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Items: 39

1.

Catchin' Feelings: Experiences of Intimacy During Black College Students' Sexual Encounters.

Dogan J, Hargons C, Meiller C, Oluokun J, Montique C, Malone N.

J Black Sex Relatsh. 2018 Fall;5(2):81-107. doi: 10.1353/bsr.2018.0021.

PMID:
32258245
2.

Characterization of the dynamics and the conformational entropy in the binding between TAZ1 and CTAD-HIF-1α.

Nyqvist I, Dogan J.

Sci Rep. 2019 Nov 12;9(1):16557. doi: 10.1038/s41598-019-53067-8.

3.

Role of Conformational Entropy in Molecular Recognition by TAZ1 of CBP.

Nyqvist I, Andersson E, Dogan J.

J Phys Chem B. 2019 Apr 4;123(13):2882-2888. doi: 10.1021/acs.jpcb.9b01343. Epub 2019 Mar 22.

PMID:
30860376
4.

Culturally relevant risk and protective factors for nonmedical use of prescription opioids among incarcerated African American men.

Wheeler PB, Stevens-Watkins D, Moody M, Dogan J, Lewis D.

Addict Behav. 2019 Jun;93:46-51. doi: 10.1016/j.addbeh.2019.01.014. Epub 2019 Jan 17.

5.

A structurally heterogeneous transition state underlies coupled binding and folding of disordered proteins.

Karlsson E, Andersson E, Dogan J, Gianni S, Jemth P, Camilloni C.

J Biol Chem. 2019 Jan 25;294(4):1230-1239. doi: 10.1074/jbc.RA118.005854. Epub 2018 Dec 4.

6.

Structure and dynamics conspire in the evolution of affinity between intrinsically disordered proteins.

Jemth P, Karlsson E, Vögeli B, Guzovsky B, Andersson E, Hultqvist G, Dogan J, Güntert P, Riek R, Chi CN.

Sci Adv. 2018 Oct 24;4(10):eaau4130. doi: 10.1126/sciadv.aau4130. eCollection 2018 Oct.

7.

The transition state structure for binding between TAZ1 of CBP and the disordered Hif-1α CAD.

Lindström I, Andersson E, Dogan J.

Sci Rep. 2018 May 18;8(1):7872. doi: 10.1038/s41598-018-26213-x.

8.

Dynamics, Conformational Entropy, and Frustration in Protein-Protein Interactions Involving an Intrinsically Disordered Protein Domain.

Lindström I, Dogan J.

ACS Chem Biol. 2018 May 18;13(5):1218-1227. doi: 10.1021/acschembio.7b01105. Epub 2018 Apr 16.

PMID:
29614221
9.

Native Hydrophobic Binding Interactions at the Transition State for Association between the TAZ1 Domain of CBP and the Disordered TAD-STAT2 Are Not a Requirement.

Lindström I, Dogan J.

Biochemistry. 2017 Aug 15;56(32):4145-4153. doi: 10.1021/acs.biochem.7b00428. Epub 2017 Aug 3.

PMID:
28707474
10.

Emergence and evolution of an interaction between intrinsically disordered proteins.

Hultqvist G, Åberg E, Camilloni C, Sundell GN, Andersson E, Dogan J, Chi CN, Vendruscolo M, Jemth P.

Elife. 2017 Apr 11;6. pii: e16059. doi: 10.7554/eLife.16059.

11.

Activation Barrier-Limited Folding and Conformational Sampling of a Dynamic Protein Domain.

Dogan J, Toto A, Andersson E, Gianni S, Jemth P.

Biochemistry. 2016 Sep 20;55(37):5289-95. doi: 10.1021/acs.biochem.6b00573. Epub 2016 Sep 6.

PMID:
27542287
12.

Coupled binding and folding of intrinsically disordered proteins: what can we learn from kinetics?

Gianni S, Dogan J, Jemth P.

Curr Opin Struct Biol. 2016 Feb;36:18-24. doi: 10.1016/j.sbi.2015.11.012. Epub 2015 Dec 22. Review.

PMID:
26720267
13.

Binding Rate Constants Reveal Distinct Features of Disordered Protein Domains.

Dogan J, Jonasson J, Andersson E, Jemth P.

Biochemistry. 2015 Aug 4;54(30):4741-50. doi: 10.1021/acs.biochem.5b00520. Epub 2015 Jul 20.

PMID:
26153298
14.

Deciphering the mechanisms of binding induced folding at nearly atomic resolution: The Φ value analysis applied to IDPs.

Gianni S, Dogan J, Jemth P.

Intrinsically Disord Proteins. 2014 Dec 15;2(1):e970900. doi: 10.4161/idp.28624. eCollection 2014.

15.

Only kinetics can prove conformational selection.

Dogan J, Jemth P.

Biophys J. 2014 Oct 21;107(8):1997-1998. doi: 10.1016/j.bpj.2014.08.037. No abstract available.

16.

Rigidified clicked dimeric ligands for studying the dynamics of the PDZ1-2 supramodule of PSD-95.

Eildal JN, Bach A, Dogan J, Ye F, Zhang M, Jemth P, Strømgaard K.

Chembiochem. 2015 Jan 2;16(1):64-9. doi: 10.1002/cbic.201402547. Epub 2014 Nov 18.

PMID:
25407949
17.

Dynamic and thermodynamic response of the Ras protein Cdc42Hs upon association with the effector domain of PAK3.

Moorman VR, Valentine KG, Bédard S, Kasinath V, Dogan J, Love FM, Wand AJ.

J Mol Biol. 2014 Oct 23;426(21):3520-38. doi: 10.1016/j.jmb.2014.07.031. Epub 2014 Aug 7.

18.

Distinguishing induced fit from conformational selection.

Gianni S, Dogan J, Jemth P.

Biophys Chem. 2014 May;189:33-9. doi: 10.1016/j.bpc.2014.03.003. Epub 2014 Apr 1. Review.

PMID:
24747333
19.

Helical propensity in an intrinsically disordered protein accelerates ligand binding.

Iešmantavičius V, Dogan J, Jemth P, Teilum K, Kjaergaard M.

Angew Chem Int Ed Engl. 2014 Feb 3;53(6):1548-51. doi: 10.1002/anie.201307712. Epub 2014 Jan 21.

PMID:
24449148
20.

A frustrated binding interface for intrinsically disordered proteins.

Jemth P, Mu X, Engström Å, Dogan J.

J Biol Chem. 2014 Feb 28;289(9):5528-33. doi: 10.1074/jbc.M113.537068. Epub 2014 Jan 13.

21.

The binding mechanisms of intrinsically disordered proteins.

Dogan J, Gianni S, Jemth P.

Phys Chem Chem Phys. 2014 Apr 14;16(14):6323-31. doi: 10.1039/c3cp54226b. Epub 2013 Dec 6.

PMID:
24317797
22.

The transition state structure for coupled binding and folding of disordered protein domains.

Dogan J, Mu X, Engström Å, Jemth P.

Sci Rep. 2013;3:2076. doi: 10.1038/srep02076.

23.

Single-molecule studies of intrinsically disordered proteins using solid-state nanopores.

Japrung D, Dogan J, Freedman KJ, Nadzeyka A, Bauerdick S, Albrecht T, Kim MJ, Jemth P, Edel JB.

Anal Chem. 2013 Feb 19;85(4):2449-56. doi: 10.1021/ac3035025. Epub 2013 Feb 6.

PMID:
23327569
24.

Interactions outside the boundaries of the canonical binding groove of a PDZ domain influence ligand binding.

Chi CN, Haq SR, Rinaldo S, Dogan J, Cutruzzolà F, Engström Å, Gianni S, Lundström P, Jemth P.

Biochemistry. 2012 Nov 6;51(44):8971-9. doi: 10.1021/bi300792h. Epub 2012 Oct 23.

PMID:
23046383
25.

Fast association and slow transitions in the interaction between two intrinsically disordered protein domains.

Dogan J, Schmidt T, Mu X, Engström Å, Jemth P.

J Biol Chem. 2012 Oct 5;287(41):34316-24. doi: 10.1074/jbc.M112.399436. Epub 2012 Aug 22.

26.

Characterization of the endopeptidase activity of tripeptidyl-peptidase II.

Eklund S, Dogan J, Jemth P, Kalbacher H, Tomkinson B.

Biochem Biophys Res Commun. 2012 Aug 3;424(3):503-7. doi: 10.1016/j.bbrc.2012.06.144. Epub 2012 Jul 4.

PMID:
22771804
27.

Side-chain interactions form late and cooperatively in the binding reaction between disordered peptides and PDZ domains.

Haq SR, Chi CN, Bach A, Dogan J, Engström Å, Hultqvist G, Karlsson OA, Lundström P, Montemiglio LC, Strømgaard K, Gianni S, Jemth P.

J Am Chem Soc. 2012 Jan 11;134(1):599-605. doi: 10.1021/ja209341w. Epub 2011 Dec 16.

PMID:
22129097
28.

Optimization of NMR spectroscopy of encapsulated proteins dissolved in low viscosity fluids.

Nucci NV, Marques BS, Bédard S, Dogan J, Gledhill JM Jr, Moorman VR, Peterson RW, Valentine KG, Wand AL, Wand AJ.

J Biomol NMR. 2011 Aug;50(4):421-30. doi: 10.1007/s10858-011-9528-y. Epub 2011 Jul 12.

29.

The role of conformational entropy in molecular recognition by calmodulin.

Marlow MS, Dogan J, Frederick KK, Valentine KG, Wand AJ.

Nat Chem Biol. 2010 May;6(5):352-8. doi: 10.1038/nchembio.347. Epub 2010 Apr 11.

30.

Engineering of a femtomolar affinity binding protein to human serum albumin.

Jonsson A, Dogan J, Herne N, Abrahmsén L, Nygren PA.

Protein Eng Des Sel. 2008 Aug;21(8):515-27. doi: 10.1093/protein/gzn028. Epub 2008 May 22.

PMID:
18499681
31.

Structural basis for molecular recognition in an affibody:affibody complex.

Lendel C, Dogan J, Härd T.

J Mol Biol. 2006 Jun 23;359(5):1293-304. Epub 2006 May 6.

PMID:
16750222
32.

Thermodynamics of folding and binding in an affibody:affibody complex.

Dogan J, Lendel C, Härd T.

J Mol Biol. 2006 Jun 23;359(5):1305-15. Epub 2006 May 6.

PMID:
16701696
33.

NMR assignments of the free and bound-state protein components of an anti-idiotypic affibody complex.

Dogan J, Lendel C, Härd T.

J Biomol NMR. 2006;36 Suppl 1:13. No abstract available.

PMID:
16456703
34.
35.

Thermodynamics of folding, stabilization, and binding in an engineered protein--protein complex.

Dincbas-Renqvist V, Lendel C, Dogan J, Wahlberg E, Härd T.

J Am Chem Soc. 2004 Sep 15;126(36):11220-30.

PMID:
15355103
36.

Biophysical characterization of Z(SPA-1)--a phage-display selected binder to protein A.

Lendel C, Dincbas-Renqvist V, Flores A, Wahlberg E, Dogan J, Nygren PA, Härd T.

Protein Sci. 2004 Aug;13(8):2078-88. Epub 2004 Jul 6.

37.

Mechanism of Phosphorus-Carbon Bond Cleavage in Tertiary Phosphines. An Optimized Synthesis of 1,2-Bis(phenylphosphino)ethane.

Dogan J, Schulte JB, Sweigers GF, Wild SB.

J Org Chem. 2000 Jul 28;65(15):4782. No abstract available.

PMID:
10968772
38.
39.

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