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Items: 1 to 50 of 104

1.

A census-based estimate of Earth's bacterial and archaeal diversity.

Louca S, Mazel F, Doebeli M, Parfrey LW.

PLoS Biol. 2019 Feb 4;17(2):e3000106. doi: 10.1371/journal.pbio.3000106. eCollection 2019 Feb.

2.

The Cultural Brain Hypothesis: How culture drives brain expansion, sociality, and life history.

Muthukrishna M, Doebeli M, Chudek M, Henrich J.

PLoS Comput Biol. 2018 Nov 8;14(11):e1006504. doi: 10.1371/journal.pcbi.1006504. eCollection 2018 Nov.

3.

Bacterial diversification through geological time.

Louca S, Shih PM, Pennell MW, Fischer WW, Parfrey LW, Doebeli M.

Nat Ecol Evol. 2018 Sep;2(9):1458-1467. doi: 10.1038/s41559-018-0625-0. Epub 2018 Jul 30.

PMID:
30061564
4.

Function and functional redundancy in microbial systems.

Louca S, Polz MF, Mazel F, Albright MBN, Huber JA, O'Connor MI, Ackermann M, Hahn AS, Srivastava DS, Crowe SA, Doebeli M, Parfrey LW.

Nat Ecol Evol. 2018 Jun;2(6):936-943. doi: 10.1038/s41559-018-0519-1. Epub 2018 Apr 16. Review.

PMID:
29662222
5.

Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem.

Louca S, Doebeli M, Parfrey LW.

Microbiome. 2018 Feb 26;6(1):41. doi: 10.1186/s40168-018-0420-9.

6.

Efficient comparative phylogenetics on large trees.

Louca S, Doebeli M.

Bioinformatics. 2018 Mar 15;34(6):1053-1055. doi: 10.1093/bioinformatics/btx701.

PMID:
29091997
7.

Structural, magnetic and electronic properties of pulsed-laser-deposition grown SrFeO<sub>3-δ</sub> thin films and SrFeO<sub>3-δ</sub> /La<sub>2/3</sub>Ca<sub>1/3</sub>MnO<sub>3</sub> multilayers.

Perret E, Sen K, Khmaladze J, Mallett B, Yazdi-Rizi M, Marsik P, Das S, Marozau I, Uribe-Laverde M, de Andrés Prada R, Strempfer J, Doebeli M, Biskup N, Varela M, Mathis YL, Bernhard C.

J Phys Condens Matter. 2017 Oct 16. doi: 10.1088/1361-648X/aa93a6. [Epub ahead of print]

PMID:
29034904
8.

Rethinking the evolution of specialization: A model for the evolution of phenotypic heterogeneity.

Rubin IN, Doebeli M.

J Theor Biol. 2017 Dec 21;435:248-264. doi: 10.1016/j.jtbi.2017.09.020. Epub 2017 Sep 21.

PMID:
28943404
9.

High taxonomic variability despite stable functional structure across microbial communities.

Louca S, Jacques SMS, Pires APF, Leal JS, Srivastava DS, Parfrey LW, Farjalla VF, Doebeli M.

Nat Ecol Evol. 2016 Dec 5;1(1):15. doi: 10.1038/s41559-016-0015.

PMID:
28812567
10.

Functional structure of the bromeliad tank microbiome is strongly shaped by local geochemical conditions.

Louca S, Jacques SMS, Pires APF, Leal JS, González AL, Doebeli M, Farjalla VF.

Environ Microbiol. 2017 Aug;19(8):3132-3151. doi: 10.1111/1462-2920.13788. Epub 2017 Jun 22.

PMID:
28488752
11.

Taxonomic variability and functional stability in microbial communities infected by phages.

Louca S, Doebeli M.

Environ Microbiol. 2017 Oct;19(10):3863-3878. doi: 10.1111/1462-2920.13743. Epub 2017 May 11.

PMID:
28371143
12.

Towards a mechanistic foundation of evolutionary theory.

Doebeli M, Ispolatov Y, Simon B.

Elife. 2017 Feb 15;6. pii: e23804. doi: 10.7554/eLife.23804.

13.

Diversity and Coevolutionary Dynamics in High-Dimensional Phenotype Spaces.

Doebeli M, Ispolatov I.

Am Nat. 2017 Feb;189(2):105-120. doi: 10.1086/689891. Epub 2016 Dec 9.

PMID:
28107053
14.

Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone.

Louca S, Hawley AK, Katsev S, Torres-Beltran M, Bhatia MP, Kheirandish S, Michiels CC, Capelle D, Lavik G, Doebeli M, Crowe SA, Hallam SJ.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):E5925-E5933. Epub 2016 Sep 21.

15.

Decoupling function and taxonomy in the global ocean microbiome.

Louca S, Parfrey LW, Doebeli M.

Science. 2016 Sep 16;353(6305):1272-7. doi: 10.1126/science.aaf4507.

16.

Modeling evolutionary transitions in social insects.

Doebeli M, Abouheif E.

Elife. 2016 Jan 18;5:e12721. doi: 10.7554/eLife.12721.

17.

Individual-based models for adaptive diversification in high-dimensional phenotype spaces.

Ispolatov I, Madhok V, Doebeli M.

J Theor Biol. 2016 Feb 7;390:97-105. doi: 10.1016/j.jtbi.2015.10.009. Epub 2015 Nov 17.

PMID:
26598329
18.

Calibration and analysis of genome-based models for microbial ecology.

Louca S, Doebeli M.

Elife. 2015 Oct 16;4:e08208. doi: 10.7554/eLife.08208.

19.

Transient dynamics of competitive exclusion in microbial communities.

Louca S, Doebeli M.

Environ Microbiol. 2016 Jun;18(6):1863-74. doi: 10.1111/1462-2920.13058. Epub 2015 Dec 2.

PMID:
26404023
20.

Chaos in high-dimensional dissipative dynamical systems.

Ispolatov I, Madhok V, Allende S, Doebeli M.

Sci Rep. 2015 Jul 30;5:12506. doi: 10.1038/srep12506.

21.

Organismal complexity and the potential for evolutionary diversification.

Svardal H, Rueffler C, Doebeli M.

Evolution. 2014 Nov;68(11):3248-59. doi: 10.1111/evo.12492. Epub 2014 Sep 2.

PMID:
25087681
22.

Multidimensional (co)evolutionary stability.

Débarre F, Nuismer SL, Doebeli M.

Am Nat. 2014 Aug;184(2):158-71. doi: 10.1086/677137. Epub 2014 Jul 8.

PMID:
25058277
23.

Studying the emergence of complicated group-level cultural traits requires a mathematical framework.

Doebeli M, Simon B.

Behav Brain Sci. 2014 Jun;37(3):258-9. doi: 10.1017/S0140525X13002859.

PMID:
24970404
24.

Assessing host extinction risk following exposure to Batrachochytrium dendrobatidis.

Louca S, Lampo M, Doebeli M.

Proc Biol Sci. 2014 May 7;281(1785):20132783. doi: 10.1098/rspb.2013.2783. Print 2014 Jun 22.

25.

Social evolution in structured populations.

Débarre F, Hauert C, Doebeli M.

Nat Commun. 2014 Mar 6;5:3409. doi: 10.1038/ncomms4409.

PMID:
24598979
26.

Chaos and unpredictability in evolution.

Doebeli M, Ispolatov I.

Evolution. 2014 May;68(5):1365-73. doi: 10.1111/evo.12354. Epub 2014 Mar 20.

PMID:
24433364
27.

Limiting similarity, species packing, and the shape of competition kernels.

Leimar O, Sasaki A, Doebeli M, Dieckmann U.

J Theor Biol. 2013 Dec 21;339:3-13. doi: 10.1016/j.jtbi.2013.08.005. Epub 2013 Aug 13.

PMID:
23954548
28.

A comment on "Towards a rigorous framework for studying 2-player continuous games" by Shade T. Shutters, Journal of Theoretical Biology 321, 40-43, 2013.

Doebeli M, Hauert C, Killingback T.

J Theor Biol. 2013 Nov 7;336:240-1. doi: 10.1016/j.jtbi.2013.05.035. Epub 2013 Jun 11. No abstract available.

PMID:
23770105
29.

Towards a general theory of group selection.

Simon B, Fletcher JA, Doebeli M.

Evolution. 2013 Jun;67(6):1561-72. doi: 10.1111/j.1558-5646.2012.01835.x. Epub 2012 Nov 29.

PMID:
23730751
30.

Parallel evolutionary dynamics of adaptive diversification in Escherichia coli.

Herron MD, Doebeli M.

PLoS Biol. 2013;11(2):e1001490. doi: 10.1371/journal.pbio.1001490. Epub 2013 Feb 19.

31.

Consolidating birth-death and death-birth processes in structured populations.

Zukewich J, Kurella V, Doebeli M, Hauert C.

PLoS One. 2013;8(1):e54639. doi: 10.1371/journal.pone.0054639. Epub 2013 Jan 28.

32.

Reputation-based conditional interaction supports cooperation in well-mixed prisoner's dilemmas.

Chen X, Schick A, Doebeli M, Blachford A, Wang L.

PLoS One. 2012;7(5):e36260. doi: 10.1371/journal.pone.0036260. Epub 2012 May 17.

33.

Symmetric competition as a general model for single-species adaptive dynamics.

Doebeli M, Ispolatov I.

J Math Biol. 2013 Aug;67(2):169-84. doi: 10.1007/s00285-012-0547-4. Epub 2012 May 19.

PMID:
22610397
34.

Division of labour and the evolution of multicellularity.

Ispolatov I, Ackermann M, Doebeli M.

Proc Biol Sci. 2012 May 7;279(1734):1768-76. doi: 10.1098/rspb.2011.1999. Epub 2011 Dec 7.

35.

Hamilton's rule in multi-level selection models.

Simon B, Fletcher JA, Doebeli M.

J Theor Biol. 2012 Apr 21;299:55-63. doi: 10.1016/j.jtbi.2011.07.014. Epub 2011 Jul 30.

PMID:
21820447
36.

Adaptive diversification of a plastic trait in a predictably fluctuating environment.

Herron MD, Doebeli M.

J Theor Biol. 2011 Sep 21;285(1):58-68. doi: 10.1016/j.jtbi.2011.06.007. Epub 2011 Jun 28.

PMID:
21729707
37.

The repeatability of adaptive radiation during long-term experimental evolution of Escherichia coli in a multiple nutrient environment.

Saxer G, Doebeli M, Travisano M.

PLoS One. 2010 Dec 2;5(12):e14184. doi: 10.1371/journal.pone.0014184.

38.

Inclusive fitness is just bookkeeping.

Doebeli M.

Nature. 2010 Oct 7;467(7316):661. doi: 10.1038/467661b. No abstract available.

PMID:
20930829
39.

A model for the evolutionary diversification of religions.

Doebeli M, Ispolatov I.

J Theor Biol. 2010 Dec 21;267(4):676-84. doi: 10.1016/j.jtbi.2010.09.013. Epub 2010 Sep 18.

PMID:
20854828
40.

Continuously stable strategies as evolutionary branching points.

Doebeli M, Ispolatov I.

J Theor Biol. 2010 Oct 21;266(4):529-35. doi: 10.1016/j.jtbi.2010.06.036. Epub 2010 Jul 16.

PMID:
20638389
41.

Epistasis and frequency dependence influence the fitness of an adaptive mutation in a diversifying lineage.

Le Gac M, Doebeli M.

Mol Ecol. 2010 Jun 1;19(12):2430-8. doi: 10.1111/j.1365-294X.2010.04664.x. Epub 2010 May 21.

PMID:
20497320
42.

Complexity and diversity.

Doebeli M, Ispolatov I.

Science. 2010 Apr 23;328(5977):494-7. doi: 10.1126/science.1187468.

43.

Speciation due to hybrid necrosis in plant-pathogen models.

Ispolatov I, Doebeli M.

Evolution. 2009 Dec;63(12):3076-84. doi: 10.1111/j.1558-5646.2009.00800.x. Epub 2009 Aug 6.

PMID:
19674099
44.

Environmental viscosity does not affect the evolution of cooperation during experimental evolution of colicigenic bacteria.

Le Gac M, Doebeli M.

Evolution. 2010 Feb 1;64(2):522-33. doi: 10.1111/j.1558-5646.2009.00814.x. Epub 2009 Aug 6.

PMID:
19674096
45.

Fluctuating population dynamics promotes the evolution of phenotypic plasticity.

Svanbäck R, Pineda-Krch M, Doebeli M.

Am Nat. 2009 Aug;174(2):176-89. doi: 10.1086/600112.

PMID:
19519278
46.

Spatial structure leads to ecological breakdown and loss of diversity.

Saxer G, Doebeli M, Travisano M.

Proc Biol Sci. 2009 Jun 7;276(1664):2065-70. doi: 10.1098/rspb.2008.1827. Epub 2009 Mar 4.

47.

On luck and sex.

Blachford A, Doebeli M.

Evolution. 2009 Jan;63(1):40-7. doi: 10.1111/j.1558-5646.2008.00523.x. Epub 2008 Sep 18.

PMID:
18803688
48.

A simple and general explanation for the evolution of altruism.

Fletcher JA, Doebeli M.

Proc Biol Sci. 2009 Jan 7;276(1654):13-9. doi: 10.1098/rspb.2008.0829.

49.

Self-destructive cooperation mediated by phenotypic noise.

Ackermann M, Stecher B, Freed NE, Songhet P, Hardt WD, Doebeli M.

Nature. 2008 Aug 21;454(7207):987-90. doi: 10.1038/nature07067.

PMID:
18719588
50.

The continuous prisoner's dilemma and the evolution of cooperation through reciprocal altruism with variable investment.

Killingback T, Doebeli M.

Am Nat. 2002 Oct;160(4):421-38. doi: 10.1086/342070.

PMID:
18707520

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