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Items: 25

1.

Aquatic adaptation and depleted diversity: a deep dive into the genomes of the sea otter and giant otter.

Beichman AC, Koepfli KP, Li G, Murphy W, Dobrynin P, Kilver S, Tinker MT, Murray MJ, Johnson J, Lindblad-Toh K, Karlsson EK, Lohmueller KE, Wayne RK.

Mol Biol Evol. 2019 Jun 18. pii: msz101. doi: 10.1093/molbev/msz101. [Epub ahead of print]

PMID:
31212313
2.

Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations.

Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Pinto PV, Ferrand N, Maldonado JE, Ferrie GM, Chemnick L, Ryder OA, Johnson WE, Comizzoli P, O'Brien SJ, Pukazhenthi BS.

G3 (Bethesda). 2019 Jun 5;9(6):1785-1793. doi: 10.1534/g3.119.400084.

3.

Genome-wide sequence analyses of ethnic populations across Russia.

Zhernakova DV, Brukhin V, Malov S, Oleksyk TK, Koepfli KP, Zhuk A, Dobrynin P, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Gorbunova A, Chernyaeva E, Shevchenko A, Kolchanova S, Komissarov A, Simonov S, Antonik A, Logachev A, Polev DE, Pavlova OA, Glotov AS, Ulantsev V, Noskova E, Davydova TK, Sivtseva TM, Limborska S, Balanovsky O, Osakovsky V, Novozhilov A, Puzyrev V, O'Brien SJ.

Genomics. 2019 Mar 19. pii: S0888-7543(18)30741-9. doi: 10.1016/j.ygeno.2019.03.007. [Epub ahead of print]

PMID:
30902755
4.

Analytical "bake-off" of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis.

Zhernakova DV, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Dobrynin P, Yurchenko AA, Shimansky V, Shcherbakova IV, Glotov AS, Valle DL, Tang M, Shin E, Schwarz KB, O'Brien SJ.

PLoS One. 2018 Jul 11;13(7):e0200423. doi: 10.1371/journal.pone.0200423. eCollection 2018.

5.

Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola.

Grigorev K, Kliver S, Dobrynin P, Komissarov A, Wolfsberger W, Krasheninnikova K, Afanador-Hernández YM, Brandt AL, Paulino LA, Carreras R, Rodríguez LE, Núñez A, Brandt JR, Silva F, Hernández-Martich JD, Majeske AJ, Antunes A, Roca AL, O'Brien SJ, Martínez-Cruzado JC, Oleksyk TK.

Gigascience. 2018 Jun 1;7(6). doi: 10.1093/gigascience/giy025.

6.

Nicotiana glauca whole-genome investigation for cT-DNA study.

Khafizova G, Dobrynin P, Polev D, Matveeva T.

BMC Res Notes. 2018 Jan 12;11(1):18. doi: 10.1186/s13104-018-3127-x.

7.

Robust forensic matching of confiscated horns to individual poached African rhinoceros.

Harper C, Ludwig A, Clarke A, Makgopela K, Yurchenko A, Guthrie A, Dobrynin P, Tamazian G, Emslie R, van Heerden M, Hofmeyr M, Potter R, Roets J, Beytell P, Otiende M, Kariuki L, du Toit R, Anderson N, Okori J, Antonik A, Koepfli KP, Thompson P, O'Brien SJ.

Curr Biol. 2018 Jan 8;28(1):R13-R14. doi: 10.1016/j.cub.2017.11.005.

8.

Developmental dynamics of the epigenome: A longitudinal study of three toddlers.

Naumova OY, Dozier M, Dobrynin PV, Grigorev K, Wallin A, Jeltova I, Lee M, Raefski A, Grigorenko EL.

Neurotoxicol Teratol. 2018 Mar - Apr;66:125-131. doi: 10.1016/j.ntt.2017.12.006. Epub 2017 Dec 13.

PMID:
29247702
9.

Conservation Genetics of the Cheetah: Lessons Learned and New Opportunities.

O'Brien SJ, Johnson WE, Driscoll CA, Dobrynin P, Marker L.

J Hered. 2017 Sep 1;108(6):671-677. doi: 10.1093/jhered/esx047. Review.

10.

PGD: a pangolin genome hub for the research community.

Tan TK, Tan KY, Hari R, Mohamed Yusoff A, Wong GJ, Siow CC, Mutha NV, Rayko M, Komissarov A, Dobrynin P, Krasheninnikova K, Tamazian G, Paterson IC, Warren WC, Johnson WE, O'Brien SJ, Choo SW.

Database (Oxford). 2016 Sep 11;2016. pii: baw063. doi: 10.1093/database/baw063. Print 2016.

11.

Chromosomer: a reference-based genome arrangement tool for producing draft chromosome sequences.

Tamazian G, Dobrynin P, Krasheninnikova K, Komissarov A, Koepfli KP, O'Brien SJ.

Gigascience. 2016 Aug 22;5(1):38. doi: 10.1186/s13742-016-0141-6.

12.

Pangolin genomes and the evolution of mammalian scales and immunity.

Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko AA, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli KP, Minx P, Krasheninnikova K, Kotze A, Dalton DL, Vermaak E, Paterson IC, Dobrynin P, Sitam FT, Rovie-Ryan JJ, Johnson WE, Yusoff AM, Luo SJ, Karuppannan KV, Fang G, Zheng D, Gerstein MB, Lipovich L, O'Brien SJ, Wong GJ.

Genome Res. 2016 Oct;26(10):1312-1322. Epub 2016 Aug 10.

13.

Mitogenomic sequences support a north-south subspecies subdivision within Solenodon paradoxus.

Brandt AL, Grigorev K, Afanador-Hernández YM, Paulino LA, Murphy WJ, Núñez A, Komissarov A, Brandt JR, Dobrynin P, Hernández-Martich JD, María R, O'Brien SJ, Rodríguez LE, Martínez-Cruzado JC, Oleksyk TK, Roca AL.

Mitochondrial DNA A DNA Mapp Seq Anal. 2017 Sep;28(5):662-670. doi: 10.3109/24701394.2016.1167891. Epub 2016 Apr 20.

PMID:
27159724
14.

Genome Sequencing and Comparative Analysis of Saccharomyces cerevisiae Strains of the Peterhof Genetic Collection.

Drozdova PB, Tarasov OV, Matveenko AG, Radchenko EA, Sopova JV, Polev DE, Inge-Vechtomov SG, Dobrynin PV.

PLoS One. 2016 May 6;11(5):e0154722. doi: 10.1371/journal.pone.0154722. eCollection 2016.

15.

Response to Comment by Faurby, Werdelin and Svenning.

O'Brien SJ, Koepfli KP, Eizirik E, Johnson W, Driscoll C, Antunes A, Schmidt-Kuntzel A, Marker L, Dobrynin P.

Genome Biol. 2016 May 5;17:90. doi: 10.1186/s13059-016-0942-z. No abstract available.

16.

Epigenetic Patterns Modulate the Connection Between Developmental Dynamics of Parenting and Offspring Psychosocial Adjustment.

Naumova OY, Hein S, Suderman M, Barbot B, Lee M, Raefski A, Dobrynin PV, Brown PJ, Szyf M, Luthar SS, Grigorenko EL.

Child Dev. 2016 Jan-Feb;87(1):98-110. doi: 10.1111/cdev.12485.

17.

Genomic legacy of the African cheetah, Acinonyx jubatus.

Dobrynin P, Liu S, Tamazian G, Xiong Z, Yurchenko AA, Krasheninnikova K, Kliver S, Schmidt-Küntzel A, Koepfli KP, Johnson W, Kuderna LF, García-Pérez R, Manuel Md, Godinez R, Komissarov A, Makunin A, Brukhin V, Qiu W, Zhou L, Li F, Yi J, Driscoll C, Antunes A, Oleksyk TK, Eizirik E, Perelman P, Roelke M, Wildt D, Diekhans M, Marques-Bonet T, Marker L, Bhak J, Wang J, Zhang G, O'Brien SJ.

Genome Biol. 2015 Dec 10;16:277. doi: 10.1186/s13059-015-0837-4.

18.

Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species.

Koepfli KP, Pollinger J, Godinho R, Robinson J, Lea A, Hendricks S, Schweizer RM, Thalmann O, Silva P, Fan Z, Yurchenko AA, Dobrynin P, Makunin A, Cahill JA, Shapiro B, Álvares F, Brito JC, Geffen E, Leonard JA, Helgen KM, Johnson WE, O'Brien SJ, Van Valkenburgh B, Wayne RK.

Curr Biol. 2015 Aug 17;25(16):2158-65. doi: 10.1016/j.cub.2015.06.060. Epub 2015 Jul 30.

19.

GWATCH: a web platform for automated gene association discovery analysis.

Svitin A, Malov S, Cherkasov N, Geerts P, Rotkevich M, Dobrynin P, Shevchenko A, Guan L, Troyer J, Hendrickson S, Dilks HH, Oleksyk TK, Donfield S, Gomperts E, Jabs DA, Sezgin E, Van Natta M, Harrigan PR, Brumme ZL, O'Brien SJ.

Gigascience. 2014 Nov 5;3:18. doi: 10.1186/2047-217X-3-18. eCollection 2014.

20.

Annotated features of domestic cat - Felis catus genome.

Tamazian G, Simonov S, Dobrynin P, Makunin A, Logachev A, Komissarov A, Shevchenko A, Brukhin V, Cherkasov N, Svitin A, Koepfli KP, Pontius J, Driscoll CA, Blackistone K, Barr C, Goldman D, Antunes A, Quilez J, Lorente-Galdos B, Alkan C, Marques-Bonet T, Menotti-Raymond M, David VA, Narfström K, O'Brien SJ.

Gigascience. 2014 Aug 5;3:13. doi: 10.1186/2047-217X-3-13. eCollection 2014.

21.

Genome-wide Mycobacterium tuberculosis variation (GMTV) database: a new tool for integrating sequence variations and epidemiology.

Chernyaeva EN, Shulgina MV, Rotkevich MS, Dobrynin PV, Simonov SA, Shitikov EA, Ischenko DS, Karpova IY, Kostryukova ES, Ilina EN, Govorun VM, Zhuravlev VY, Manicheva OA, Yablonsky PK, Isaeva YD, Nosova EY, Mokrousov IV, Vyazovaya AA, Narvskaya OV, Lapidus AL, O'Brien SJ.

BMC Genomics. 2014 Apr 25;15:308. doi: 10.1186/1471-2164-15-308.

22.

The novelty of human cancer/testis antigen encoding genes in evolution.

Dobrynin P, Matyunina E, Malov SV, Kozlov AP.

Int J Genomics. 2013;2013:105108. doi: 10.1155/2013/105108. Epub 2013 Apr 18.

23.

Molecular genetic analysis of Mycobacterium tuberculosis strains spread in different patient groups in St. Petersburg, Russia.

Chernyaeva E, Dobrynin P, Pestova N, Matveeva N, Zhemkov V, Kozlov A.

Eur J Clin Microbiol Infect Dis. 2012 Aug;31(8):1753-7. doi: 10.1007/s10096-011-1497-2. Epub 2011 Dec 8.

PMID:
22160887
24.

[Organization of chemotherapy under ambulatory conditions in the antituberculosis institutions of the Cheliabinsk district].

Dobrynin PP, Nesterovskiĭ IaI.

Zdravookhr Ross Fed. 1974 Oct;0(10):24-7. Russian. No abstract available.

PMID:
4497406
25.

[Ways and methods of increasing the efficacy of treatment in patients with pulmonary tuberculosis].

Dobrynin PP, Nesterovskiĭ IaI.

Probl Tuberk. 1974;(9):12-5. Russian. No abstract available.

PMID:
4411513

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