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Items: 48

1.

Structure, dynamics and phase behavior of short rod inclusions dissolved in a colloidal membrane.

Siavashpouri M, Sharma P, Fung J, Hagan MF, Dogic Z.

Soft Matter. 2019 Sep 21;15(35):7033-7042. doi: 10.1039/c9sm01064e. Epub 2019 Aug 22.

PMID:
31435626
2.

Equation of state of colloidal membranes.

Balchunas AJ, Cabanas RA, Zakhary MJ, Gibaud T, Fraden S, Sharma P, Hagan MF, Dogic Z.

Soft Matter. 2019 Aug 28;15(34):6791-6802. doi: 10.1039/c9sm01054h.

PMID:
31408077
3.

Conformational switching of chiral colloidal rafts regulates raft-raft attractions and repulsions.

Miller JM, Joshi C, Sharma P, Baskaran A, Baskaran A, Grason GM, Hagan MF, Dogic Z.

Proc Natl Acad Sci U S A. 2019 Aug 6;116(32):15792-15801. doi: 10.1073/pnas.1900615116. Epub 2019 Jul 18.

PMID:
31320590
4.

Statistical properties of autonomous flows in 2D active nematics.

Lemma LM, DeCamp SJ, You Z, Giomi L, Dogic Z.

Soft Matter. 2019 Apr 10;15(15):3264-3272. doi: 10.1039/c8sm01877d.

PMID:
30920553
5.

Self-organized dynamics and the transition to turbulence of confined active nematics.

Opathalage A, Norton MM, Juniper MPN, Langeslay B, Aghvami SA, Fraden S, Dogic Z.

Proc Natl Acad Sci U S A. 2019 Mar 12;116(11):4788-4797. doi: 10.1073/pnas.1816733116. Epub 2019 Feb 25.

6.

Microtubules soften due to cross-sectional flattening.

Memet E, Hilitski F, Morris MA, Schwenger WJ, Dogic Z, Mahadevan L.

Elife. 2018 Jun 1;7. pii: e34695. doi: 10.7554/eLife.34695.

7.

Chiral edge fluctuations of colloidal membranes.

Jia LL, Zakhary MJ, Dogic Z, Pelcovits RA, Powers TR.

Phys Rev E. 2017 Jun;95(6-1):060701. doi: 10.1103/PhysRevE.95.060701. Epub 2017 Jun 30.

8.

Structure and Intermolecular Interactions between L-Type Straight Flagellar Filaments.

Louzon D, Ginsburg A, Schwenger W, Dvir T, Dogic Z, Raviv U.

Biophys J. 2017 May 23;112(10):2184-2195. doi: 10.1016/j.bpj.2017.02.038.

9.

Molecular engineering of chiral colloidal liquid crystals using DNA origami.

Siavashpouri M, Wachauf CH, Zakhary MJ, Praetorius F, Dietz H, Dogic Z.

Nat Mater. 2017 Aug;16(8):849-856. doi: 10.1038/nmat4909. Epub 2017 May 22.

10.

Achiral symmetry breaking and positive Gaussian modulus lead to scalloped colloidal membranes.

Gibaud T, Kaplan CN, Sharma P, Zakhary MJ, Ward A, Oldenbourg R, Meyer RB, Kamien RD, Powers TR, Dogic Z.

Proc Natl Acad Sci U S A. 2017 Apr 25;114(17):E3376-E3384. doi: 10.1073/pnas.1617043114. Epub 2017 Apr 14.

11.

Transition from turbulent to coherent flows in confined three-dimensional active fluids.

Wu KT, Hishamunda JB, Chen DT, DeCamp SJ, Chang YW, Fernández-Nieves A, Fraden S, Dogic Z.

Science. 2017 Mar 24;355(6331). pii: eaal1979. doi: 10.1126/science.aal1979.

PMID:
28336609
12.

Filamentous Phages As a Model System in Soft Matter Physics.

Dogic Z.

Front Microbiol. 2016 Jun 30;7:1013. doi: 10.3389/fmicb.2016.01013. eCollection 2016. Review.

13.

Entropic forces drive contraction of cytoskeletal networks.

Braun M, Lansky Z, Hilitski F, Dogic Z, Diez S.

Bioessays. 2016 May;38(5):474-81. doi: 10.1002/bies.201500183. Epub 2016 Mar 21.

PMID:
26996935
14.

ATP Consumption of Eukaryotic Flagella Measured at a Single-Cell Level.

Chen DTN, Heymann M, Fraden S, Nicastro D, Dogic Z.

Biophys J. 2015 Dec 15;109(12):2562-2573. doi: 10.1016/j.bpj.2015.11.003.

15.

Entropic forces stabilize diverse emergent structures in colloidal membranes.

Kang L, Gibaud T, Dogic Z, Lubensky TC.

Soft Matter. 2016 Jan 14;12(2):386-401. doi: 10.1039/c5sm02038g.

PMID:
26472139
16.

Orientational order of motile defects in active nematics.

DeCamp SJ, Redner GS, Baskaran A, Hagan MF, Dogic Z.

Nat Mater. 2015 Nov;14(11):1110-5. doi: 10.1038/nmat4387. Epub 2015 Aug 17.

17.

Trains, tails and loops of partially adsorbed semi-flexible filaments.

Welch D, Lettinga MP, Ripoll M, Dogic Z, Vliegenthart GA.

Soft Matter. 2015 Oct 14;11(38):7507-14. doi: 10.1039/c5sm01457c.

PMID:
26279011
18.

Measuring cohesion between macromolecular filaments one pair at a time: depletion-induced microtubule bundling.

Hilitski F, Ward AR, Cajamarca L, Hagan MF, Grason GM, Dogic Z.

Phys Rev Lett. 2015 Apr 3;114(13):138102. Epub 2015 Apr 2.

PMID:
25884139
19.

Solid friction between soft filaments.

Ward A, Hilitski F, Schwenger W, Welch D, Lau AW, Vitelli V, Mahadevan L, Dogic Z.

Nat Mater. 2015 Jun;14(6):583-8. doi: 10.1038/nmat4222. Epub 2015 Mar 2.

20.

Tunable dynamics of microtubule-based active isotropic gels.

Henkin G, DeCamp SJ, Chen DT, Sanchez T, Dogic Z.

Philos Trans A Math Phys Eng Sci. 2014 Nov 28;372(2029). pii: 20140142. doi: 10.1098/rsta.2014.0142.

21.

Topology and dynamics of active nematic vesicles.

Keber FC, Loiseau E, Sanchez T, DeCamp SJ, Giomi L, Bowick MJ, Marchetti MC, Dogic Z, Bausch AR.

Science. 2014 Sep 5;345(6201):1135-9. doi: 10.1126/science.1254784.

22.

Hierarchical organization of chiral rafts in colloidal membranes.

Sharma P, Ward A, Gibaud T, Hagan MF, Dogic Z.

Nature. 2014 Sep 4;513(7516):77-80. doi: 10.1038/nature13694.

PMID:
25186901
23.

Imprintable membranes from incomplete chiral coalescence.

Zakhary MJ, Gibaud T, Kaplan CN, Barry E, Oldenbourg R, Meyer RB, Dogic Z.

Nat Commun. 2014;5:3063. doi: 10.1038/ncomms4063.

PMID:
24419160
24.

Engineering oscillating microtubule bundles.

Sanchez T, Dogic Z.

Methods Enzymol. 2013;524:205-24. doi: 10.1016/B978-0-12-397945-2.00012-3.

PMID:
23498742
25.

Self-assembly of 2D membranes from mixtures of hard rods and depleting polymers().

Yang Y, Barry E, Dogic Z, Hagan MF.

Soft Matter. 2012 Jan 1;8(3):707-714. Epub 2011 Nov 7.

26.

Spontaneous motion in hierarchically assembled active matter.

Sanchez T, Chen DT, DeCamp SJ, Heymann M, Dogic Z.

Nature. 2012 Nov 15;491(7424):431-4. doi: 10.1038/nature11591. Epub 2012 Nov 7.

27.

Reconfigurable self-assembly through chiral control of interfacial tension.

Gibaud T, Barry E, Zakhary MJ, Henglin M, Ward A, Yang Y, Berciu C, Oldenbourg R, Hagan MF, Nicastro D, Meyer RB, Dogic Z.

Nature. 2012 Jan 4;481(7381):348-51. doi: 10.1038/nature10769.

PMID:
22217941
28.

Cilia-like beating of active microtubule bundles.

Sanchez T, Welch D, Nicastro D, Dogic Z.

Science. 2011 Jul 22;333(6041):456-9. doi: 10.1126/science.1203963.

29.

Adenomatous polyposis coli protein nucleates actin assembly and synergizes with the formin mDia1.

Okada K, Bartolini F, Deaconescu AM, Moseley JB, Dogic Z, Grigorieff N, Gundersen GG, Goode BL.

J Cell Biol. 2010 Jun 28;189(7):1087-96. doi: 10.1083/jcb.201001016. Epub 2010 Jun 21.

30.

Entropy driven self-assembly of nonamphiphilic colloidal membranes.

Barry E, Dogic Z.

Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10348-53. doi: 10.1073/pnas.1000406107. Epub 2010 May 24.

31.

Circularization, photomechanical switching, and a supercoiling transition of actin filaments.

Sanchez T, Kulic IM, Dogic Z.

Phys Rev Lett. 2010 Mar 5;104(9):098103. Epub 2010 Mar 5.

PMID:
20367015
32.

An active biopolymer network controlled by molecular motors.

Koenderink GH, Dogic Z, Nakamura F, Bendix PM, MacKintosh FC, Hartwig JH, Stossel TP, Weitz DA.

Proc Natl Acad Sci U S A. 2009 Sep 8;106(36):15192-7. doi: 10.1073/pnas.0903974106. Epub 2009 Aug 10.

33.

Pair potential of charged colloidal stars.

Huang F, Addas K, Ward A, Flynn NT, Velasco E, Hagan MF, Dogic Z, Fraden S.

Phys Rev Lett. 2009 Mar 13;102(10):108302. Epub 2009 Mar 10.

PMID:
19392166
34.

Direct measurement of the twist penetration length in a single smectic A layer of colloidal virus particles.

Barry E, Dogic Z, Meyer RB, Pelcovits RA, Oldenbourg R.

J Phys Chem B. 2009 Mar 26;113(12):3910-3. doi: 10.1021/jp8067377.

35.

A quantitative analysis of contractility in active cytoskeletal protein networks.

Bendix PM, Koenderink GH, Cuvelier D, Dogic Z, Koeleman BN, Brieher WM, Field CM, Mahadevan L, Weitz DA.

Biophys J. 2008 Apr 15;94(8):3126-36. doi: 10.1529/biophysj.107.117960. Epub 2008 Jan 11.

36.

Bending dynamics of fluctuating biopolymers probed by automated high-resolution filament tracking.

Brangwynne CP, Koenderink GH, Barry E, Dogic Z, MacKintosh FC, Weitz DA.

Biophys J. 2007 Jul 1;93(1):346-59. Epub 2007 Apr 6.

37.

Vorticity banding in rodlike virus suspensions.

Kang K, Lettinga MP, Dogic Z, Dhont JK.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Aug;74(2 Pt 2):026307. Epub 2006 Aug 28.

PMID:
17025539
38.

Counterion-mediated attraction and kinks on loops of semiflexible polyelectrolyte bundles.

Cēbers A, Dogic Z, Janmey PA.

Phys Rev Lett. 2006 Jun 23;96(24):247801. Epub 2006 Jun 21.

PMID:
16907280
39.

Entropy-driven formation of a chiral liquid-crystalline phase of helical filaments.

Barry E, Hensel Z, Dogic Z, Shribak M, Oldenbourg R.

Phys Rev Lett. 2006 Jan 13;96(1):018305. Epub 2006 Jan 11.

PMID:
16486530
40.

Flow behavior of colloidal rodlike viruses in the nematic phase.

Lettinga MP, Dogic Z, Wang H, Vermant J.

Langmuir. 2005 Aug 16;21(17):8048-57.

PMID:
16089419
41.

Melting of lamellar phases in temperature sensitive colloid-polymer suspensions.

Alsayed AM, Dogic Z, Yodh AG.

Phys Rev Lett. 2004 Jul 30;93(5):057801. Epub 2004 Jul 29.

PMID:
15323731
42.

Isotropic-nematic phase transition in suspensions of filamentous virus and the neutral polymer Dextran.

Dogic Z, Purdy KR, Grelet E, Adams M, Fraden S.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 May;69(5 Pt 1):051702. Epub 2004 May 14.

PMID:
15244832
43.

Elongation and fluctuations of semiflexible polymers in a nematic solvent.

Dogic Z, Zhang J, Lau AW, Aranda-Espinoza H, Dalhaimer P, Discher DE, Janmey PA, Kamien RD, Lubensky TC, Yodh AG.

Phys Rev Lett. 2004 Mar 26;92(12):125503. Epub 2004 Mar 24. Erratum in: Phys Rev Lett. 2004 Nov 19;93(21):219902.

PMID:
15089684
44.

Nematic nanotube gels.

Islam MF, Alsayed AM, Dogic Z, Zhang J, Lubensky TC, Yodh AG.

Phys Rev Lett. 2004 Feb 27;92(8):088303. Epub 2004 Feb 27.

PMID:
14995821
45.

Surface freezing and a two-step pathway of the isotropic-smectic phase transition in colloidal rods.

Dogic Z.

Phys Rev Lett. 2003 Oct 17;91(16):165701. Epub 2003 Oct 16.

PMID:
14611416
46.

Measuring the nematic order of suspensions of colloidal fd virus by x-ray diffraction and optical birefringence.

Purdy KR, Dogic Z, Fraden S, Rühm A, Lurio L, Mochrie SG.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Mar;67(3 Pt 1):031708. Epub 2003 Mar 28.

PMID:
12689089
47.

Shear-banding and microstructure of colloids in shear flow.

Dhont JK, Lettinga MP, Dogic Z, Lenstra TA, Wang H, Rathgeber S, Carletto P, Willner L, Frielinghaus H, Lindner P.

Faraday Discuss. 2003;123:157-72; discussion 173-92, 419-21.

PMID:
12638861
48.

Enhanced stability of layered phases in parallel hard spherocylinders due to addition of hard spheres

Dogic Z, Frenkel D, Fraden S.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 Sep;62(3 Pt B):3925-33.

PMID:
11088913

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