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Items: 41

1.

TeoNAM: A Nested Association Mapping Population for Domestication and Agronomic Trait Analysis in Maize.

Chen Q, Yang CJ, York AM, Xue W, Daskalska LL, DeValk CA, Krueger KW, Lawton SB, Spiegelberg BG, Schnell JM, Neumeyer MA, Perry JS, Peterson AC, Kim B, Bergstrom L, Yang L, Barber IC, Tian F, Doebley JF.

Genetics. 2019 Sep 3. pii: genetics.302594.2019. doi: 10.1534/genetics.119.302594. [Epub ahead of print]

2.

The genome-wide dynamics of purging during selfing in maize.

Roessler K, Muyle A, Diez CM, Gaut GRJ, Bousios A, Stitzer MC, Seymour DK, Doebley JF, Liu Q, Gaut BS.

Nat Plants. 2019 Sep;5(9):980-990. doi: 10.1038/s41477-019-0508-7. Epub 2019 Sep 2.

PMID:
31477888
3.

Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize.

Xue W, Anderson SN, Wang X, Yang L, Crisp PA, Li Q, Noshay J, Albert PS, Birchler JA, Bilinski P, Stitzer MC, Ross-Ibarra J, Flint-Garcia S, Chen X, Springer NM, Doebley JF.

Genetics. 2019 Sep;213(1):143-160. doi: 10.1534/genetics.119.302378. Epub 2019 Jul 18.

4.

The genetic architecture of teosinte catalyzed and constrained maize domestication.

Yang CJ, Samayoa LF, Bradbury PJ, Olukolu BA, Xue W, York AM, Tuholski MR, Wang W, Daskalska LL, Neumeyer MA, Sanchez-Gonzalez JJ, Romay MC, Glaubitz JC, Sun Q, Buckler ES, Holland JB, Doebley JF.

Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5643-5652. doi: 10.1073/pnas.1820997116. Epub 2019 Mar 6.

5.

Stepwise cis-Regulatory Changes in ZCN8 Contribute to Maize Flowering-Time Adaptation.

Guo L, Wang X, Zhao M, Huang C, Li C, Li D, Yang CJ, York AM, Xue W, Xu G, Liang Y, Chen Q, Doebley JF, Tian F.

Curr Biol. 2018 Sep 24;28(18):3005-3015.e4. doi: 10.1016/j.cub.2018.07.029. Epub 2018 Sep 13.

6.

Construction of the third-generation Zea mays haplotype map.

Bukowski R, Guo X, Lu Y, Zou C, He B, Rong Z, Wang B, Xu D, Yang B, Xie C, Fan L, Gao S, Xu X, Zhang G, Li Y, Jiao Y, Doebley JF, Ross-Ibarra J, Lorant A, Buffalo V, Romay MC, Buckler ES, Ware D, Lai J, Sun Q, Xu Y.

Gigascience. 2018 Apr 1;7(4):1-12. doi: 10.1093/gigascience/gix134.

7.

ZmCCT9 enhances maize adaptation to higher latitudes.

Huang C, Sun H, Xu D, Chen Q, Liang Y, Wang X, Xu G, Tian J, Wang C, Li D, Wu L, Yang X, Jin W, Doebley JF, Tian F.

Proc Natl Acad Sci U S A. 2018 Jan 9;115(2):E334-E341. doi: 10.1073/pnas.1718058115. Epub 2017 Dec 26.

8.

Genome-wide Analysis of Transcriptional Variability in a Large Maize-Teosinte Population.

Wang X, Chen Q, Wu Y, Lemmon ZH, Xu G, Huang C, Liang Y, Xu D, Li D, Doebley JF, Tian F.

Mol Plant. 2018 Mar 5;11(3):443-459. doi: 10.1016/j.molp.2017.12.011. Epub 2017 Dec 22.

9.

Defining the Role of the MADS-Box Gene, Zea Agamous-like1, a Target of Selection During Maize Domestication.

Wills DM, Fang Z, York AM, Holland JB, Doebley JF.

J Hered. 2018 Mar 16;109(3):333-338. doi: 10.1093/jhered/esx073.

PMID:
28992108
10.

Selection During Maize Domestication Targeted a Gene Network Controlling Plant and Inflorescence Architecture.

Studer AJ, Wang H, Doebley JF.

Genetics. 2017 Oct;207(2):755-765. doi: 10.1534/genetics.117.300071. Epub 2017 Jul 28.

11.

A Gene for Genetic Background in Zea mays: Fine-Mapping enhancer of teosinte branched1.2 to a YABBY Class Transcription Factor.

Yang CJ, Kursel LE, Studer AJ, Bartlett ME, Whipple CJ, Doebley JF.

Genetics. 2016 Dec;204(4):1573-1585. Epub 2016 Oct 11.

12.

Mapping Prolificacy QTL in Maize and Teosinte.

Yang L, Yang CJ, Cheng Q, Xue W, Doebley JF.

J Hered. 2016;107(7):674-678. Epub 2016 Sep 22.

PMID:
27660498
13.

Fine Mapping of a QTL Associated with Kernel Row Number on Chromosome 1 of Maize.

Calderón CI, Yandell BS, Doebley JF.

PLoS One. 2016 Mar 1;11(3):e0150276. doi: 10.1371/journal.pone.0150276. eCollection 2016.

14.

Evidence That the Origin of Naked Kernels During Maize Domestication Was Caused by a Single Amino Acid Substitution in tga1.

Wang H, Studer AJ, Zhao Q, Meeley R, Doebley JF.

Genetics. 2015 Jul;200(3):965-74. doi: 10.1534/genetics.115.175752. Epub 2015 May 4.

15.

The role of cis regulatory evolution in maize domestication.

Lemmon ZH, Bukowski R, Sun Q, Doebley JF.

PLoS Genet. 2014 Nov 6;10(11):e1004745. doi: 10.1371/journal.pgen.1004745. eCollection 2014 Nov.

16.

Genetic dissection of a genomic region with pleiotropic effects on domestication traits in maize reveals multiple linked QTL.

Lemmon ZH, Doebley JF.

Genetics. 2014 Sep;198(1):345-53. doi: 10.1534/genetics.114.165845. Epub 2014 Jun 20.

17.

Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication.

Lang Z, Wills DM, Lemmon ZH, Shannon LM, Bukowski R, Wu Y, Messing J, Doebley JF.

J Hered. 2014 Jul-Aug;105(4):576-582. Epub 2014 Mar 28.

18.

From many, one: genetic control of prolificacy during maize domestication.

Wills DM, Whipple CJ, Takuno S, Kursel LE, Shannon LM, Ross-Ibarra J, Doebley JF.

PLoS Genet. 2013 Jun;9(6):e1003604. doi: 10.1371/journal.pgen.1003604. Epub 2013 Jun 27.

19.

ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize.

Hung HY, Shannon LM, Tian F, Bradbury PJ, Chen C, Flint-Garcia SA, McMullen MD, Ware D, Buckler ES, Doebley JF, Holland JB.

Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):E1913-21. doi: 10.1073/pnas.1203189109. Epub 2012 Jun 18.

20.

Evidence for a natural allelic series at the maize domestication locus teosinte branched1.

Studer AJ, Doebley JF.

Genetics. 2012 Jul;191(3):951-8. doi: 10.1534/genetics.112.138479. Epub 2012 Apr 13.

21.

Do large effect QTL fractionate? A case study at the maize domestication QTL teosinte branched1.

Studer AJ, Doebley JF.

Genetics. 2011 Jul;188(3):673-81. doi: 10.1534/genetics.111.126508. Epub 2011 Apr 21.

22.

Using association mapping in teosinte to investigate the function of maize selection-candidate genes.

Weber AL, Zhao Q, McMullen MD, Doebley JF.

PLoS One. 2009 Dec 9;4(12):e8227. doi: 10.1371/journal.pone.0008227.

23.

The molecular genetics of crop domestication.

Doebley JF, Gaut BS, Smith BD.

Cell. 2006 Dec 29;127(7):1309-21. Review.

24.

A unified mixed-model method for association mapping that accounts for multiple levels of relatedness.

Yu J, Pressoir G, Briggs WH, Vroh Bi I, Yamasaki M, Doebley JF, McMullen MD, Gaut BS, Nielsen DM, Holland JB, Kresovich S, Buckler ES.

Nat Genet. 2006 Feb;38(2):203-8. Epub 2005 Dec 25.

PMID:
16380716
25.

A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement.

Yamasaki M, Tenaillon MI, Bi IV, Schroeder SG, Sanchez-Villeda H, Doebley JF, Gaut BS, McMullen MD.

Plant Cell. 2005 Nov;17(11):2859-72. Epub 2005 Oct 14.

26.
27.

The origin of the naked grains of maize.

Wang H, Nussbaum-Wagler T, Li B, Zhao Q, Vigouroux Y, Faller M, Bomblies K, Lukens L, Doebley JF.

Nature. 2005 Aug 4;436(7051):714-9.

28.

The effects of artificial selection on the maize genome.

Wright SI, Bi IV, Schroeder SG, Yamasaki M, Doebley JF, McMullen MD, Gaut BS.

Science. 2005 May 27;308(5726):1310-4. Erratum in: Science. 2005 Oct 7;310(5745):54.

29.

Molecular evolution of FLORICAULA/LEAFY orthologs in the Andropogoneae (Poaceae).

Bomblies K, Doebley JF.

Mol Biol Evol. 2005 Apr;22(4):1082-94. Epub 2005 Feb 2.

PMID:
15689530
30.

The role of barren stalk1 in the architecture of maize.

Gallavotti A, Zhao Q, Kyozuka J, Meeley RB, Ritter MK, Doebley JF, Pè ME, Schmidt RJ.

Nature. 2004 Dec 2;432(7017):630-5.

PMID:
15577912
31.

Pattern of diversity in the genomic region near the maize domestication gene tb1.

Clark RM, Linton E, Messing J, Doebley JF.

Proc Natl Acad Sci U S A. 2004 Jan 20;101(3):700-7. Epub 2003 Dec 30.

32.

Marcus rhoades, preferential segregation and meiotic drive.

Birchler JA, Dawe RK, Doebley JF.

Genetics. 2003 Jul;164(3):835-41. No abstract available.

33.

Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).

Tenaillon MI, Sawkins MC, Long AD, Gaut RL, Doebley JF, Gaut BS.

Proc Natl Acad Sci U S A. 2001 Jul 31;98(16):9161-6. Epub 2001 Jul 24.

34.
35.

Meiotic drive of chromosomal knobs reshaped the maize genome.

Buckler ES 4th, Phelps-Durr TL, Buckler CS, Dawe RK, Doebley JF, Holtsford TP.

Genetics. 1999 Sep;153(1):415-26.

36.

DNA sequence evidence for the segmental allotetraploid origin of maize.

Gaut BS, Doebley JF.

Proc Natl Acad Sci U S A. 1997 Jun 24;94(13):6809-14.

37.

Evolution of anthocyanin biosynthesis in maize kernels: the role of regulatory and enzymatic loci.

Hanson MA, Gaut BS, Stec AO, Fuerstenberg SI, Goodman MM, Coe EH, Doebley JF.

Genetics. 1996 Jul;143(3):1395-407.

38.

Convergent domestication of cereal crops by independent mutations at corresponding genetic Loci.

Paterson AH, Lin YR, Li Z, Schertz KF, Doebley JF, Pinson SR, Liu SC, Stansel JW, Irvine JE.

Science. 1995 Sep 22;269(5231):1714-8.

PMID:
17821643
39.

Insertion/deletion mutations in the Zea chloroplast genome.

Doebley JF, Ma DP, Renfroe WT.

Curr Genet. 1987;11(8):617-24.

PMID:
2836083
40.

EXCEPTIONAL GENETIC DIVERGENCE OF NORTHERN FLINT CORN.

Doebley JF, Goodman OM, Stuber CW.

Am J Bot. 1986 Jan;73(1):64-69. doi: 10.1002/j.1537-2197.1986.tb09681.x.

PMID:
30139112
41.

Zea diploperennis (Gramineae): A New Teosinte from Mexico.

Iltis HH, Doebley JF, M RG, Pazy B.

Science. 1979 Jan 12;203(4376):186-8.

PMID:
17834721

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