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Items: 1 to 50 of 86

1.

Blastochloris tepida, sp. nov., a thermophilic species of the bacteriochlorophyll b-containing genus Blastochloris.

Madigan MT, Resnick SM, Kempher ML, Dohnalkova AC, Takaichi S, Wang-Otomo ZY, Toyoda A, Kurokawa K, Mori H, Tsukatani Y.

Arch Microbiol. 2019 Jul 17. doi: 10.1007/s00203-019-01701-4. [Epub ahead of print]

PMID:
31317227
2.

The energetic basis for hydroxyapatite mineralization by amelogenin variants provides insights into the origin of amelogenesis imperfecta.

Tao J, Shin Y, Jayasinha R, Buchko GW, Burton SD, Dohnalkova AC, Wang Z, Shaw WJ, Tarasevich BJ.

Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):13867-13872. doi: 10.1073/pnas.1815654116. Epub 2019 Jun 25.

PMID:
31239344
3.

Incomplete cell disruption of resistant microbes.

Starke R, Jehmlich N, Alfaro T, Dohnalkova A, Capek P, Bell SL, Hofmockel KS.

Sci Rep. 2019 Apr 4;9(1):5618. doi: 10.1038/s41598-019-42188-9.

4.

Eliciting the impacts of cellular noise on metabolic trade-offs by quantitative mass imaging.

Vasdekis AE, Alanazi H, Silverman AM, Williams CJ, Canul AJ, Cliff JB, Dohnalkova AC, Stephanopoulos G.

Nat Commun. 2019 Feb 19;10(1):848. doi: 10.1038/s41467-019-08717-w.

5.

Quantitative Mapping of Oxidative Stress Response to Lithium Cobalt Oxide Nanoparticles in Single Cells Using Multiplexed in Situ Gene Expression Analysis.

Cui Y, Melby ES, Mensch AC, Laudadio ED, Hang MN, Dohnalkova A, Hu D, Hamers RJ, Orr G.

Nano Lett. 2019 Mar 13;19(3):1990-1997. doi: 10.1021/acs.nanolett.8b05172. Epub 2019 Feb 21.

PMID:
30773885
6.

Impact of lithiated cobalt oxide and phosphate nanoparticles on rainbow trout gill epithelial cells.

Melby ES, Cui Y, Borgatta J, Mensch AC, Hang MN, Chrisler WB, Dohnalkova A, Van Gilder JM, Alvarez CM, Smith JN, Hamers RJ, Orr G.

Nanotoxicology. 2018 Dec;12(10):1166-1181. doi: 10.1080/17435390.2018.1508785. Epub 2018 Nov 19.

PMID:
30451563
7.

Solid-State NMR Identification of Intermolecular Interactions in Amelogenin Bound to Hydroxyapatite.

Arachchige RJ, Burton SD, Lu JX, Ginovska B, Harding LK, Taylor ME, Tao J, Dohnalkova A, Tarasevich BJ, Buchko GW, Shaw WJ.

Biophys J. 2018 Nov 6;115(9):1666-1672. doi: 10.1016/j.bpj.2018.08.027. Epub 2018 Aug 29.

PMID:
30415654
8.

Dichomitus squalens partially tailors its molecular responses to the composition of solid wood.

Daly P, López SC, Peng M, Lancefield CS, Purvine SO, Kim YM, Zink EM, Dohnalkova A, Singan VR, Lipzen A, Dilworth D, Wang M, Ng V, Robinson E, Orr G, Baker SE, Bruijnincx PCA, Hildén KS, Grigoriev IV, Mäkelä MR, de Vries RP.

Environ Microbiol. 2018 Nov;20(11):4141-4156. doi: 10.1111/1462-2920.14416. Epub 2018 Oct 18.

PMID:
30246402
9.

Coupled Kinetics of Ferrihydrite Transformation and As(V) Sequestration under the Effect of Humic Acids: A Mechanistic and Quantitative Study.

Hu S, Lu Y, Peng L, Wang P, Zhu M, Dohnalkova AC, Chen H, Lin Z, Dang Z, Shi Z.

Environ Sci Technol. 2018 Oct 16;52(20):11632-11641. doi: 10.1021/acs.est.8b03492. Epub 2018 Oct 3.

PMID:
30230819
10.

Corrigendum: Saliniramus fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from Hot Lake, Washington, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae.

Cole JK, Morton BR, Cardamone HC, Lake HRR, Dohnalkova AC, Kim YM, Kyle JE, Maezato Y, Dana KL, Metz TO, Romine MF, Nelson WC, Lindemann SR.

Int J Syst Evol Microbiol. 2018 Jun;68(6):2116-2123. doi: 10.1099/ijsem.0.002807.

PMID:
29855404
11.

Phenazine-1-carboxylic acid and soil moisture influence biofilm development and turnover of rhizobacterial biomass on wheat root surfaces.

LeTourneau MK, Marshall MJ, Cliff JB, Bonsall RF, Dohnalkova AC, Mavrodi DV, Devi SI, Mavrodi OV, Harsh JB, Weller DM, Thomashow LS.

Environ Microbiol. 2018 Jun;20(6):2178-2194. doi: 10.1111/1462-2920.14244. Epub 2018 Jul 26.

PMID:
29687554
12.

Salinivirga fredricksonii gen. nov., sp. nov., a heterotrophic halophile isolated from a photosynthetic mat, a member of a novel lineage (Salinarimonadaceae fam. nov.) within the order Rhizobiales, and reclassification of the genus Salinarimonas Liu et al. 2010 into Salinarimonadaceae.

Cole JK, Morton BR, Cardamone HC, Lake HRR, Dohnalkova AC, Kim YM, Kyle JE, Maezato Y, Dana KL, Metz TO, Romine MF, Nelson WC, Lindemann SR.

Int J Syst Evol Microbiol. 2018 May;68(5):1591-1598. doi: 10.1099/ijsem.0.002715. Epub 2018 Mar 26.

PMID:
29580321
13.

A model suite of green algae within the Scenedesmaceae for investigating contrasting desiccation tolerance and morphology.

Cardon ZG, Peredo EL, Dohnalkova AC, Gershone HL, Bezanilla M.

J Cell Sci. 2018 Apr 10;131(7). pii: jcs212233. doi: 10.1242/jcs.212233.

14.

High resolution visualization and exo-proteomics reveal the physiological role of XlnR and AraR in plant biomass colonization and degradation by Aspergillus niger.

Kowalczyk JE, Khosravi C, Purvine S, Dohnalkova A, Chrisler WB, Orr G, Robinson E, Zink E, Wiebenga A, Peng M, Battaglia E, Baker S, de Vries RP.

Environ Microbiol. 2017 Nov;19(11):4587-4598. doi: 10.1111/1462-2920.13923. Epub 2017 Oct 20.

PMID:
29027734
15.

Biogenic manganese oxide nanoparticle formation by a multimeric multicopper oxidase Mnx.

Romano CA, Zhou M, Song Y, Wysocki VH, Dohnalkova AC, Kovarik L, Paša-Tolić L, Tebo BM.

Nat Commun. 2017 Sep 29;8(1):746. doi: 10.1038/s41467-017-00896-8.

16.

Kinetics of Cation and Oxyanion Adsorption and Desorption on Ferrihydrite: Roles of Ferrihydrite Binding Sites and a Unified Model.

Tian L, Shi Z, Lu Y, Dohnalkova AC, Lin Z, Dang Z.

Environ Sci Technol. 2017 Sep 19;51(18):10605-10614. doi: 10.1021/acs.est.7b03249. Epub 2017 Aug 29.

PMID:
28795818
17.

Bridging Zirconia Nodes within a Metal-Organic Framework via Catalytic Ni-Hydroxo Clusters to Form Heterobimetallic Nanowires.

Platero-Prats AE, League AB, Bernales V, Ye J, Gallington LC, Vjunov A, Schweitzer NM, Li Z, Zheng J, Mehdi BL, Stevens AJ, Dohnalkova A, Balasubramanian M, Farha OK, Hupp JT, Browning ND, Fulton JL, Camaioni DM, Lercher JA, Truhlar DG, Gagliardi L, Cramer CJ, Chapman KW.

J Am Chem Soc. 2017 Aug 2;139(30):10410-10418. doi: 10.1021/jacs.7b04997. Epub 2017 Jul 24.

PMID:
28696712
18.

Characterization of a cold-active bacterium isolated from the South Pole "Ice Tunnel".

Madigan MT, Kempher ML, Bender KS, Sullivan P, Matthew Sattley W, Dohnalkova AC, Joye SB.

Extremophiles. 2017 Sep;21(5):891-901. doi: 10.1007/s00792-017-0950-2. Epub 2017 Jul 5.

PMID:
28681112
19.

Mutations That Alter the Bacterial Cell Envelope Increase Lipid Production.

Lemmer KC, Zhang W, Langer SJ, Dohnalkova AC, Hu D, Lemke RA, Piotrowski JS, Orr G, Noguera DR, Donohue TJ.

MBio. 2017 May 23;8(3). pii: e00513-17. doi: 10.1128/mBio.00513-17.

20.

Bottom-up construction of a superstructure in a porous uranium-organic crystal.

Li P, Vermeulen NA, Malliakas CD, Gómez-Gualdrón DA, Howarth AJ, Mehdi BL, Dohnalkova A, Browning ND, O'Keeffe M, Farha OK.

Science. 2017 May 12;356(6338):624-627. doi: 10.1126/science.aam7851. Epub 2017 Apr 20.

PMID:
28428318
21.

Syntrophic anaerobic photosynthesis via direct interspecies electron transfer.

Ha PT, Lindemann SR, Shi L, Dohnalkova AC, Fredrickson JK, Madigan MT, Beyenal H.

Nat Commun. 2017 Jan 9;8:13924. doi: 10.1038/ncomms13924.

22.

Persistent Microvascular Obstruction After Myocardial Infarction Culminates in the Confluence of Ferric Iron Oxide Crystals, Proinflammatory Burden, and Adverse Remodeling.

Kali A, Cokic I, Tang R, Dohnalkova A, Kovarik L, Yang HJ, Kumar A, Prato FS, Wood JC, Underhill D, Marbán E, Dharmakumar R.

Circ Cardiovasc Imaging. 2016 Nov;9(11). pii: e004996.

23.

Production of gold nanoparticles by electrode-respiring Geobacter sulfurreducens biofilms.

Tanzil AH, Sultana ST, Saunders SR, Dohnalkova AC, Shi L, Davenport E, Ha P, Beyenal H.

Enzyme Microb Technol. 2016 Dec;95:69-75. doi: 10.1016/j.enzmictec.2016.07.012. Epub 2016 Jul 22.

24.

Cells Respond to Distinct Nanoparticle Properties with Multiple Strategies As Revealed by Single-Cell RNA-Seq.

Mitchell HD, Markillie LM, Chrisler WB, Gaffrey MJ, Hu D, Szymanski CJ, Xie Y, Melby ES, Dohnalkova A, Taylor RC, Grate EK, Cooley SK, McDermott JE, Heredia-Langner A, Orr G.

ACS Nano. 2016 Nov 22;10(11):10173-10185. Epub 2016 Oct 31.

PMID:
27788331
25.

Two Outer Membrane Proteins Contribute to Caulobacter crescentus Cellular Fitness by Preventing Intracellular S-Layer Protein Accumulation.

Overton KW, Park DM, Yung MC, Dohnalkova AC, Smit J, Jiao Y.

Appl Environ Microbiol. 2016 Dec 1;82(23):6961-6972. doi: 10.1128/AEM.02479-16. Epub 2016 Sep 23.

26.

Impact of different environmental conditions on the aggregation of biogenic U(IV) nanoparticles synthesized by Desulfovibrio alaskensis G20.

Şengör SS, Singh G, Dohnalkova A, Spycher N, Ginn TR, Peyton BM, Sani RK.

Biometals. 2016 Dec;29(6):965-980. Epub 2016 Sep 13.

27.

Iron mineralogy and uranium-binding environment in the rhizosphere of a wetland soil.

Kaplan DI, Kukkadapu R, Seaman JC, Arey BW, Dohnalkova AC, Buettner S, Li D, Varga T, Scheckel KG, Jaffé PR.

Sci Total Environ. 2016 Nov 1;569-570:53-64. doi: 10.1016/j.scitotenv.2016.06.120. Epub 2016 Jun 18.

PMID:
27328400
28.

Evaluating Models of Cellulose Degradation by Fibrobacter succinogenes S85.

Burnet MC, Dohnalkova AC, Neumann AP, Lipton MS, Smith RD, Suen G, Callister SJ.

PLoS One. 2015 Dec 2;10(12):e0143809. doi: 10.1371/journal.pone.0143809. eCollection 2015.

29.

Thermocrinis jamiesonii sp. nov., a thiosulfate-oxidizing, autotropic thermophile isolated from a geothermal spring.

Dodsworth JA, Ong JC, Williams AJ, Dohnalkova AC, Hedlund BP.

Int J Syst Evol Microbiol. 2015 Dec;65(12):4769-75. doi: 10.1099/ijsem.0.000647. Epub 2015 Sep 29.

PMID:
26419502
30.

Adsorption Kinetics in Nanoscale Porous Coordination Polymers.

Nune SK, Thallapally PK, McGrail BP, Annapureddy HV, Dang LX, Mei D, Karri N, Alvine KJ, Olszta MJ, Arey BW, Dohnalkova A.

ACS Appl Mater Interfaces. 2015 Oct 7;7(39):21712-6. doi: 10.1021/acsami.5b04109. Epub 2015 Sep 22.

PMID:
26333118
31.

Pyrobaculum yellowstonensis Strain WP30 Respires on Elemental Sulfur and/or Arsenate in Circumneutral Sulfidic Geothermal Sediments of Yellowstone National Park.

Jay ZJ, Beam JP, Dohnalkova A, Lohmayer R, Bodle B, Planer-Friedrich B, Romine M, Inskeep WP.

Appl Environ Microbiol. 2015 Sep 1;81(17):5907-16. doi: 10.1128/AEM.01095-15. Epub 2015 Jun 19.

32.

Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis.

Pomraning KR, Wei S, Karagiosis SA, Kim YM, Dohnalkova AC, Arey BW, Bredeweg EL, Orr G, Metz TO, Baker SE.

PLoS One. 2015 Apr 23;10(4):e0123188. doi: 10.1371/journal.pone.0123188. eCollection 2015.

33.

Oxygen-dependent regulation of bacterial lipid production.

Lemmer KC, Dohnalkova AC, Noguera DR, Donohue TJ.

J Bacteriol. 2015 May;197(9):1649-58. doi: 10.1128/JB.02510-14. Epub 2015 Mar 2.

34.

An autotrophic H2 -oxidizing, nitrate-respiring, Tc(VII)-reducing Acidovorax sp. isolated from a subsurface oxic-anoxic transition zone.

Lee JH, Fredrickson JK, Plymale AE, Dohnalkova AC, Resch CT, McKinley JP, Shi L.

Environ Microbiol Rep. 2015 Jun;7(3):395-403. doi: 10.1111/1758-2229.12263. Epub 2015 Apr 8. Erratum in: Environ Microbiol Rep. 2018 Apr;10 (2):228.

PMID:
25558059
35.

CO2 exposure at pressure impacts metabolism and stress responses in the model sulfate-reducing bacterium Desulfovibrio vulgaris strain Hildenborough.

Wilkins MJ, Hoyt DW, Marshall MJ, Alderson PA, Plymale AE, Markillie LM, Tucker AE, Walter ED, Linggi BE, Dohnalkova AC, Taylor RC.

Front Microbiol. 2014 Sep 25;5:507. doi: 10.3389/fmicb.2014.00507. eCollection 2014.

36.

Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions.

Cole JK, Hutchison JR, Renslow RS, Kim YM, Chrisler WB, Engelmann HE, Dohnalkova AC, Hu D, Metz TO, Fredrickson JK, Lindemann SR.

Front Microbiol. 2014 Apr 7;5:109. doi: 10.3389/fmicb.2014.00109. eCollection 2014.

37.

Thermoflexus hugenholtzii gen. nov., sp. nov., a thermophilic, microaerophilic, filamentous bacterium representing a novel class in the Chloroflexi, Thermoflexia classis nov., and description of Thermoflexaceae fam. nov. and Thermoflexales ord. nov.

Dodsworth JA, Gevorkian J, Despujos F, Cole JK, Murugapiran SK, Ming H, Li WJ, Zhang G, Dohnalkova A, Hedlund BP.

Int J Syst Evol Microbiol. 2014 Jun;64(Pt 6):2119-27. doi: 10.1099/ijs.0.055855-0. Epub 2014 Mar 27. Erratum in: Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3331.

PMID:
24676733
38.

The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling.

Lindemann SR, Moran JJ, Stegen JC, Renslow RS, Hutchison JR, Cole JK, Dohnalkova AC, Tremblay J, Singh K, Malfatti SA, Chen F, Tringe SG, Beyenal H, Fredrickson JK.

Front Microbiol. 2013 Nov 13;4:323. doi: 10.3389/fmicb.2013.00323. eCollection 2013.

39.

Worming their way into shape: toroidal formations in micellar solutions.

Cardiel JJ, Tonggu L, Dohnalkova AC, de la Iglesia P, Pozzo DC, Wang L, Shen AQ.

ACS Nano. 2013 Nov 26;7(11):9704-13. doi: 10.1021/nn404191s. Epub 2013 Nov 4.

PMID:
24168354
40.

Kallotenue papyrolyticum gen. nov., sp. nov., a cellulolytic and filamentous thermophile that represents a novel lineage (Kallotenuales ord. nov., Kallotenuaceae fam. nov.) within the class Chloroflexia.

Cole JK, Gieler BA, Heisler DL, Palisoc MM, Williams AJ, Dohnalkova AC, Ming H, Yu TT, Dodsworth JA, Li WJ, Hedlund BP.

Int J Syst Evol Microbiol. 2013 Dec;63(Pt 12):4675-82. doi: 10.1099/ijs.0.053348-0. Epub 2013 Aug 15.

PMID:
23950149
41.

METABOLIC SPATIAL VARIABILITY IN ELECTRODE-RESPIRING GEOBACTER SULFURREDUCENS BIOFILMS.

Renslow R, Babauta J, Dohnalkova A, Boyanov M, Kemner K, Majors P, Fredrickson J, Beyenal H.

Energy Environ Sci. 2013 Jun 1;6(6):1827-1836.

42.

Field evidence of selenium bioreduction in a uranium-contaminated aquifer.

Williams KH, Wilkins MJ, N'Guessan AL, Arey B, Dodova E, Dohnalkova A, Holmes D, Lovley DR, Long PE.

Environ Microbiol Rep. 2013 Jun;5(3):444-52.

PMID:
23905166
43.

Flagella-mediated differences in deposition dynamics for Azotobacter vinelandii in porous media.

Lu N, Bevard T, Massoudieh A, Zhang C, Dohnalkova AC, Zilles JL, Nguyen TH.

Environ Sci Technol. 2013 May 21;47(10):5162-70. doi: 10.1021/es3053398. Epub 2013 May 7. Erratum in: Environ Sci Technol. 2013 Jul 16;47(14):8082.

PMID:
23593962
44.

Microstructure and rheology of a flow-induced structured phase in wormlike micellar solutions.

Cardiel JJ, Dohnalkova AC, Dubash N, Zhao Y, Cheung P, Shen AQ.

Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):E1653-60. doi: 10.1073/pnas.1215353110. Epub 2013 Apr 8.

45.

Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals.

White GF, Shi Z, Shi L, Wang Z, Dohnalkova AC, Marshall MJ, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA.

Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6346-51. doi: 10.1073/pnas.1220074110. Epub 2013 Mar 28.

46.

Defining cell culture conditions to improve human norovirus infectivity assays.

Straub TM, Hutchison JR, Bartholomew RA, Valdez CO, Valentine NB, Dohnalkova A, Ozanich RM, Bruckner-Lea CJ.

Water Sci Technol. 2013;67(4):863-8. doi: 10.2166/wst.2012.636.

PMID:
23306266
47.

Development of a proteoliposome model to probe transmembrane electron-transfer reactions.

White GF, Shi Z, Shi L, Dohnalkova AC, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA.

Biochem Soc Trans. 2012 Dec 1;40(6):1257-60. doi: 10.1042/BST20120116.

PMID:
23176464
48.

Fe(III) reduction and U(VI) immobilization by Paenibacillus sp. strain 300A, isolated from Hanford 300A subsurface sediments.

Ahmed B, Cao B, McLean JS, Ica T, Dohnalkova A, Istanbullu O, Paksoy A, Fredrickson JK, Beyenal H.

Appl Environ Microbiol. 2012 Nov;78(22):8001-9. doi: 10.1128/AEM.01844-12. Epub 2012 Sep 7.

49.

Manganese sulfide formation via concomitant microbial manganese oxide and thiosulfate reduction.

Lee JH, Kennedy DW, Dohnalkova A, Moore DA, Nachimuthu P, Reed SB, Fredrickson JK.

Environ Microbiol. 2011 Dec;13(12):3275-88. doi: 10.1111/j.1462-2920.2011.02587.x. Epub 2011 Sep 27.

PMID:
21951417
50.

Human norovirus infection of caco-2 cells grown as a three-dimensional tissue structure.

Straub TM, Bartholomew RA, Valdez CO, Valentine NB, Dohnalkova A, Ozanich RM, Bruckner-Lea CJ, Call DR.

J Water Health. 2011 Jun;9(2):225-40.

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