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Expanding the CRISPR Toolbox with ErCas12a in Zebrafish and Human Cells.

Wierson WA, Simone BW, WareJoncas Z, Mann C, Welker JM, Kar B, Emch MJ, Friedberg I, Gendron WAC, Barry MA, Clark KJ, Dobbs DL, McGrail MA, Ekker SC, Essner JJ.

CRISPR J. 2019 Nov 19. doi: 10.1089/crispr.2019.0026. [Epub ahead of print]


The Use of Mobility Devices and Personal Assistance: A Joint Modeling Approach.

Meng H, Peterson LJ, Feng L, Dobbs D, Hyer K.

Gerontol Geriatr Med. 2019 Oct 25;5:2333721419885291. doi: 10.1177/2333721419885291. eCollection 2019 Jan-Dec.


Discussing End-of-Life Care Preferences With Family: Role of Race and Ethnicity.

Peterson LJ, Hyer K, Meng H, Dobbs D, Gamaldo A, O'Neil K.

Res Aging. 2019 Oct;41(9):823-844. doi: 10.1177/0164027519858716. Epub 2019 Jun 23.


Who gets certified by the American Board of Professional Psychology and why: A diversity survey.

Frost JC, Molinari V, Dobbs D, Edgar VB, Jones KS, Pietz C, Badana ANS.

J Clin Psychol. 2019 Oct;75(10):1820-1837. doi: 10.1002/jclp.22818. Epub 2019 Jun 3.


The Gene Sculpt Suite: a set of tools for genome editing.

Mann CM, Martínez-Gálvez G, Welker JM, Wierson WA, Ata H, Almeida MP, Clark KJ, Essner JJ, McGrail M, Ekker SC, Dobbs D.

Nucleic Acids Res. 2019 Jul 2;47(W1):W175-W182. doi: 10.1093/nar/gkz405.


Using Deficiency Data to Measure Quality in Assisted Living Communities: A Florida Statewide Study.

June JW, Meng H, Dobbs D, Hyer K.

J Aging Soc Policy. 2019 Jan 16:1-16. doi: 10.1080/08959420.2018.1563471. [Epub ahead of print]


Partner-specific prediction of RNA-binding residues in proteins: A critical assessment.

Jung Y, El-Manzalawy Y, Dobbs D, Honavar VG.

Proteins. 2019 Mar;87(3):198-211. doi: 10.1002/prot.25639. Epub 2018 Dec 30.


Robust activation of microhomology-mediated end joining for precision gene editing applications.

Ata H, Ekstrom TL, Martínez-Gálvez G, Mann CM, Dvornikov AV, Schaefbauer KJ, Ma AC, Dobbs D, Clark KJ, Ekker SC.

PLoS Genet. 2018 Sep 12;14(9):e1007652. doi: 10.1371/journal.pgen.1007652. eCollection 2018 Sep.


Factors associated with willingness to enter long-term care facilities among older adults in Chengdu, China.

Huang Z, Liu Q, Meng H, Liu D, Dobbs D, Hyer K, Conner KO.

PLoS One. 2018 Aug 16;13(8):e0202225. doi: 10.1371/journal.pone.0202225. eCollection 2018.


The Association Between Assisted Living Direct Care Worker End-of-Life Training and Hospice Use Patterns.

Dobbs D, Kaufman S, Meng H.

Gerontol Geriatr Med. 2018 Mar 27;4:2333721418765522. doi: 10.1177/2333721418765522. eCollection 2018 Jan-Dec.


Certified nursing assistants' perspectives of the CARES® activities of daily living dementia care program.

Dobbs D, Hobday J, Roker R, Kaas MJ, Molinari V.

Appl Nurs Res. 2018 Feb;39:244-248. doi: 10.1016/j.apnr.2017.11.016. Epub 2017 Nov 7.


Sharing End-of-Life Care Preferences with Family Members: Who Has the Discussion and Who Does Not.

Peterson LJ, Dobbs D, Meng H, Gamaldo A, O'Neil K, Hyer K.

J Palliat Med. 2018 Apr;21(4):463-472. doi: 10.1089/jpm.2017.0357. Epub 2017 Nov 30.


Identification of a homogenous structural basis for oligomerization by retroviral Rev-like proteins.

Umunnakwe CN, Dorman KS, Dobbs D, Carpenter S.

Retrovirology. 2017 Aug 22;14(1):40. doi: 10.1186/s12977-017-0366-1.


Impact of serious mental illness online training for certified nursing assistants in long term care.

Molinari V, Hobday JV, Roker R, Kunik ME, Kane R, Kaas MJ, Mehrotra C, Williams CL, Robbins JC, Dobbs D.

Gerontol Geriatr Educ. 2017 Oct-Dec;38(4):359-374. doi: 10.1080/02701960.2016.1188811. Epub 2016 Sep 22.


Cross-sectional study of factors associated with community health centre use in a recently urbanised community in Chengdu, China.

Liu D, Meng H, Dobbs D, Conner KO, Hyer K, Li N, Ren X, Gao B.

BMJ Open. 2017 Jun 8;7(6):e014510. doi: 10.1136/bmjopen-2016-014510.


Computational Prediction of RNA-Protein Interactions.

Mann CM, Muppirala UK, Dobbs D.

Methods Mol Biol. 2017;1543:169-185. doi: 10.1007/978-1-4939-6716-2_8.


In Silico Prediction of Linear B-Cell Epitopes on Proteins.

El-Manzalawy Y, Dobbs D, Honavar VG.

Methods Mol Biol. 2017;1484:255-264. doi: 10.1007/978-1-4939-6406-2_17.


Sequence-Based Prediction of RNA-Binding Residues in Proteins.

Walia RR, El-Manzalawy Y, Honavar VG, Dobbs D.

Methods Mol Biol. 2017;1484:205-235. doi: 10.1007/978-1-4939-6406-2_15.


Gender Differences in Mobility Device Use Among U.S. Older Adults.

Peterson LJ, Meng H, Dobbs D, Hyer K.

J Gerontol B Psychol Sci Soc Sci. 2017 Sep 1;72(5):827-835. doi: 10.1093/geronb/gbw081.


A Plasmodium-like virulence effector of the soybean cyst nematode suppresses plant innate immunity.

Noon JB, Qi M, Sill DN, Muppirala U, Eves-van den Akker S, Maier TR, Dobbs D, Mitchum MG, Hewezi T, Baum TJ.

New Phytol. 2016 Oct;212(2):444-60. doi: 10.1111/nph.14047. Epub 2016 Jun 6.


Template-based protein-protein docking exploiting pairwise interfacial residue restraints.

Xue LC, Rodrigues JPGLM, Dobbs D, Honavar V, Bonvin AMJJ.

Brief Bioinform. 2017 May 1;18(3):458-466. doi: 10.1093/bib/bbw027.


Computational prediction of protein interfaces: A review of data driven methods.

Xue LC, Dobbs D, Bonvin AM, Honavar V.

FEBS Lett. 2015 Nov 30;589(23):3516-26. doi: 10.1016/j.febslet.2015.10.003. Epub 2015 Oct 13. Review.


Awareness and completion of advance directives in older Korean-American adults.

Dobbs D, Park NS, Jang Y, Meng H.

J Am Geriatr Soc. 2015 Mar;63(3):565-70. doi: 10.1111/jgs.13309. Epub 2015 Mar 2.


Erratum. Assessing approaches and barriers to reduce antipsychotic drug use in Florida nursing homes.

Ellis ML, Molinari V, Dobbs D, Smith K, Hyer K.

Aging Ment Health. 2015;19(6):i. doi: 10.1080/13607863.2014.998484. No abstract available.


Aging in community: mobilizing a new paradigm of older adults as a core social resource.

Black K, Dobbs D, Young TL.

J Appl Gerontol. 2015 Mar;34(2):219-43. doi: 10.1177/0733464812463984. Epub 2012 Nov 20.


Computational modeling suggests dimerization of equine infectious anemia virus Rev is required for RNA binding.

Umunnakwe CN, Loyd H, Cornick K, Chavez JR, Dobbs D, Carpenter S.

Retrovirology. 2014 Dec 23;11:115. doi: 10.1186/s12977-014-0115-7.


G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient deprivation.

Andorf CM, Kopylov M, Dobbs D, Koch KE, Stroupe ME, Lawrence CJ, Bass HW.

J Genet Genomics. 2014 Dec 20;41(12):627-47. doi: 10.1016/j.jgg.2014.10.004. Epub 2014 Nov 4.


Assessing approaches and barriers to reduce antipsychotic drug use in Florida nursing homes.

Ellis ML, Molinari V, Dobbs D, Smith K, Hyer K.

Aging Ment Health. 2015;19(6):507-16. doi: 10.1080/13607863.2014.952710. Epub 2014 Aug 28. Erratum in: Aging Ment Health. 2015;19(6):i.


Promoting and Protecting Against Stigma in Assisted Living and Nursing Homes.

Zimmerman S, Dobbs D, Roth EG, Goldman S, Peeples AD, Wallace B.

Gerontologist. 2016 Jun;56(3):535-47. doi: 10.1093/geront/gnu058. Epub 2014 Jun 13.


RNABindRPlus: a predictor that combines machine learning and sequence homology-based methods to improve the reliability of predicted RNA-binding residues in proteins.

Walia RR, Xue LC, Wilkins K, El-Manzalawy Y, Dobbs D, Honavar V.

PLoS One. 2014 May 20;9(5):e97725. doi: 10.1371/journal.pone.0097725. eCollection 2014.


Going digital: adoption of electronic health records in assisted living facilities.

Holup AA, Dobbs D, Temple A, Hyer K.

J Appl Gerontol. 2014 Jun;33(4):494-504. doi: 10.1177/0733464812454009. Epub 2012 Aug 1.


Certified nursing assistants' perspectives of nursing home residents' pain experience: communication patterns, cultural context, and the role of empathy.

Dobbs D, Baker T, Carrion IV, Vongxaiburana E, Hyer K.

Pain Manag Nurs. 2014 Mar;15(1):87-96. doi: 10.1016/j.pmn.2012.06.008. Epub 2012 Aug 18.


Hospice use and public expenditures at the end of life in assisted living residents in a Florida Medicaid waiver program.

Meng H, Dobbs D, Wang S, Hyer K.

J Am Geriatr Soc. 2013 Oct;61(10):1777-81. doi: 10.1111/jgs.12459. Epub 2013 Oct 1.


DockRank: ranking docked conformations using partner-specific sequence homology-based protein interface prediction.

Xue LC, Jordan RA, El-Manzalawy Y, Dobbs D, Honavar V.

Proteins. 2014 Feb;82(2):250-67. doi: 10.1002/prot.24370. Epub 2013 Oct 17.


Facility characteristics associated with the use of electronic health records in residential care facilities.

Holup AA, Dobbs D, Meng H, Hyer K.

J Am Med Inform Assoc. 2013 Jul-Aug;20(4):787-91. doi: 10.1136/amiajnl-2012-001564. Epub 2013 May 3.


Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art.

Walia RR, Caragea C, Lewis BA, Towfic F, Terribilini M, El-Manzalawy Y, Dobbs D, Honavar V.

BMC Bioinformatics. 2012 May 10;13:89. doi: 10.1186/1471-2105-13-89.


Innate and adaptive immune responses during acute M. tuberculosis infection in adult household contacts in Kampala, Uganda.

Mahan CS, Zalwango S, Thiel BA, Malone LL, Chervenak KA, Baseke J, Dobbs D, Stein CM, Mayanja H, Joloba M, Whalen CC, Boom WH.

Am J Trop Med Hyg. 2012 Apr;86(4):690-7. doi: 10.4269/ajtmh.2012.11-0553.


Predicting protein-protein interface residues using local surface structural similarity.

Jordan RA, El-Manzalawy Y, Dobbs D, Honavar V.

BMC Bioinformatics. 2012 Mar 18;13:41. doi: 10.1186/1471-2105-13-41.


The role of race and ethnicity in predicting length of hospice care among older adults.

Park NS, Carrion IV, Lee BS, Dobbs D, Shin HJ, Becker MA.

J Palliat Med. 2012 Feb;15(2):149-53. doi: 10.1089/jpm.2011.0220. Epub 2012 Feb 7.


Predicting RNA-protein interactions using only sequence information.

Muppirala UK, Honavar VG, Dobbs D.

BMC Bioinformatics. 2011 Dec 22;12:489. doi: 10.1186/1471-2105-12-489.


Exploring correlates of turnover among nursing assistants in the National Nursing Home Survey.

Temple A, Dobbs D, Andel R.

J Nurs Adm. 2011 Jul-Aug;41(7-8 Suppl):S34-42. doi: 10.1097/NNA.0b013e318221c34b.


The influence of hospice use on nursing home and hospital use in assisted living among dual-eligible enrollees.

Dobbs D, Meng H, Hyer K, Volicer L.

J Am Med Dir Assoc. 2012 Feb;13(2):189.e9-189.e13. doi: 10.1016/j.jamda.2011.06.001. Epub 2011 Jul 18.


HomPPI: a class of sequence homology based protein-protein interface prediction methods.

Xue LC, Dobbs D, Honavar V.

BMC Bioinformatics. 2011 Jun 17;12:244. doi: 10.1186/1471-2105-12-244.


Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step.

Steczkiewicz K, Zimmermann MT, Kurcinski M, Lewis BA, Dobbs D, Kloczkowski A, Jernigan RL, Kolinski A, Ginalski K.

Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9443-8. doi: 10.1073/pnas.1015399108. Epub 2011 May 23.


Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases.

Curtin SJ, Zhang F, Sander JD, Haun WJ, Starker C, Baltes NJ, Reyon D, Dahlborg EJ, Goodwin MJ, Coffman AP, Dobbs D, Joung JK, Voytas DF, Stupar RM.

Plant Physiol. 2011 Jun;156(2):466-73. doi: 10.1104/pp.111.172981. Epub 2011 Apr 4.


Nurse managers' perspectives of structural and process characteristics related to residents' advance directives in nursing homes.

Krok J, Dobbs D, Hyer K, Polivka-West L.

Appl Nurs Res. 2011 Nov;24(4):e45-50. doi: 10.1016/j.apnr.2010.11.004. Epub 2011 Mar 24.


ZFNGenome: a comprehensive resource for locating zinc finger nuclease target sites in model organisms.

Reyon D, Kirkpatrick JR, Sander JD, Zhang F, Voytas DF, Joung JK, Dobbs D, Coffman CR.

BMC Genomics. 2011 Jan 28;12:83. doi: 10.1186/1471-2164-12-83.


Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA).

Sander JD, Dahlborg EJ, Goodwin MJ, Cade L, Zhang F, Cifuentes D, Curtin SJ, Blackburn JS, Thibodeau-Beganny S, Qi Y, Pierick CJ, Hoffman E, Maeder ML, Khayter C, Reyon D, Dobbs D, Langenau DM, Stupar RM, Giraldez AJ, Voytas DF, Peterson RT, Yeh JR, Joung JK.

Nat Methods. 2011 Jan;8(1):67-9. doi: 10.1038/nmeth.1542. Epub 2010 Dec 12.

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