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Items: 49

1.

In-depth genomic analyses identified novel letermovir resistance-associated substitutions in the cytomegalovirus UL56 and UL89 gene products.

Komatsu TE, Hodowanec AC, Colberg-Poley AM, Pikis A, Singer ME, O'Rear JJ, Donaldson EF.

Antiviral Res. 2019 Sep;169:104549. doi: 10.1016/j.antiviral.2019.104549. Epub 2019 Jul 4.

PMID:
31279814
2.

2018 Ebola virus disease outbreak in Équateur Province, Democratic Republic of the Congo: a retrospective genomic characterisation.

Mbala-Kingebeni P, Pratt CB, Wiley MR, Diagne MM, Makiala-Mandanda S, Aziza A, Di Paola N, Chitty JA, Diop M, Ayouba A, Vidal N, Faye O, Faye O, Karhemere S, Aruna A, Nsio J, Mulangu F, Mukadi D, Mukadi P, Kombe J, Mulumba A, Duraffour S, Likofata J, Pukuta E, Caviness K, Bartlett ML, Gonzalez J, Minogue T, Sozhamannan S, Gross SM, Schroth GP, Kuhn JH, Donaldson EF, Delaporte E, Sanchez-Lockhart M, Peeters M, Muyembe-Tamfum JJ, Alpha Sall A, Palacios G, Ahuka-Mundeke S.

Lancet Infect Dis. 2019 Jun;19(6):641-647. doi: 10.1016/S1473-3099(19)30124-0. Epub 2019 Apr 15.

PMID:
31000465
3.

Bat Caliciviruses and Human Noroviruses Are Antigenically Similar and Have Overlapping Histo-Blood Group Antigen Binding Profiles.

Kocher JF, Lindesmith LC, Debbink K, Beall A, Mallory ML, Yount BL, Graham RL, Huynh J, Gates JE, Donaldson EF, Baric RS.

MBio. 2018 May 22;9(3). pii: e00869-18. doi: 10.1128/mBio.00869-18.

4.

Conformational Occlusion of Blockade Antibody Epitopes, a Novel Mechanism of GII.4 Human Norovirus Immune Evasion.

Lindesmith LC, Mallory ML, Debbink K, Donaldson EF, Brewer-Jensen PD, Swann EW, Sheahan TP, Graham RL, Beltramello M, Corti D, Lanzavecchia A, Baric RS.

mSphere. 2018 Feb 7;3(1). pii: e00518-17. doi: 10.1128/mSphere.00518-17. eCollection 2018 Jan-Feb.

5.

Impact of hepatitis C virus polymorphisms on direct-acting antiviral treatment efficacy: Regulatory analyses and perspectives.

Harrington PR, Komatsu TE, Deming DJ, Donaldson EF, O'Rear JJ, Naeger LK.

Hepatology. 2018 Jun;67(6):2430-2448. doi: 10.1002/hep.29693.

PMID:
29194682
6.

Emergence of Novel Human Norovirus GII.17 Strains Correlates With Changes in Blockade Antibody Epitopes.

Lindesmith LC, Kocher JF, Donaldson EF, Debbink K, Mallory ML, Swann EW, Brewer-Jensen PD, Baric RS.

J Infect Dis. 2017 Dec 5;216(10):1227-1234. doi: 10.1093/infdis/jix385.

7.

Advancing the regulatory path on hepatitis B virus treatment and curative research: a stakeholders consultation.

Liu J, Goicochea P, Block T, Brosgart CL, Donaldson EF, Lenz O, Gee Lim S, Marins EG, Mishra P, Peters MG, Miller V.

J Virus Erad. 2017 Jan 1;3(1):1-6.

8.

Corrigendum: A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence.

Menachery VD, Yount BL Jr, Debbink K, Agnihothram S, Gralinski LE, Plante JA, Graham RL, Scobey T, Ge XY, Donaldson EF, Randell SH, Lanzavecchia A, Marasco WA, Shi ZL, Baric RS.

Nat Med. 2016 Apr;22(4):446. doi: 10.1038/nm0416-446d. No abstract available.

PMID:
27050591
9.

A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence.

Menachery VD, Yount BL Jr, Debbink K, Agnihothram S, Gralinski LE, Plante JA, Graham RL, Scobey T, Ge XY, Donaldson EF, Randell SH, Lanzavecchia A, Marasco WA, Shi ZL, Baric RS.

Nat Med. 2015 Dec;21(12):1508-13. doi: 10.1038/nm.3985. Epub 2015 Nov 9. Erratum in: Nat Med. 2016 Apr;22(4):446.

10.

Regulatory evaluation of antiviral drug resistance in the era of next-generation sequencing.

Donaldson EF, Deming DJ, O'Rear JJ, Naeger LK.

Biomark Med. 2015;9(11):1047-51. doi: 10.2217/bmm.15.63. Epub 2015 Oct 28. No abstract available.

11.

A simian hemorrhagic fever virus isolate from persistently infected baboons efficiently induces hemorrhagic fever disease in Japanese macaques.

Vatter HA, Donaldson EF, Huynh J, Rawlings S, Manoharan M, Legasse A, Planer S, Dickerson MF, Lewis AD, Colgin LM, Axthelm MK, Pecotte JK, Baric RS, Wong SW, Brinton MA.

Virology. 2015 Jan 1;474:186-98. doi: 10.1016/j.virol.2014.10.018. Epub 2014 Nov 19.

12.

Corrigendum to "Each of the eight simian hemorrhagic fever virus minor structural proteins is functionally important" [Virology 462-463 (2014) 351-362].

Vatter HA, Di H, Donaldson EF, Baric RS, Brinton MA.

Virology. 2014 Sep;464-465:461. doi: 10.1016/j.virol.2014.07.045. Epub 2014 Aug 10. No abstract available.

13.

Clinical evidence and bioinformatics characterization of potential hepatitis C virus resistance pathways for sofosbuvir.

Donaldson EF, Harrington PR, O'Rear JJ, Naeger LK.

Hepatology. 2015 Jan;61(1):56-65. doi: 10.1002/hep.27375. Epub 2014 Nov 20.

PMID:
25123381
14.

Each of the eight simian hemorrhagic fever virus minor structural proteins is functionally important.

Vatter HA, Di H, Donaldson EF, Baric RS, Brinton MA.

Virology. 2014 Aug;462-463:351-62. doi: 10.1016/j.virol.2014.06.001. Epub 2014 Jul 16. Erratum in: Virology. 2014 Sep;464-465:461.

15.

Standards for sequencing viral genomes in the era of high-throughput sequencing.

Ladner JT, Beitzel B, Chain PS, Davenport MG, Donaldson EF, Frieman M, Kugelman JR, Kuhn JH, O'Rear J, Sabeti PC, Wentworth DE, Wiley MR, Yu GY; Threat Characterization Consortium, Sozhamannan S, Bradburne C, Palacios G.

MBio. 2014 Jun 17;5(3):e01360-14. doi: 10.1128/mBio.01360-14.

16.

Functional analyses of the three simian hemorrhagic fever virus nonstructural protein 1 papain-like proteases.

Vatter HA, Di H, Donaldson EF, Radu GU, Maines TR, Brinton MA.

J Virol. 2014 Aug;88(16):9129-40. doi: 10.1128/JVI.01020-14. Epub 2014 Jun 4.

17.

Particle conformation regulates antibody access to a conserved GII.4 norovirus blockade epitope.

Lindesmith LC, Donaldson EF, Beltramello M, Pintus S, Corti D, Swanstrom J, Debbink K, Jones TA, Lanzavecchia A, Baric RS.

J Virol. 2014 Aug;88(16):8826-42. doi: 10.1128/JVI.01192-14. Epub 2014 May 28.

18.

Chimeric GII.4 norovirus virus-like-particle-based vaccines induce broadly blocking immune responses.

Debbink K, Lindesmith LC, Donaldson EF, Swanstrom J, Baric RS.

J Virol. 2014 Jul;88(13):7256-66. doi: 10.1128/JVI.00785-14. Epub 2014 Apr 16.

19.

A mouse model for Betacoronavirus subgroup 2c using a bat coronavirus strain HKU5 variant.

Agnihothram S, Yount BL Jr, Donaldson EF, Huynh J, Menachery VD, Gralinski LE, Graham RL, Becker MM, Tomar S, Scobey TD, Osswald HL, Whitmore A, Gopal R, Ghosh AK, Mesecar A, Zambon M, Heise M, Denison MR, Baric RS.

MBio. 2014 Mar 25;5(2):e00047-14. doi: 10.1128/mBio.00047-14.

20.

Evaluation of serologic and antigenic relationships between middle eastern respiratory syndrome coronavirus and other coronaviruses to develop vaccine platforms for the rapid response to emerging coronaviruses.

Agnihothram S, Gopal R, Yount BL Jr, Donaldson EF, Menachery VD, Graham RL, Scobey TD, Gralinski LE, Denison MR, Zambon M, Baric RS.

J Infect Dis. 2014 Apr 1;209(7):995-1006. doi: 10.1093/infdis/jit609. Epub 2013 Nov 18.

21.

A decade after SARS: strategies for controlling emerging coronaviruses.

Graham RL, Donaldson EF, Baric RS.

Nat Rev Microbiol. 2013 Dec;11(12):836-48. doi: 10.1038/nrmicro3143. Epub 2013 Nov 11. Review.

22.

Characterization of blockade antibody responses in GII.2.1976 Snow Mountain virus-infected subjects.

Swanstrom J, Lindesmith LC, Donaldson EF, Yount B, Baric RS.

J Virol. 2014 Jan;88(2):829-37. doi: 10.1128/JVI.02793-13. Epub 2013 Oct 30.

23.

Reverse genetics with a full-length infectious cDNA of the Middle East respiratory syndrome coronavirus.

Scobey T, Yount BL, Sims AC, Donaldson EF, Agnihothram SS, Menachery VD, Graham RL, Swanstrom J, Bove PF, Kim JD, Grego S, Randell SH, Baric RS.

Proc Natl Acad Sci U S A. 2013 Oct 1;110(40):16157-62. doi: 10.1073/pnas.1311542110. Epub 2013 Sep 16.

24.

Emergence of new pandemic GII.4 Sydney norovirus strain correlates with escape from herd immunity.

Debbink K, Lindesmith LC, Donaldson EF, Costantini V, Beltramello M, Corti D, Swanstrom J, Lanzavecchia A, Vinjé J, Baric RS.

J Infect Dis. 2013 Dec 1;208(11):1877-87. doi: 10.1093/infdis/jit370. Epub 2013 Aug 1.

25.

Emergence of a norovirus GII.4 strain correlates with changes in evolving blockade epitopes.

Lindesmith LC, Costantini V, Swanstrom J, Debbink K, Donaldson EF, Vinjé J, Baric RS.

J Virol. 2013 Mar;87(5):2803-13. doi: 10.1128/JVI.03106-12. Epub 2012 Dec 26.

26.

Norovirus immunity and the great escape.

Debbink K, Lindesmith LC, Donaldson EF, Baric RS.

PLoS Pathog. 2012;8(10):e1002921. doi: 10.1371/journal.ppat.1002921. Epub 2012 Oct 18. No abstract available.

27.

Evidence supporting a zoonotic origin of human coronavirus strain NL63.

Huynh J, Li S, Yount B, Smith A, Sturges L, Olsen JC, Nagel J, Johnson JB, Agnihothram S, Gates JE, Frieman MB, Baric RS, Donaldson EF.

J Virol. 2012 Dec;86(23):12816-25. doi: 10.1128/JVI.00906-12. Epub 2012 Sep 19.

28.

Increased antibody affinity confers broad in vitro protection against escape mutants of severe acute respiratory syndrome coronavirus.

Rani M, Bolles M, Donaldson EF, Van Blarcom T, Baric R, Iverson B, Georgiou G.

J Virol. 2012 Sep;86(17):9113-21. doi: 10.1128/JVI.00233-12. Epub 2012 Jun 13.

29.

Immunogenetic mechanisms driving norovirus GII.4 antigenic variation.

Lindesmith LC, Beltramello M, Donaldson EF, Corti D, Swanstrom J, Debbink K, Lanzavecchia A, Baric RS.

PLoS Pathog. 2012;8(5):e1002705. doi: 10.1371/journal.ppat.1002705. Epub 2012 May 17.

30.

Development and characterization of a reverse genetic system for studying dengue virus serotype 3 strain variation and neutralization.

Messer WB, Yount B, Hacker KE, Donaldson EF, Huynh JP, de Silva AM, Baric RS.

PLoS Negl Trop Dis. 2012;6(2):e1486. doi: 10.1371/journal.pntd.0001486. Epub 2012 Feb 28.

31.

Genetic mapping of a highly variable norovirus GII.4 blockade epitope: potential role in escape from human herd immunity.

Debbink K, Donaldson EF, Lindesmith LC, Baric RS.

J Virol. 2012 Jan;86(2):1214-26. doi: 10.1128/JVI.06189-11. Epub 2011 Nov 16.

32.

Monoclonal antibody-based antigenic mapping of norovirus GII.4-2002.

Lindesmith LC, Debbink K, Swanstrom J, Vinjé J, Costantini V, Baric RS, Donaldson EF.

J Virol. 2012 Jan;86(2):873-83. doi: 10.1128/JVI.06200-11. Epub 2011 Nov 16.

33.

Coronaviruses: an RNA proofreading machine regulates replication fidelity and diversity.

Denison MR, Graham RL, Donaldson EF, Eckerle LD, Baric RS.

RNA Biol. 2011 Mar-Apr;8(2):270-9. Epub 2011 Mar 1. Review.

34.

Norovirus GII.4 strain antigenic variation.

Lindesmith LC, Donaldson EF, Baric RS.

J Virol. 2011 Jan;85(1):231-42. doi: 10.1128/JVI.01364-10. Epub 2010 Oct 27.

35.

Metagenomic analysis of the viromes of three North American bat species: viral diversity among different bat species that share a common habitat.

Donaldson EF, Haskew AN, Gates JE, Huynh J, Moore CJ, Frieman MB.

J Virol. 2010 Dec;84(24):13004-18. doi: 10.1128/JVI.01255-10. Epub 2010 Oct 6.

36.

Natural strain variation and antibody neutralization of dengue serotype 3 viruses.

Wahala WM, Donaldson EF, de Alwis R, Accavitti-Loper MA, Baric RS, de Silva AM.

PLoS Pathog. 2010 Mar 19;6(3):e1000821. doi: 10.1371/journal.ppat.1000821.

37.

Viral shape-shifting: norovirus evasion of the human immune system.

Donaldson EF, Lindesmith LC, Lobue AD, Baric RS.

Nat Rev Microbiol. 2010 Mar;8(3):231-41. doi: 10.1038/nrmicro2296. Epub 2010 Feb 2. Review.

PMID:
20125087
38.

Herd immunity to GII.4 noroviruses is supported by outbreak patient sera.

Cannon JL, Lindesmith LC, Donaldson EF, Saxe L, Baric RS, Vinjé J.

J Virol. 2009 Jun;83(11):5363-74. doi: 10.1128/JVI.02518-08. Epub 2009 Mar 18.

39.

Severe acute respiratory syndrome coronavirus nsp9 dimerization is essential for efficient viral growth.

Miknis ZJ, Donaldson EF, Umland TC, Rimmer RA, Baric RS, Schultz LW.

J Virol. 2009 Apr;83(7):3007-18. doi: 10.1128/JVI.01505-08. Epub 2009 Jan 19.

40.

Systematic assembly and genetic manipulation of the mouse hepatitis virus A59 genome.

Donaldson EF, Sims AC, Baric RS.

Methods Mol Biol. 2008;454:293-315. doi: 10.1007/978-1-59745-181-9_21.

PMID:
19057869
41.

Synthetic recombinant bat SARS-like coronavirus is infectious in cultured cells and in mice.

Becker MM, Graham RL, Donaldson EF, Rockx B, Sims AC, Sheahan T, Pickles RJ, Corti D, Johnston RE, Baric RS, Denison MR.

Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19944-9. doi: 10.1073/pnas.0808116105. Epub 2008 Nov 26.

42.

Norovirus pathogenesis: mechanisms of persistence and immune evasion in human populations.

Donaldson EF, Lindesmith LC, Lobue AD, Baric RS.

Immunol Rev. 2008 Oct;225:190-211. doi: 10.1111/j.1600-065X.2008.00680.x. Review.

PMID:
18837783
43.

Systematic assembly of a full-length infectious clone of human coronavirus NL63.

Donaldson EF, Yount B, Sims AC, Burkett S, Pickles RJ, Baric RS.

J Virol. 2008 Dec;82(23):11948-57. doi: 10.1128/JVI.01804-08. Epub 2008 Sep 25.

44.

A novel mutation in murine hepatitis virus nsp5, the viral 3C-like proteinase, causes temperature-sensitive defects in viral growth and protein processing.

Sparks JS, Donaldson EF, Lu X, Baric RS, Denison MR.

J Virol. 2008 Jun;82(12):5999-6008. doi: 10.1128/JVI.00203-08. Epub 2008 Apr 2.

45.

Mechanisms of GII.4 norovirus persistence in human populations.

Lindesmith LC, Donaldson EF, Lobue AD, Cannon JL, Zheng DP, Vinje J, Baric RS.

PLoS Med. 2008 Feb;5(2):e31. doi: 10.1371/journal.pmed.0050031.

46.

Analysis of murine hepatitis virus strain A59 temperature-sensitive mutant TS-LA6 suggests that nsp10 plays a critical role in polyprotein processing.

Donaldson EF, Graham RL, Sims AC, Denison MR, Baric RS.

J Virol. 2007 Jul;81(13):7086-98. Epub 2007 Apr 11.

47.

Murine hepatitis virus replicase protein nsp10 is a critical regulator of viral RNA synthesis.

Donaldson EF, Sims AC, Graham RL, Denison MR, Baric RS.

J Virol. 2007 Jun;81(12):6356-68. Epub 2007 Mar 28.

48.

Mutational analysis of MHV-A59 replicase protein-nsp10.

Donaldson EF, Sims AC, Deming DJ, Baric RS.

Adv Exp Med Biol. 2006;581:61-6. No abstract available.

PMID:
17037505
49.

Automated characterization of potentially active retroid agents in the human genome.

McClure MA, Richardson HS, Clinton RA, Hepp CM, Crowther BA, Donaldson EF.

Genomics. 2005 Apr;85(4):512-23.

PMID:
15780754

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