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Items: 43

1.

Global distribution of Trebouxiophyceae diversity explored by high-throughput sequencing and phylogenetic approaches.

Metz S, Singer D, Domaizon I, Unrein F, Lara E.

Environ Microbiol. 2019 Oct;21(10):3885-3895. doi: 10.1111/1462-2920.14738. Epub 2019 Jul 29.

PMID:
31299138
2.

Diversity, spatial distribution and activity of fungi in freshwater ecosystems.

Lepère C, Domaizon I, Humbert JF, Jardillier L, Hugoni M, Debroas D.

PeerJ. 2019 Feb 21;7:e6247. doi: 10.7717/peerj.6247. eCollection 2019.

3.

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems.

Pawlowski J, Kelly-Quinn M, Altermatt F, Apothéloz-Perret-Gentil L, Beja P, Boggero A, Borja A, Bouchez A, Cordier T, Domaizon I, Feio MJ, Filipe AF, Fornaroli R, Graf W, Herder J, van der Hoorn B, Iwan Jones J, Sagova-Mareckova M, Moritz C, Barquín J, Piggott JJ, Pinna M, Rimet F, Rinkevich B, Sousa-Santos C, Specchia V, Trobajo R, Vasselon V, Vitecek S, Zimmerman J, Weigand A, Leese F, Kahlert M.

Sci Total Environ. 2018 Oct 1;637-638:1295-1310. doi: 10.1016/j.scitotenv.2018.05.002. Epub 2018 May 22. Review.

4.

Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program.

Lefrançois E, Apothéloz-Perret-Gentil L, Blancher P, Botreau S, Chardon C, Crepin L, Cordier T, Cordonier A, Domaizon I, Ferrari BJD, Guéguen J, Hustache JC, Jacas L, Jacquet S, Lacroix S, Mazenq AL, Pawlowska A, Perney P, Pawlowski J, Rimet F, Rubin JF, Trevisan D, Vivien R, Bouchez A.

Environ Sci Pollut Res Int. 2018 Dec;25(34):33858-33866. doi: 10.1007/s11356-018-2172-2. Epub 2018 May 7.

PMID:
29732510
5.

Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication.

Monchamp ME, Spaak P, Domaizon I, Dubois N, Bouffard D, Pomati F.

Nat Ecol Evol. 2018 Feb;2(2):317-324. doi: 10.1038/s41559-017-0407-0. Epub 2017 Dec 11.

PMID:
29230026
6.

Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming.

Capo E, Debroas D, Arnaud F, Perga ME, Chardon C, Domaizon I.

Environ Microbiol. 2017 Jul;19(7):2873-2892. doi: 10.1111/1462-2920.13815. Epub 2017 Jun 22.

PMID:
28585365
7.

Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data.

Debroas D, Domaizon I, Humbert JF, Jardillier L, Lepère C, Oudart A, Taïb N.

FEMS Microbiol Ecol. 2017 Apr 1;93(4). doi: 10.1093/femsec/fix023.

PMID:
28334157
8.

Long-term dynamics in microbial eukaryotes communities: a palaeolimnological view based on sedimentary DNA.

Capo E, Debroas D, Arnaud F, Guillemot T, Bichet V, Millet L, Gauthier E, Massa C, Develle AL, Pignol C, Lejzerowicz F, Domaizon I.

Mol Ecol. 2016 Dec;25(23):5925-5943. doi: 10.1111/mec.13893. Epub 2016 Nov 10.

PMID:
27761959
9.

Trophic relationships between metazooplankton communities and their plankton food sources in the Iles Eparses (Western Indian Ocean).

Dupuy C, Pagano M, Got P, Domaizon I, Chappuis A, Marchessaux G, Bouvy M.

Mar Environ Res. 2016 May;116:18-31. doi: 10.1016/j.marenvres.2016.02.011. Epub 2016 Feb 27.

PMID:
26970685
10.

Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France).

Lepère C, Domaizon I, Hugoni M, Vellet A, Debroas D.

Front Microbiol. 2016 Feb 10;7:130. doi: 10.3389/fmicb.2016.00130. eCollection 2016.

11.

Local human pressures influence gene flow in a hybridizing Daphnia species complex.

Alric B, Möst M, Domaizon I, Pignol C, Spaak P, Perga ME.

J Evol Biol. 2016 Apr;29(4):720-35. doi: 10.1111/jeb.12820. Epub 2016 Jan 22.

12.

Is Planktonic Diversity Well Recorded in Sedimentary DNA? Toward the Reconstruction of Past Protistan Diversity.

Capo E, Debroas D, Arnaud F, Domaizon I.

Microb Ecol. 2015 Nov;70(4):865-75. doi: 10.1007/s00248-015-0627-2. Epub 2015 May 29.

PMID:
26022714
13.

Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea.

Hugoni M, Agogué H, Taib N, Domaizon I, Moné A, Galand PE, Bronner G, Debroas D, Mary I.

Microb Ecol. 2015 Aug;70(2):473-83. doi: 10.1007/s00248-015-0601-z. Epub 2015 Apr 8.

PMID:
25851445
14.

Acceleration of cyanobacterial dominance in north temperate-subarctic lakes during the Anthropocene.

Taranu ZE, Gregory-Eaves I, Leavitt PR, Bunting L, Buchaca T, Catalan J, Domaizon I, Guilizzoni P, Lami A, McGowan S, Moorhouse H, Morabito G, Pick FR, Stevenson MA, Thompson PL, Vinebrooke RD.

Ecol Lett. 2015 Apr;18(4):375-84. doi: 10.1111/ele.12420. Epub 2015 Feb 26.

PMID:
25728551
15.

Evidence for an active rare biosphere within freshwater protists community.

Debroas D, Hugoni M, Domaizon I.

Mol Ecol. 2015 Mar;24(6):1236-47. doi: 10.1111/mec.13116.

PMID:
25690883
16.

Temporal dynamics of active Archaea in oxygen-depleted zones of two deep lakes.

Hugoni M, Domaizon I, Taib N, Biderre-Petit C, Agogué H, Galand PE, Debroas D, Mary I.

Environ Microbiol Rep. 2015 Apr;7(2):321-9. doi: 10.1111/1758-2229.12251. Epub 2015 Jan 23.

PMID:
25472601
17.

When is sampling complete? The effects of geographical range and marker choice on perceived diversity in Nitzschia palea (Bacillariophyta).

Rimet F, Trobajo R, Mann DG, Kermarrec L, Franc A, Domaizon I, Bouchez A.

Protist. 2014 May;165(3):245-59. doi: 10.1016/j.protis.2014.03.005. Epub 2014 Mar 22.

PMID:
24739436
18.

Long livestock farming history and human landscape shaping revealed by lake sediment DNA.

Giguet-Covex C, Pansu J, Arnaud F, Rey PJ, Griggo C, Gielly L, Domaizon I, Coissac E, David F, Choler P, Poulenard J, Taberlet P.

Nat Commun. 2014;5:3211. doi: 10.1038/ncomms4211.

PMID:
24487920
19.

The need for ecological monitoring of freshwaters in a changing world: a case study of Lakes Annecy, Bourget, and Geneva.

Jacquet S, Domaizon I, Anneville O.

Environ Monit Assess. 2014 Jun;186(6):3455-76. doi: 10.1007/s10661-014-3630-z. Epub 2014 Jan 23.

PMID:
24452859
20.

Trophic transfer of microcystins through the lake pelagic food web: evidence for the role of zooplankton as a vector in fish contamination.

Sotton B, Guillard J, Anneville O, Maréchal M, Savichtcheva O, Domaizon I.

Sci Total Environ. 2014 Jan 1;466-467:152-63. doi: 10.1016/j.scitotenv.2013.07.020. Epub 2013 Jul 30.

PMID:
23906853
21.

Structure of the rare archaeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters.

Hugoni M, Taib N, Debroas D, Domaizon I, Jouan Dufournel I, Bronner G, Salter I, Agogué H, Mary I, Galand PE.

Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):6004-9. doi: 10.1073/pnas.1216863110. Epub 2013 Mar 27.

22.

Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity.

Taib N, Mangot JF, Domaizon I, Bronner G, Debroas D.

PLoS One. 2013;8(3):e58950. doi: 10.1371/journal.pone.0058950. Epub 2013 Mar 14.

23.

Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems.

Lepère C, Domaizon I, Taïb N, Mangot JF, Bronner G, Boucher D, Debroas D.

FEMS Microbiol Ecol. 2013 Jul;85(1):85-94. doi: 10.1111/1574-6941.12100. Epub 2013 Mar 18.

24.

Dynamics of ammonia-oxidizing Archaea and Bacteria in contrasted freshwater ecosystems.

Hugoni M, Etien S, Bourges A, Lepère C, Domaizon I, Mallet C, Bronner G, Debroas D, Mary I.

Res Microbiol. 2013 May;164(4):360-70. doi: 10.1016/j.resmic.2013.01.004. Epub 2013 Feb 8.

PMID:
23395876
25.

Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes.

Mangot JF, Domaizon I, Taib N, Marouni N, Duffaud E, Bronner G, Debroas D.

Environ Microbiol. 2013 Jun;15(6):1745-58. doi: 10.1111/1462-2920.12065. Epub 2013 Jan 9.

PMID:
23297806
26.

Impact of toxic cyanobacterial blooms on Eurasian perch (Perca fluviatilis): experimental study and in situ observations in a peri-alpine lake.

Sotton B, Guillard J, Bony S, Devaux A, Domaizon I, Givaudan N, Crespeau F, Huet H, Anneville O.

PLoS One. 2012;7(12):e52243. doi: 10.1371/journal.pone.0052243. Epub 2012 Dec 18.

27.

Are cyanobacterial blooms trophic dead ends?

Perga ME, Domaizon I, Guillard J, Hamelet V, Anneville O.

Oecologia. 2013 Jun;172(2):551-62. doi: 10.1007/s00442-012-2519-1. Epub 2012 Nov 6.

PMID:
23129401
28.

Short-term responses of unicellular planktonic eukaryotes to increases in temperature and UVB radiation.

Domaizon I, Lepère C, Debroas D, Bouvy M, Ghiglione JF, Jacquet S, Bettarel Y, Bouvier C, Torréton JP, Vidussi F, Mostajir B, Kirkham A, Lefloc'h E, Fouilland E, Montanié H, Bouvier T.

BMC Microbiol. 2012 Sep 11;12:202. doi: 10.1186/1471-2180-12-202.

29.

Short-term uptake of microcystin-LR by Coregonus lavaretus: GST activity and genotoxicity.

Sotton B, Devaux A, Givaudan N, Guillard J, Domaizon I, Bony S, Anneville O.

Ecotoxicology. 2012 Oct;21(7):1788-96. doi: 10.1007/s10646-012-0913-4. Epub 2012 Apr 27.

PMID:
22539116
30.

Quantitative PCR enumeration of total/toxic Planktothrix rubescens and total cyanobacteria in preserved DNA isolated from lake sediments.

Savichtcheva O, Debroas D, Kurmayer R, Villar C, Jenny JP, Arnaud F, Perga ME, Domaizon I.

Appl Environ Microbiol. 2011 Dec;77(24):8744-53. doi: 10.1128/AEM.06106-11. Epub 2011 Oct 7.

31.

Trophic interactions between viruses, bacteria and nanoflagellates under various nutrient conditions and simulated climate change.

Bouvy M, Bettarel Y, Bouvier C, Domaizon I, Jacquet S, Le Floc'h E, Montanié H, Mostajir B, Sime-Ngando T, Torréton JP, Vidussi F, Bouvier T.

Environ Microbiol. 2011 Jul;13(7):1842-57. doi: 10.1111/j.1462-2920.2011.02498.x. Epub 2011 May 23.

PMID:
21605305
32.

Diversity and dynamics of free-living and particle-associated Betaproteobacteria and Actinobacteria in relation to phytoplankton and zooplankton communities.

Parveen B, Reveilliez JP, Mary I, Ravet V, Bronner G, Mangot JF, Domaizon I, Debroas D.

FEMS Microbiol Ecol. 2011 Sep;77(3):461-76. doi: 10.1111/j.1574-6941.2011.01130.x. Epub 2011 Jun 16.

33.

Effect of grazers and viruses on bacterial community structure and production in two contrasting trophic lakes.

Berdjeb L, Pollet T, Domaizon I, Jacquet S.

BMC Microbiol. 2011 Apr 29;11:88. doi: 10.1186/1471-2180-11-88.

34.

Ecological traits of planktonic viruses and prokaryotes along a full-salinity gradient.

Bettarel Y, Bouvier T, Bouvier C, Carré C, Desnues A, Domaizon I, Jacquet S, Robin A, Sime-Ngando T.

FEMS Microbiol Ecol. 2011 May;76(2):360-72. doi: 10.1111/j.1574-6941.2011.01054.x. Epub 2011 Feb 14.

35.

A 2-year assessment of the main environmental factors driving the free-living bacterial community structure in Lake Bourget (France).

Berdjeb L, Ghiglione JF, Domaizon I, Jacquet S.

Microb Ecol. 2011 May;61(4):941-54. doi: 10.1007/s00248-010-9767-6. Epub 2010 Nov 17.

PMID:
21082178
36.

Vertical structure of small eukaryotes in three lakes that differ by their trophic status: a quantitative approach.

Lepère C, Masquelier S, Mangot JF, Debroas D, Domaizon I.

ISME J. 2010 Dec;4(12):1509-19. doi: 10.1038/ismej.2010.83. Epub 2010 Jun 24.

PMID:
20574460
37.

Community structure and dynamics of small eukaryotes targeted by new oligonucleotide probes: new insight into the lacustrine microbial food web.

Mangot JF, Lepère C, Bouvier C, Debroas D, Domaizon I.

Appl Environ Microbiol. 2009 Oct;75(19):6373-81. doi: 10.1128/AEM.00607-09. Epub 2009 Aug 7.

38.

Unexpected importance of potential parasites in the composition of the freshwater small-eukaryote community.

Lepère C, Domaizon I, Debroas D.

Appl Environ Microbiol. 2008 May;74(10):2940-9. doi: 10.1128/AEM.01156-07. Epub 2008 Mar 21.

39.

Community composition of lacustrine small eukaryotes in hyper-eutrophic conditions in relation to top-down and bottom-up factors.

Lepère C, Domaizon I, Debroas D.

FEMS Microbiol Ecol. 2007 Sep;61(3):483-95. Epub 2007 Jul 26.

40.

Microbial community structure and dynamics in the largest natural French lake (Lake Bourget).

Comte J, Jacquet S, Viboud S, Fontvieille D, Millery A, Paolini G, Domaizon I.

Microb Ecol. 2006 Jul;52(1):72-89. Epub 2006 May 29.

PMID:
16733620
41.

Succession and regulation factors of small eukaryote community composition in a lacustrine ecosystem (Lake Pavin).

Lepère C, Boucher D, Jardillier L, Domaizon I, Debroas D.

Appl Environ Microbiol. 2006 Apr;72(4):2971-81.

42.

Taxon-specific and seasonal variations in flagellates grazing on heterotrophic bacteria in the oligotrophic Lake Annecy - importance of mixotrophy.

Domaizon I, Viboud S, Fontvieille D.

FEMS Microbiol Ecol. 2003 Dec 1;46(3):317-29. doi: 10.1016/S0168-6496(03)00248-4.

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