang F, Ju Z, Liu W, Yang JY, Yoshihara K, Li J, Ling S, Seviour EG, Ram PT, Minna JD, Diao L, Tong P, Heymach JV, Hill SM, Dondelinger F, Städler N, Byers LA, Meric-Bernstam F, Weinstein JN, Broom BM, Verhaak RG, Liang H, Mukherjee S, Lu Y, Mills GB.

Nat Commun. 2015 Jan 28;6:4852. doi: 10.1038/ncomms5852. No abstract available.

PMID:
25629879
7.

Causal network inference using biochemical kinetics.

Oates CJ, Dondelinger F, Bayani N, Korkola J, Gray JW, Mukherjee S.

Bioinformatics. 2014 Sep 1;30(17):i468-74. doi: 10.1093/bioinformatics/btu452.

8.

A pan-cancer proteomic perspective on The Cancer Genome Atlas.

Akbani R, Ng PK, Werner HM, Shahmoradgoli M, Zhang F, Ju Z, Liu W, Yang JY, Yoshihara K, Li J, Ling S, Seviour EG, Ram PT, Minna JD, Diao L, Tong P, Heymach JV, Hill SM, Dondelinger F, Städler N, Byers LA, Meric-Bernstam F, Weinstein JN, Broom BM, Verhaak RG, Liang H, Mukherjee S, Lu Y, Mills GB.

Nat Commun. 2014 May 29;5:3887. doi: 10.1038/ncomms4887. Erratum in: Nat Commun. 2015;6:4852.

9.

Nonhomogeneous dynamic Bayesian networks in systems biology.

Lèbre S, Dondelinger F, Husmeier D.

Methods Mol Biol. 2012;802:199-213. doi: 10.1007/978-1-61779-400-1_13.

PMID:
22130882
10.

Reverse engineering gene regulatory networks related to quorum sensing in the plant pathogen Pectobacterium atrosepticum.

Lin K, Husmeier D, Dondelinger F, Mayer CD, Liu H, Prichard L, Salmond GP, Toth IK, Birch PR.

Methods Mol Biol. 2010;673:253-81. doi: 10.1007/978-1-60761-842-3_17.

PMID:
20835805

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