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Flax rust infection transcriptomics reveals a transcriptional profile that may be indicative for rust Avr genes.

Wu W, Nemri A, Blackman LM, Catanzariti AM, Sperschneider J, Lawrence GJ, Dodds PN, Jones DA, Hardham AR.

PLoS One. 2019 Dec 12;14(12):e0226106. doi: 10.1371/journal.pone.0226106. eCollection 2019.


Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation.

Li F, Upadhyaya NM, Sperschneider J, Matny O, Nguyen-Phuc H, Mago R, Raley C, Miller ME, Silverstein KAT, Henningsen E, Hirsch CD, Visser B, Pretorius ZA, Steffenson BJ, Schwessinger B, Dodds PN, Figueroa M.

Nat Commun. 2019 Nov 7;10(1):5068. doi: 10.1038/s41467-019-12927-7.


NAD+ cleavage activity by animal and plant TIR domains in cell death pathways.

Horsefield S, Burdett H, Zhang X, Manik MK, Shi Y, Chen J, Qi T, Gilley J, Lai JS, Rank MX, Casey LW, Gu W, Ericsson DJ, Foley G, Hughes RO, Bosanac T, von Itzstein M, Rathjen JP, Nanson JD, Boden M, Dry IB, Williams SJ, Staskawicz BJ, Coleman MP, Ve T, Dodds PN, Kobe B.

Science. 2019 Aug 23;365(6455):793-799. doi: 10.1126/science.aax1911.


The Plant "Resistosome": Structural Insights into Immune Signaling.

Burdett H, Bentham AR, Williams SJ, Dodds PN, Anderson PA, Banfield MJ, Kobe B.

Cell Host Microbe. 2019 Aug 14;26(2):193-201. doi: 10.1016/j.chom.2019.07.020. Review.


Structural and functional insights into the modulation of the activity of a flax cytokinin oxidase by flax rust effector AvrL567-A.

Wan L, Koeck M, Williams SJ, Ashton AR, Lawrence GJ, Sakakibara H, Kojima M, Böttcher C, Ericsson DJ, Hardham AR, Jones DA, Ellis JG, Kobe B, Dodds PN.

Mol Plant Pathol. 2019 Feb;20(2):211-222. doi: 10.1111/mpp.12749. Epub 2018 Nov 15.


Plant NLR Origins Traced Back to Green Algae.

Ortiz D, Dodds PN.

Trends Plant Sci. 2018 Aug;23(8):651-654. doi: 10.1016/j.tplants.2018.05.009. Epub 2018 Jun 7.


Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0.

Sperschneider J, Dodds PN, Gardiner DM, Singh KB, Taylor JM.

Mol Plant Pathol. 2018 Sep;19(9):2094-2110. doi: 10.1111/mpp.12682. Epub 2018 May 11.


A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity.

Schwessinger B, Sperschneider J, Cuddy WS, Garnica DP, Miller ME, Taylor JM, Dodds PN, Figueroa M, Park RF, Rathjen JP.

mBio. 2018 Feb 20;9(1). pii: e02275-17. doi: 10.1128/mBio.02275-17.


De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust.

Miller ME, Zhang Y, Omidvar V, Sperschneider J, Schwessinger B, Raley C, Palmer JM, Garnica D, Upadhyaya N, Rathjen J, Taylor JM, Park RF, Dodds PN, Hirsch CD, Kianian SF, Figueroa M.

mBio. 2018 Feb 20;9(1). pii: e01650-17. doi: 10.1128/mBio.01650-17.


Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat.

Chen J, Upadhyaya NM, Ortiz D, Sperschneider J, Li F, Bouton C, Breen S, Dong C, Xu B, Zhang X, Mago R, Newell K, Xia X, Bernoux M, Taylor JM, Steffenson B, Jin Y, Zhang P, Kanyuka K, Figueroa M, Ellis JG, Park RF, Dodds PN.

Science. 2017 Dec 22;358(6370):1607-1610. doi: 10.1126/science.aao4810.


ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning.

Sperschneider J, Dodds PN, Singh KB, Taylor JM.

New Phytol. 2018 Mar;217(4):1764-1778. doi: 10.1111/nph.14946. Epub 2017 Dec 15.


Dancing with the Stars: An Asterid NLR Family.

Rathjen JP, Dodds PN.

Trends Plant Sci. 2017 Dec;22(12):1003-1005. doi: 10.1016/j.tplants.2017.09.018. Epub 2017 Oct 10.


Computational Methods for Predicting Effectors in Rust Pathogens.

Sperschneider J, Dodds PN, Taylor JM, Duplessis S.

Methods Mol Biol. 2017;1659:73-83. doi: 10.1007/978-1-4939-7249-4_7.


Crystal structure of the Melampsora lini effector AvrP reveals insights into a possible nuclear function and recognition by the flax disease resistance protein P.

Zhang X, Farah N, Rolston L, Ericsson DJ, Catanzariti AM, Bernoux M, Ve T, Bendak K, Chen C, Mackay JP, Lawrence GJ, Hardham A, Ellis JG, Williams SJ, Dodds PN, Jones DA, Kobe B.

Mol Plant Pathol. 2018 May;19(5):1196-1209. doi: 10.1111/mpp.12597. Epub 2017 Nov 16.


An overview of genetic rust resistance: From broad to specific mechanisms.

Periyannan S, Milne RJ, Figueroa M, Lagudah ES, Dodds PN.

PLoS Pathog. 2017 Jul 13;13(7):e1006380. doi: 10.1371/journal.ppat.1006380. eCollection 2017 Jul. Review. No abstract available.


What Do We Know About NOD-Like Receptors in Plant Immunity?

Zhang X, Dodds PN, Bernoux M.

Annu Rev Phytopathol. 2017 Aug 4;55:205-229. doi: 10.1146/annurev-phyto-080516-035250. Epub 2017 May 22. Review.


LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell.

Sperschneider J, Catanzariti AM, DeBoer K, Petre B, Gardiner DM, Singh KB, Dodds PN, Taylor JM.

Sci Rep. 2017 Mar 16;7:44598. doi: 10.1038/srep44598.


Multiple functional self-association interfaces in plant TIR domains.

Zhang X, Bernoux M, Bentham AR, Newman TE, Ve T, Casey LW, Raaymakers TM, Hu J, Croll TI, Schreiber KJ, Staskawicz BJ, Anderson PA, Sohn KH, Williams SJ, Dodds PN, Kobe B.

Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):E2046-E2052. doi: 10.1073/pnas.1621248114. Epub 2017 Feb 3.


Starving the enemy.

Dodds PN, Lagudah ES.

Science. 2016 Dec 16;354(6318):1377-1378. No abstract available.


The CC domain structure from the wheat stem rust resistance protein Sr33 challenges paradigms for dimerization in plant NLR proteins.

Casey LW, Lavrencic P, Bentham AR, Cesari S, Ericsson DJ, Croll T, Turk D, Anderson PA, Mark AE, Dodds PN, Mobli M, Kobe B, Williams SJ.

Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):12856-12861. doi: 10.1073/pnas.1609922113. Epub 2016 Oct 17.


Cytosolic activation of cell death and stem rust resistance by cereal MLA-family CC-NLR proteins.

Cesari S, Moore J, Chen C, Webb D, Periyannan S, Mago R, Bernoux M, Lagudah ES, Dodds PN.

Proc Natl Acad Sci U S A. 2016 Sep 6;113(36):10204-9. doi: 10.1073/pnas.1605483113. Epub 2016 Aug 23.


Genome analysis and avirulence gene cloning using a high-density RADseq linkage map of the flax rust fungus, Melampsora lini.

Anderson C, Khan MA, Catanzariti AM, Jack CA, Nemri A, Lawrence GJ, Upadhyaya NM, Hardham AR, Ellis JG, Dodds PN, Jones DA.

BMC Genomics. 2016 Aug 22;17:667. doi: 10.1186/s12864-016-3011-9.


Changing the Game: Using Integrative Genomics to Probe Virulence Mechanisms of the Stem Rust Pathogen Puccinia graminis f. sp. tritici.

Figueroa M, Upadhyaya NM, Sperschneider J, Park RF, Szabo LJ, Steffenson B, Ellis JG, Dodds PN.

Front Plant Sci. 2016 Feb 24;7:205. doi: 10.3389/fpls.2016.00205. eCollection 2016. Review.


Production of small cysteine-rich effector proteins in Escherichia coli for structural and functional studies.

Zhang X, Nguyen N, Breen S, Outram MA, Dodds PN, Kobe B, Solomon PS, Williams SJ.

Mol Plant Pathol. 2017 Jan;18(1):141-151. doi: 10.1111/mpp.12385. Epub 2016 Apr 12.


Epidemiological and Evolutionary Outcomes in Gene-for-Gene and Matching Allele Models.

Thrall PH, Barrett LG, Dodds PN, Burdon JJ.

Front Plant Sci. 2016 Jan 7;6:1084. doi: 10.3389/fpls.2015.01084. eCollection 2015.


Comparative Analysis of the Flax Immune Receptors L6 and L7 Suggests an Equilibrium-Based Switch Activation Model.

Bernoux M, Burdett H, Williams SJ, Zhang X, Chen C, Newell K, Lawrence GJ, Kobe B, Ellis JG, Anderson PA, Dodds PN.

Plant Cell. 2016 Jan;28(1):146-59. doi: 10.1105/tpc.15.00303. Epub 2016 Jan 7.


EffectorP: predicting fungal effector proteins from secretomes using machine learning.

Sperschneider J, Gardiner DM, Dodds PN, Tini F, Covarelli L, Singh KB, Manners JM, Taylor JM.

New Phytol. 2016 Apr;210(2):743-61. doi: 10.1111/nph.13794. Epub 2015 Dec 17.


Advances and challenges in computational prediction of effectors from plant pathogenic fungi.

Sperschneider J, Dodds PN, Gardiner DM, Manners JM, Singh KB, Taylor JM.

PLoS Pathog. 2015 May 28;11(5):e1004806. doi: 10.1371/journal.ppat.1004806. eCollection 2015 May. No abstract available.


Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes.

Upadhyaya NM, Garnica DP, Karaoglu H, Sperschneider J, Nemri A, Xu B, Mago R, Cuomo CA, Rathjen JP, Park RF, Ellis JG, Dodds PN.

Front Plant Sci. 2015 Jan 8;5:759. doi: 10.3389/fpls.2014.00759. eCollection 2014.


The wheat Sr50 gene reveals rich diversity at a cereal disease resistance locus.

Mago R, Zhang P, Vautrin S, Šimková H, Bansal U, Luo MC, Rouse M, Karaoglu H, Periyannan S, Kolmer J, Jin Y, Ayliffe MA, Bariana H, Park RF, McIntosh R, Doležel J, Bergès H, Spielmeyer W, Lagudah ES, Ellis JG, Dodds PN.

Nat Plants. 2015 Nov 30;1:15186. doi: 10.1038/nplants.2015.186.


A novel conserved mechanism for plant NLR protein pairs: the "integrated decoy" hypothesis.

Cesari S, Bernoux M, Moncuquet P, Kroj T, Dodds PN.

Front Plant Sci. 2014 Nov 25;5:606. doi: 10.3389/fpls.2014.00606. eCollection 2014.


The past, present and future of breeding rust resistant wheat.

Ellis JG, Lagudah ES, Spielmeyer W, Dodds PN.

Front Plant Sci. 2014 Nov 24;5:641. doi: 10.3389/fpls.2014.00641. eCollection 2014. Review.


Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors.

Sperschneider J, Ying H, Dodds PN, Gardiner DM, Upadhyaya NM, Singh KB, Manners JM, Taylor JM.

Front Plant Sci. 2014 Sep 1;5:372. doi: 10.3389/fpls.2014.00372. eCollection 2014.


The ins and outs of rust haustoria.

Garnica DP, Nemri A, Upadhyaya NM, Rathjen JP, Dodds PN.

PLoS Pathog. 2014 Sep 11;10(9):e1004329. doi: 10.1371/journal.ppat.1004329. eCollection 2014 Sep. No abstract available.


Structural basis for assembly and function of a heterodimeric plant immune receptor.

Williams SJ, Sohn KH, Wan L, Bernoux M, Sarris PF, Segonzac C, Ve T, Ma Y, Saucet SB, Ericsson DJ, Casey LW, Lonhienne T, Winzor DJ, Zhang X, Coerdt A, Parker JE, Dodds PN, Kobe B, Jones JD.

Science. 2014 Apr 18;344(6181):299-303. doi: 10.1126/science.1247357.


The genome sequence and effector complement of the flax rust pathogen Melampsora lini.

Nemri A, Saunders DG, Anderson C, Upadhyaya NM, Win J, Lawrence GJ, Jones DA, Kamoun S, Ellis JG, Dodds PN.

Front Plant Sci. 2014 Mar 24;5:98. doi: 10.3389/fpls.2014.00098. eCollection 2014.


A bacterial type III secretion-based delivery system for functional assays of fungal effectors in cereals.

Upadhyaya NM, Ellis JG, Dodds PN.

Methods Mol Biol. 2014;1127:277-90. doi: 10.1007/978-1-62703-986-4_21.


Genomic analysis of Xanthomonas translucens pathogenic on wheat and barley reveals cross-kingdom gene transfer events and diverse protein delivery systems.

Gardiner DM, Upadhyaya NM, Stiller J, Ellis JG, Dodds PN, Kazan K, Manners JM.

PLoS One. 2014 Jan 9;9(1):e84995. doi: 10.1371/journal.pone.0084995. eCollection 2014.


Crystallization and preliminary X-ray diffraction analyses of the TIR domains of three TIR-NB-LRR proteins that are involved in disease resistance in Arabidopsis thaliana.

Wan L, Zhang X, Williams SJ, Ve T, Bernoux M, Sohn KH, Jones JD, Dodds PN, Kobe B.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Nov;69(Pt 11):1275-80. doi: 10.1107/S1744309113026614. Epub 2013 Oct 30.


A bacterial type III secretion assay for delivery of fungal effector proteins into wheat.

Upadhyaya NM, Mago R, Staskawicz BJ, Ayliffe MA, Ellis JG, Dodds PN.

Mol Plant Microbe Interact. 2014 Mar;27(3):255-64. doi: 10.1094/MPMI-07-13-0187-FI.


Structures of the flax-rust effector AvrM reveal insights into the molecular basis of plant-cell entry and effector-triggered immunity.

Ve T, Williams SJ, Catanzariti AM, Rafiqi M, Rahman M, Ellis JG, Hardham AR, Jones DA, Anderson PA, Dodds PN, Kobe B.

Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17594-9. doi: 10.1073/pnas.1307614110. Epub 2013 Oct 7.


Crystallization and preliminary X-ray diffraction analysis of the flax cytokinin oxidase LuCKX1.1.

Wan L, Williams SJ, Zhang X, Ericsson DJ, Koeck M, Dodds PN, Ellis JG, Kobe B.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Oct;69(Pt 10):1094-6. doi: 10.1107/S1744309113023142. Epub 2013 Sep 28.


Strategies for Wheat Stripe Rust Pathogenicity Identified by Transcriptome Sequencing.

Garnica DP, Upadhyaya NM, Dodds PN, Rathjen JP.

PLoS One. 2013 Jun 26;8(6):e67150. doi: 10.1371/journal.pone.0067150. Print 2013.


Intramolecular interaction influences binding of the Flax L5 and L6 resistance proteins to their AvrL567 ligands.

Ravensdale M, Bernoux M, Ve T, Kobe B, Thrall PH, Ellis JG, Dodds PN.

PLoS Pathog. 2012;8(11):e1003004. doi: 10.1371/journal.ppat.1003004. Epub 2012 Nov 29.


Challenges and progress towards understanding the role of effectors in plant-fungal interactions.

Rafiqi M, Ellis JG, Ludowici VA, Hardham AR, Dodds PN.

Curr Opin Plant Biol. 2012 Aug;15(4):477-82. doi: 10.1016/j.pbi.2012.05.003. Epub 2012 Jun 1. Review.


Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation.

Thrall PH, Laine AL, Ravensdale M, Nemri A, Dodds PN, Barrett LG, Burdon JJ.

Ecol Lett. 2012 May;15(5):425-35. doi: 10.1111/j.1461-0248.2012.01749.x. Epub 2012 Feb 28.


Crystallization and X-ray diffraction analysis of the C-terminal domain of the flax rust effector protein AvrM.

Ve T, Williams SJ, Stamp A, Valkov E, Dodds PN, Anderson PA, Kobe B.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Dec 1;67(Pt 12):1603-7. doi: 10.1107/S1744309111037675. Epub 2011 Nov 26.


N-terminal motifs in some plant disease resistance proteins function in membrane attachment and contribute to disease resistance.

Takemoto D, Rafiqi M, Hurley U, Lawrence GJ, Bernoux M, Hardham AR, Ellis JG, Dodds PN, Jones DA.

Mol Plant Microbe Interact. 2012 Mar;25(3):379-92. doi: 10.1094/MPMI-11-10-0272.


Showdown at the RXLR motif: Serious differences of opinion in how effector proteins from filamentous eukaryotic pathogens enter plant cells.

Ellis JG, Dodds PN.

Proc Natl Acad Sci U S A. 2011 Aug 30;108(35):14381-2. doi: 10.1073/pnas.1111668108. Epub 2011 Aug 19. No abstract available.


The role of effectors of biotrophic and hemibiotrophic fungi in infection.

Koeck M, Hardham AR, Dodds PN.

Cell Microbiol. 2011 Dec;13(12):1849-57. doi: 10.1111/j.1462-5822.2011.01665.x. Epub 2011 Sep 14. Review.

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