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Items: 1 to 50 of 84

1.

Deconvolution of light sheet microscopy recordings.

Becker K, Saghafi S, Pende M, Sabdyusheva-Litschauer I, Hahn CM, Foroughipour M, Jährling N, Dodt HU.

Sci Rep. 2019 Nov 26;9(1):17625. doi: 10.1038/s41598-019-53875-y.

2.

Early Aβ reduction prevents progression of cerebral amyloid angiopathy.

Schelle J, Wegenast-Braun BM, Fritschi SK, Kaeser SA, Jährling N, Eicke D, Skodras A, Beschorner N, Obermueller U, Häsler LM, Wolfer DP, Mueggler T, Shimshek DR, Neumann U, Dodt HU, Staufenbiel M, Jucker M.

Ann Neurol. 2019 Oct;86(4):561-571. doi: 10.1002/ana.25562. Epub 2019 Aug 19.

PMID:
31359452
3.

High-resolution imaging of fluorescent whole mouse brains using stabilised organic media (sDISCO).

Hahn C, Becker K, Saghafi S, Pende M, Avdibašić A, Foroughipour M, Heinz DE, Wotjak CT, Dodt HU.

J Biophotonics. 2019 Aug;12(8):e201800368. doi: 10.1002/jbio.201800368. Epub 2019 Apr 29.

PMID:
30932329
4.

High-resolution ultramicroscopy of the developing and adult nervous system in optically cleared Drosophila melanogaster.

Pende M, Becker K, Wanis M, Saghafi S, Kaur R, Hahn C, Pende N, Foroughipour M, Hummel T, Dodt HU.

Nat Commun. 2018 Nov 9;9(1):4731. doi: 10.1038/s41467-018-07192-z.

5.

Whole-Brain Analysis of Cells and Circuits by Tissue Clearing and Light-Sheet Microscopy.

Mano T, Albanese A, Dodt HU, Erturk A, Gradinaru V, Treweek JB, Miyawaki A, Chung K, Ueda HR.

J Neurosci. 2018 Oct 31;38(44):9330-9337. doi: 10.1523/JNEUROSCI.1677-18.2018. Review.

6.

Reshaping a multimode laser beam into a constructed Gaussian beam for generating a thin light sheet.

Saghafi S, Haghi-Danaloo N, Becker K, Sabdyusheva I, Foroughipour M, Hahn C, Pende M, Wanis M, Bergmann M, Stift J, Hegedus B, Dome B, Dodt HU.

J Biophotonics. 2018 Jun;11(6):e201700213. doi: 10.1002/jbio.201700213. Epub 2018 Mar 24.

PMID:
29457696
7.

Light-Sheet Fluorescence Microscopy: Chemical Clearing and Labeling Protocols for Ultramicroscopy.

Jährling N, Becker K, Saghafi S, Dodt HU.

Methods Mol Biol. 2017;1563:33-49. doi: 10.1007/978-1-4939-6810-7_3.

PMID:
28324600
8.

Outlook on optimizing ultramicroscopy imaging technique through optical characterization.

Saghafi S, Becker K, Hahn C, Pende M, Jährling N, Wanis M, Sabdyusheva-Litschauer I, Foroughipour M, Niendorf A, Dodt HU.

Microsc Res Tech. 2018 Sep;81(9):929-935. doi: 10.1002/jemt.22815. Epub 2016 Dec 20.

PMID:
28000307
9.

Trichobilharzia regenti (Schistosomatidae): 3D imaging techniques in characterization of larval migration through the CNS of vertebrates.

Bulantová J, Macháček T, Panská L, Krejčí F, Karch J, Jährling N, Saghafi S, Dodt HU, Horák P.

Micron. 2016 Apr;83:62-71. doi: 10.1016/j.micron.2016.01.009. Epub 2016 Feb 3.

PMID:
26897588
10.

Ultramicroscopy: development and outlook.

Dodt HU, Saghafi S, Becker K, Jährling N, Hahn C, Pende M, Wanis M, Niendorf A.

Neurophotonics. 2015 Oct;2(4):041407. doi: 10.1117/1.NPh.2.4.041407. Epub 2015 Nov 9.

11.

Cerebral β-Amyloidosis in Mice Investigated by Ultramicroscopy.

Jährling N, Becker K, Wegenast-Braun BM, Grathwohl SA, Jucker M, Dodt HU.

PLoS One. 2015 May 27;10(5):e0125418. doi: 10.1371/journal.pone.0125418. eCollection 2015.

12.

Microscopy. The superresolved brain.

Dodt HU.

Science. 2015 Jan 30;347(6221):474-5. doi: 10.1126/science.aaa5084. No abstract available.

PMID:
25635071
13.

Reduction of photo bleaching and long term archiving of chemically cleared GFP-expressing mouse brains.

Becker K, Hahn CM, Saghafi S, Jährling N, Wanis M, Dodt HU.

PLoS One. 2014 Dec 2;9(12):e114149. doi: 10.1371/journal.pone.0114149. eCollection 2014.

14.

Infrared video microscopy for visualizing neurons and neuronal excitation in brain slices.

Dodt HU, Becker K, Zieglgänsberger W.

Cold Spring Harb Protoc. 2013 Dec 1;2013(12):1149-52. doi: 10.1101/pdb.prot079434.

PMID:
24298032
15.

Prdm6 is essential for cardiovascular development in vivo.

Gewies A, Castineiras-Vilarino M, Ferch U, Jährling N, Heinrich K, Hoeckendorf U, Przemeck GK, Munding M, Groß O, Schroeder T, Horsch M, Karran EL, Majid A, Antonowicz S, Beckers J, Hrabé de Angelis M, Dodt HU, Peschel C, Förster I, Dyer MJ, Ruland J.

PLoS One. 2013 Nov 21;8(11):e81833. doi: 10.1371/journal.pone.0081833. eCollection 2013.

16.

Ultramicroscopy: light-sheet-based microscopy for imaging centimeter-sized objects with micrometer resolution.

Becker K, Jährling N, Saghafi S, Dodt HU.

Cold Spring Harb Protoc. 2013 Aug 1;2013(8):704-13. doi: 10.1101/pdb.top076539.

PMID:
23906921
17.

Immunostaining, dehydration, and clearing of mouse embryos for ultramicroscopy.

Becker K, Jährling N, Saghafi S, Dodt HU.

Cold Spring Harb Protoc. 2013 Aug 1;2013(8):743-4. doi: 10.1101/pdb.prot076521.

PMID:
23906920
18.

3D-ultramicroscopy utilizing aspheric optics.

Saghafi S, Becker K, Hahn C, Dodt HU.

J Biophotonics. 2014 Jan;7(1-2):117-25. doi: 10.1002/jbio.201300048. Epub 2013 Jul 17.

PMID:
23861302
19.

Dehydration and clearing of whole mouse brains and dissected hippocampi for ultramicroscopy.

Becker K, Jährling N, Saghafi S, Dodt HU.

Cold Spring Harb Protoc. 2013 Jul 1;2013(7):683-4. doi: 10.1101/pdb.prot075820.

PMID:
23818673
20.

Dehydration and clearing of adult Drosophila for ultramicroscopy.

Becker K, Jährling N, Saghafi S, Dodt HU.

Cold Spring Harb Protoc. 2013 Jul 1;2013(7):681-2. doi: 10.1101/pdb.prot075812.

PMID:
23818672
21.

Three-dimensional imaging of solvent-cleared organs using 3DISCO.

Ertürk A, Becker K, Jährling N, Mauch CP, Hojer CD, Egen JG, Hellal F, Bradke F, Sheng M, Dodt HU.

Nat Protoc. 2012 Nov;7(11):1983-95. doi: 10.1038/nprot.2012.119. Epub 2012 Oct 11.

PMID:
23060243
22.

Low dose isoflurane exerts opposing effects on neuronal network excitability in neocortex and hippocampus.

Becker K, Eder M, Ranft A, von Meyer L, Zieglgänsberger W, Kochs E, Dodt HU.

PLoS One. 2012;7(6):e39346. doi: 10.1371/journal.pone.0039346. Epub 2012 Jun 18.

23.

Chemical clearing and dehydration of GFP expressing mouse brains.

Becker K, Jährling N, Saghafi S, Weiler R, Dodt HU.

PLoS One. 2012;7(3):e33916. doi: 10.1371/journal.pone.0033916. Epub 2012 Mar 30. Erratum in: PLoS One. 2012;7(8). doi: 10.1371/annotation/139857f3-5a05-4a23-9bfe-a77aafbce54d.

24.

The Utility of 3D Ultramicroscopy for Evaluating Cellular Therapies After Spinal Cord Injury.

Ghosh M, Jährling N, Henao MC, Dodt HU, Pearse DD.

Top Spinal Cord Inj Rehabil. 2012 Winter;18(1):73-6. doi: 10.1310/sci1801-73.

25.

Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury.

Ertürk A, Mauch CP, Hellal F, Förstner F, Keck T, Becker K, Jährling N, Steffens H, Richter M, Hübener M, Kramer E, Kirchhoff F, Dodt HU, Bradke F.

Nat Med. 2011 Dec 25;18(1):166-71. doi: 10.1038/nm.2600.

PMID:
22198277
26.

Spalt mediates an evolutionarily conserved switch to fibrillar muscle fate in insects.

Schönbauer C, Distler J, Jährling N, Radolf M, Dodt HU, Frasch M, Schnorrer F.

Nature. 2011 Nov 16;479(7373):406-9. doi: 10.1038/nature10559.

PMID:
22094701
27.

Light sheet microscopy of living or cleared specimens.

Keller PJ, Dodt HU.

Curr Opin Neurobiol. 2012 Feb;22(1):138-43. doi: 10.1016/j.conb.2011.08.003. Epub 2011 Sep 16. Review.

PMID:
21925871
28.

Regulation and functions of the lms homeobox gene during development of embryonic lateral transverse muscles and direct flight muscles in Drosophila.

Müller D, Jagla T, Bodart LM, Jährling N, Dodt HU, Jagla K, Frasch M.

PLoS One. 2010 Dec 15;5(12):e14323. doi: 10.1371/journal.pone.0014323.

29.

Image contrast enhancement in confocal ultramicroscopy.

Kalchmair S, Jährling N, Becker K, Dodt HU.

Opt Lett. 2010 Jan 1;35(1):79-81. doi: 10.1364/OL.35.000079.

PMID:
20664679
30.

Image enhancement in ultramicroscopy by improved laser light sheets.

Saghafi S, Becker K, Jährling N, Richter M, Kramer ER, Dodt HU.

J Biophotonics. 2010 Oct;3(10-11):686-95. doi: 10.1002/jbio.201000047.

PMID:
20575105
31.

3D-reconstruction of blood vessels by ultramicroscopy.

Jährling N, Becker K, Dodt HU.

Organogenesis. 2009 Oct;5(4):227-30.

32.

Formalin-induced fluorescence reveals cell shape and morphology in biological tissue samples.

Leischner U, Schierloh A, Zieglgänsberger W, Dodt HU.

PLoS One. 2010 Apr 28;5(4):e10391. doi: 10.1371/journal.pone.0010391.

33.

Three-dimensional reconstruction and segmentation of intact Drosophila by ultramicroscopy.

Jährling N, Becker K, Schönbauer C, Schnorrer F, Dodt HU.

Front Syst Neurosci. 2010 Feb 8;4:1. doi: 10.3389/neuro.06.001.2010. eCollection 2010.

34.

Anaesthesia monitoring by recurrence quantification analysis of EEG data.

Becker K, Schneider G, Eder M, Ranft A, Kochs EF, Zieglgänsberger W, Dodt HU.

PLoS One. 2010 Jan 26;5(1):e8876. doi: 10.1371/journal.pone.0008876.

35.

Resolution of ultramicroscopy and field of view analysis.

Leischner U, Zieglgänsberger W, Dodt HU.

PLoS One. 2009 Jun 3;4(6):e5785. doi: 10.1371/journal.pone.0005785.

36.

Ultramicroscopy: 3D reconstruction of large microscopical specimens.

Becker K, Jährling N, Kramer ER, Schnorrer F, Dodt HU.

J Biophotonics. 2008 Mar;1(1):36-42. doi: 10.1002/jbio.200710011.

PMID:
19343633
37.

Infrared-guided laser stimulation as a tool for elucidating the synaptic site of expression of long-term synaptic plasticity.

Rammes G, Eder M, Zieglgänsberger W, Dodt HU.

Methods Mol Biol. 2007;403:113-22. doi: 10.1007/978-1-59745-529-9_7.

PMID:
18827990
38.

The Rab5 guanylate exchange factor Rin1 regulates endocytosis of the EphA4 receptor in mature excitatory neurons.

Deininger K, Eder M, Kramer ER, Zieglgänsberger W, Dodt HU, Dornmair K, Colicelli J, Klein R.

Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12539-44. doi: 10.1073/pnas.0801174105. Epub 2008 Aug 22.

39.

Infrared-guided laser stimulation of neurons in brain slices.

Dodt HU, Eder M, Schierloh A, Zieglgänsberger W.

CSH Protoc. 2008 Jan 1;2008:pdb.prot4851. doi: 10.1101/pdb.prot4851.

PMID:
21356666
40.

Quality-based registration and reconstruction of optical tomography volumes.

Wein W, Blume M, Leischner U, Dodt HU, Navab N.

Med Image Comput Comput Assist Interv. 2007;10(Pt 2):718-25.

PMID:
18044632
41.

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

Dodt HU, Leischner U, Schierloh A, Jährling N, Mauch CP, Deininger K, Deussing JM, Eder M, Zieglgänsberger W, Becker K.

Nat Methods. 2007 Apr;4(4):331-6. Epub 2007 Mar 25.

PMID:
17384643
42.

Nitrous oxide (N2O) pre- and postsynaptically attenuates NMDA receptor-mediated neurotransmission in the amygdala.

Ranft A, Kurz J, Becker K, Dodt HU, Zieglgänsberger W, Rammes G, Kochs E, Eder M.

Neuropharmacology. 2007 Mar;52(3):716-23. Epub 2006 Nov 22.

PMID:
17123554
43.

The endocannabinoid system controls key epileptogenic circuits in the hippocampus.

Monory K, Massa F, Egertová M, Eder M, Blaudzun H, Westenbroek R, Kelsch W, Jacob W, Marsch R, Ekker M, Long J, Rubenstein JL, Goebbels S, Nave KA, During M, Klugmann M, Wölfel B, Dodt HU, Zieglgänsberger W, Wotjak CT, Mackie K, Elphick MR, Marsicano G, Lutz B.

Neuron. 2006 Aug 17;51(4):455-66.

44.

Cannabinoid receptor type 1 located on presynaptic terminals of principal neurons in the forebrain controls glutamatergic synaptic transmission.

Domenici MR, Azad SC, Marsicano G, Schierloh A, Wotjak CT, Dodt HU, Zieglgänsberger W, Lutz B, Rammes G.

J Neurosci. 2006 May 24;26(21):5794-9. Erratum in: J Neurosci. 2006 Jun 14;26(24):table of contents.

45.

[Endogenous cannabinoid system. Effect on neuronal plasticity and pain memory].

Azad SC, Huge V, Schöps P, Hilf C, Beyer A, Dodt HU, Rammes G, Zieglgänsberger W.

Schmerz. 2005 Nov;19(6):521-7. German.

PMID:
16328555
46.

WIN 55,212-2 decreases the spatial spread of neocortical excitation in vitro.

Becker K, Eder M, Zieglgänsberger W, Dodt HU.

Neuroreport. 2005 Jun 21;16(9):993-6.

PMID:
15931075
47.

The potassium channel modulator flupirtine shifts the frequency-response function of hippocampal synapses to favour LTD in mice.

Azad SC, Eder M, Simon W, Hapfelmeier G, Dodt HU, Zieglgänsberger W, Rammes G.

Neurosci Lett. 2004 Nov 11;370(2-3):186-90.

PMID:
15488320
48.

Shining light on neurons--elucidation of neuronal functions by photostimulation.

Eder M, Zieglgänsberger W, Dodt HU.

Rev Neurosci. 2004;15(3):167-83. Review.

PMID:
15357140
49.

Isoflurane modulates glutamatergic and GABAergic neurotransmission in the amygdala.

Ranft A, Kurz J, Deuringer M, Haseneder R, Dodt HU, Zieglgänsberger W, Kochs E, Eder M, Hapfelmeier G.

Eur J Neurosci. 2004 Sep;20(5):1276-80.

PMID:
15341599
50.

Effects of sensory deprivation on columnar organization of neuronal circuits in the rat barrel cortex.

Schierloh A, Eder M, Zieglgänsberger W, Dodt HU.

Eur J Neurosci. 2004 Aug;20(4):1118-24.

PMID:
15305882

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