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Items: 23


Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis.

Domanska D, Kanduri C, Simovski B, Sandve GK.

BMC Bioinformatics. 2018 Dec 14;19(1):481. doi: 10.1186/s12859-018-2438-1.


Coloc-stats: a unified web interface to perform colocalization analysis of genomic features.

Simovski B, Kanduri C, Gundersen S, Titov D, Domanska D, Bock C, Bossini-Castillo L, Chikina M, Favorov A, Layer RM, Mironov AA, Quinlan AR, Sheffield NC, Trynka G, Sandve GK.

Nucleic Acids Res. 2018 Jul 2;46(W1):W186-W193. doi: 10.1093/nar/gky474.


Complex patterns of concomitant medication use: A study among Norwegian women using paracetamol during pregnancy.

Salvatore S, Domanska D, Wood M, Nordeng H, Sandve GK.

PLoS One. 2017 Dec 28;12(12):e0190101. doi: 10.1371/journal.pone.0190101. eCollection 2017.


Genome build information is an essential part of genomic track files.

Kanduri C, Domanska D, Hovig E, Sandve GK.

Genome Biol. 2017 Sep 14;18(1):175. doi: 10.1186/s13059-017-1312-1.


Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1.

Alsøe L, Sarno A, Carracedo S, Domanska D, Dingler F, Lirussi L, SenGupta T, Tekin NB, Jobert L, Alexandrov LB, Galashevskaya A, Rada C, Sandve GK, Rognes T, Krokan HE, Nilsen H.

Sci Rep. 2017 Aug 3;7(1):7199. doi: 10.1038/s41598-017-07314-5.


The rainfall plot: its motivation, characteristics and pitfalls.

Domanska D, Vodák D, Lund-Andersen C, Salvatore S, Hovig E, Sandve GK.

BMC Bioinformatics. 2017 May 18;18(1):264. doi: 10.1186/s12859-017-1679-8.


GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome.

Simovski B, Vodák D, Gundersen S, Domanska D, Azab A, Holden L, Holden M, Grytten I, Rand K, Drabløs F, Johansen M, Mora A, Lund-Andersen C, Fromm B, Eskeland R, Gabrielsen OS, Ferkingstad E, Nakken S, Bengtsen M, Nederbragt AJ, Thorarensen HS, Akse JA, Glad I, Hovig E, Sandve GK.

Gigascience. 2017 Jul 1;6(7):1-12. doi: 10.1093/gigascience/gix032.


FHIT promoter methylation status, low protein and high mRNA levels in patients with non-small cell lung cancer.

Czarnecka KH, Migdalska-Sęk M, Domańska D, Pastuszak-Lewandoska D, Dutkowska A, Kordiak J, Nawrot E, Kiszałkiewicz J, Antczak A, Brzeziańska-Lasota E.

Int J Oncol. 2016 Sep;49(3):1175-84. doi: 10.3892/ijo.2016.3610. Epub 2016 Jul 6.


Single nucleotide polymorphisms in the STAT3 gene influence AITD susceptibility, thyroid autoantibody levels, and IL6 and IL17 secretion.

Kotkowska A, Sewerynek E, Domańska D, Pastuszak-Lewandoska D, Brzeziańska E.

Cell Mol Biol Lett. 2015 Mar;20(1):88-101. doi: 10.1515/cmble-2015-0004.


Quantitative analysis of mRNA expression levels and DNA methylation profiles of three neighboring genes: FUS1, NPRL2/G21 and RASSF1A in non-small cell lung cancer patients.

Pastuszak-Lewandoska D, Kordiak J, Migdalska-Sęk M, Czarnecka KH, Antczak A, Górski P, Nawrot E, Kiszałkiewicz JM, Domańska D, Brzeziańska-Lasota E.

Respir Res. 2015 Jun 26;16:76. doi: 10.1186/s12931-015-0230-6.


Expression of HIF-1A/VEGF/ING-4 Axis in Pulmonary Sarcoidosis.

Piotrowski WJ, Kiszałkiewicz J, Pastuszak-Lewandoska D, Górski P, Antczak A, Migdalska-Sęk M, Górski W, Czarnecka KH, Domańska D, Nawrot E, Brzeziańska-Lasota E.

Adv Exp Med Biol. 2015;866:61-9. doi: 10.1007/5584_2015_144.


Decreased FAM107A Expression in Patients with Non-small Cell Lung Cancer.

Pastuszak-Lewandoska D, Czarnecka KH, Migdalska-Sęk M, Nawrot E, Domańska D, Kiszałkiewicz J, Kordiak J, Antczak A, Górski P, Brzeziańska-Lasota E.

Adv Exp Med Biol. 2015;852:39-48. doi: 10.1007/5584_2014_109.


TGF-β and SMADs mRNA Expression in Pulmonary Sarcoidosis.

Piotrowski WJ, Kiszałkiewicz J, Pastuszak-Lewandoska D, Antczak A, Górski P, Migdalska-Sęk M, Górski W, Czarnecka K, Nawrot E, Domańska D, Brzeziańska-Lasota E.

Adv Exp Med Biol. 2015;852:59-69. doi: 10.1007/5584_2014_106.


Gene doping in sport - perspectives and risks.

Brzeziańska E, Domańska D, Jegier A.

Biol Sport. 2014 Dec;31(4):251-9. doi: 10.5604/20831862.1120931. Epub 2014 Sep 12.


Expression of STAT5, COX-2 and PIAS3 in correlation with NSCLC histhopathological features.

Pastuszak-Lewandoska D, Domańska D, Czarnecka KH, Kordiak J, Migdalska-Sęk M, Nawrot E, Kiszałkiewicz J, Antczak A, Górski P, Brzeziańska E.

PLoS One. 2014 Aug 19;9(8):e104265. doi: 10.1371/journal.pone.0104265. eCollection 2014.


HPV16 E6*II gene expression in intraepithelial cervical lesions as an indicator of neoplastic grade: a pilot study.

Pastuszak-Lewandoska D, Bartosińska-Dyc A, Migdalska-Sęk M, Czarnecka KH, Nawrot E, Domańska D, Szyłło K, Brzeziańska E.

Med Oncol. 2014 Mar;31(3):842. doi: 10.1007/s12032-014-0842-6. Epub 2014 Jan 17.


STAT3 rs3816769 polymorphism correlates with gene expression level and may predispose to nonsmall cell lung cancer: a preliminary study.

Domańska D, Antczak A, Pastuszak-Lewandoska D, Górski P, Kordiak J, Czarnecka K, Migdalska-Sęk M, Nawrot E, Kiszałkiewcz J, Brzeziańska E.

Pol Arch Med Wewn. 2013;123(12):672-9. Erratum in: Pol Arch Med Wewn. 2014;124(4):217.


CTLA-4 polymorphisms (+49 A/G and -318 C/T) are important genetic determinants of AITD susceptibility and predisposition to high levels of thyroid autoantibodies in Polish children - preliminary study.

Pastuszak-Lewandoska D, Domańska D, Rudzińska M, Bossowski A, Kucharska A, Sewerynek E, Czarnecka K, Migdalska-Sęk M, Czarnocka B.

Acta Biochim Pol. 2013;60(4):641-6. Epub 2013 Dec 20.


Allelic imbalance in 1p, 7q, 9p, 11p, 12q and 16q regions in non-small cell lung carcinoma and its clinical association: a pilot study.

Czarnecka KH, Migdalska-Sęk M, Antczak A, Pastuszak-Lewandoska D, Kordiak J, Nawrot E, Domańska D, Kaleta D, Górski P, Brzeziańska EB.

Mol Biol Rep. 2013 Dec;40(12):6671-84. doi: 10.1007/s11033-013-2782-1. Epub 2013 Oct 4.


Ctla-4 expression and polymorphisms in lung tissue of patients with diagnosed non-small-cell lung cancer.

Antczak A, Pastuszak-Lewandoska D, Górski P, Domańska D, Migdalska-Sęk M, Czarnecka K, Nawrot E, Kordiak J, Brzeziańska E.

Biomed Res Int. 2013;2013:576486. doi: 10.1155/2013/576486. Epub 2013 Jul 9.


Significant frequency of allelic imbalance in 3p region covering RARβ and MLH1 loci seems to be essential in molecular non-small cell lung cancer diagnosis.

Antczak A, Migdalska-Sęk M, Pastuszak-Lewandoska D, Czarnecka K, Nawrot E, Domańska D, Kordiak J, Górski P, Brzeziańska E.

Med Oncol. 2013 Jun;30(2):532. doi: 10.1007/s12032-013-0532-9. Epub 2013 Mar 17.


Diagnostic value of DNA alteration: loss of heterozygosity or allelic imbalance-promising for molecular staging of prostate cancers.

Bryś M, Migdalska-Sęk M, Pastuszak-Lewandoska D, Forma E, Czarnecka K, Domańska D, Nawrot E, Wilkosz J, Różański W, Brzeziańska E.

Med Oncol. 2013 Mar;30(1):391. doi: 10.1007/s12032-012-0391-9. Epub 2013 Jan 4.


CTLA-4 gene polymorphisms and their influence on predisposition to autoimmune thyroid diseases (Graves' disease and Hashimoto's thyroiditis).

Pastuszak-Lewandoska D, Sewerynek E, Domańska D, Gładyś A, Skrzypczak R, Brzeziańska E.

Arch Med Sci. 2012 Jul 4;8(3):415-21. doi: 10.5114/aoms.2012.28593.

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