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Items: 1 to 50 of 56

1.

Chemical cross-linking of xenopericardial biomeshes: A bottom-up study of structural and functional correlations.

Grebenik EA, Istranov LP, Istranova EV, Churbanov SN, Shavkuta BS, Dmitriev RI, Veryasova NN, Kotova SL, Kurkov AV, Shekhter AB, Timashev PS.

Xenotransplantation. 2019 Jan 22:e12506. doi: 10.1111/xen.12506. [Epub ahead of print]

PMID:
30815940
2.

Background-Free Fluorescence-Decay-Time Sensing and Imaging of pH with Highly Photostable Diazaoxotriangulenium Dyes.

Dalfen I, Dmitriev RI, Holst G, Klimant I, Borisov SM.

Anal Chem. 2019 Jan 2;91(1):808-816. doi: 10.1021/acs.analchem.8b02534. Epub 2018 Dec 19.

PMID:
30518209
3.

Hydrogel-assisted neuroregeneration approaches towards brain injury therapy: A state-of-the-art review.

Kornev VA, Grebenik EA, Solovieva AB, Dmitriev RI, Timashev PS.

Comput Struct Biotechnol J. 2018 Nov 2;16:488-502. doi: 10.1016/j.csbj.2018.10.011. eCollection 2018. Review.

4.

Nanoparticle-based fluoroionophore for analysis of potassium ion dynamics in 3D tissue models and in vivo.

Mueller BJ, Zhdanov AV, Borisov SM, Foley T, Okkelman IA, Tsytsarev V, Tang Q, Erzurumlu RS, Chen Y, Zhang H, Toncelli C, Klimant I, Papkovsky DB, Dmitriev RI.

Adv Funct Mater. 2018 Feb 28;28(9). pii: 1704598. doi: 10.1002/adfm.201704598. Epub 2018 Jan 5.

5.

Cellulose-based scaffolds for fluorescence lifetime imaging-assisted tissue engineering.

O'Donnell N, Okkelman IA, Timashev P, Gromovykh TI, Papkovsky DB, Dmitriev RI.

Acta Biomater. 2018 Oct 15;80:85-96. doi: 10.1016/j.actbio.2018.09.034. Epub 2018 Sep 25.

PMID:
30261339
6.

Imaging of oxygen and hypoxia in cell and tissue samples.

Papkovsky DB, Dmitriev RI.

Cell Mol Life Sci. 2018 Aug;75(16):2963-2980. doi: 10.1007/s00018-018-2840-x. Epub 2018 May 14. Review.

PMID:
29761206
7.

Stop codon readthrough generates a C-terminally extended variant of the human vitamin D receptor with reduced calcitriol response.

Loughran G, Jungreis I, Tzani I, Power M, Dmitriev RI, Ivanov IP, Kellis M, Atkins JF.

J Biol Chem. 2018 Mar 23;293(12):4434-4444. doi: 10.1074/jbc.M117.818526. Epub 2018 Jan 31.

8.

Multi-Parametric Imaging of Hypoxia and Cell Cycle in Intestinal Organoid Culture.

Okkelman IA, Foley T, Papkovsky DB, Dmitriev RI.

Adv Exp Med Biol. 2017;1035:85-103. doi: 10.1007/978-3-319-67358-5_6.

PMID:
29080132
9.

Fabrication and Handling of 3D Scaffolds Based on Polymers and Decellularized Tissues.

Shpichka A, Koroleva A, Kuznetsova D, Dmitriev RI, Timashev P.

Adv Exp Med Biol. 2017;1035:71-81. doi: 10.1007/978-3-319-67358-5_5. Review.

PMID:
29080131
10.

Three-Dimensional Tissue Models and Available Probes for Multi-Parametric Live Cell Microscopy: A Brief Overview.

O'Donnell N, Dmitriev RI.

Adv Exp Med Biol. 2017;1035:49-67. doi: 10.1007/978-3-319-67358-5_4. Review.

PMID:
29080130
11.

Live cell imaging of mouse intestinal organoids reveals heterogeneity in their oxygenation.

Okkelman IA, Foley T, Papkovsky DB, Dmitriev RI.

Biomaterials. 2017 Nov;146:86-96. doi: 10.1016/j.biomaterials.2017.08.043. Epub 2017 Sep 3.

PMID:
28898760
12.

Steering surface topographies of electrospun fibers: understanding the mechanisms.

Yazgan G, Dmitriev RI, Tyagi V, Jenkins J, Rotaru GM, Rottmar M, Rossi RM, Toncelli C, Papkovsky DB, Maniura-Weber K, Fortunato G.

Sci Rep. 2017 Mar 13;7(1):158. doi: 10.1038/s41598-017-00181-0.

13.

Use of Fluorescence Lifetime Imaging Microscopy (FLIM) as a Timer of Cell Cycle S Phase.

Okkelman IA, Dmitriev RI, Foley T, Papkovsky DB.

PLoS One. 2016 Dec 14;11(12):e0167385. doi: 10.1371/journal.pone.0167385. eCollection 2016.

14.

Sulforhodamine Nanothermometer for Multiparametric Fluorescence Lifetime Imaging Microscopy.

Jenkins J, Borisov SM, Papkovsky DB, Dmitriev RI.

Anal Chem. 2016 Nov 1;88(21):10566-10572. Epub 2016 Oct 10.

PMID:
27696826
15.

The Ca2+/Mn2+-transporting SPCA2 pump is regulated by oxygen and cell density in colon cancer cells.

Jenkins J, Papkovsky DB, Dmitriev RI.

Biochem J. 2016 Aug 15;473(16):2507-18. doi: 10.1042/BCJ20160477. Epub 2016 Jun 17.

PMID:
27316461
16.

Systematic analysis of the PTEN 5' leader identifies a major AUU initiated proteoform.

Tzani I, Ivanov IP, Andreev DE, Dmitriev RI, Dean KA, Baranov PV, Atkins JF, Loughran G.

Open Biol. 2016 May;6(5). pii: 150203. doi: 10.1098/rsob.150203. Epub 2016 May 25.

17.

Evolutionary diversification of the BetaM interactome acquired through co-option of the ATP1B4 gene in placental mammals.

Korneenko TV, Pestov NB, Ahmad N, Okkelman IA, Dmitriev RI, Shakhparonov MI, Modyanov NN.

Sci Rep. 2016 Mar 4;6:22395. doi: 10.1038/srep22395.

18.

Metallochelate Coupling of Phosphorescent Pt-Porphyrins to Peptides, Proteins, and Self-Assembling Protein Nanoparticles.

Dmitriev RI, O'Donnell N, Papkovsky DB.

Bioconjug Chem. 2016 Feb 17;27(2):439-45. doi: 10.1021/acs.bioconjchem.5b00535. Epub 2016 Jan 4.

PMID:
26704593
19.

Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes.

Andreev DE, O'Connor PB, Zhdanov AV, Dmitriev RI, Shatsky IN, Papkovsky DB, Baranov PV.

Genome Biol. 2015 May 6;16:90. doi: 10.1186/s13059-015-0651-z.

20.

Intracellular probes for imaging oxygen concentration: how good are they?

Dmitriev RI, Papkovsky DB.

Methods Appl Fluoresc. 2015 Apr 21;3(3):034001. doi: 10.1088/2050-6120/3/3/034001.

PMID:
29148495
21.

Versatile Conjugated Polymer Nanoparticles for High-Resolution O2 Imaging in Cells and 3D Tissue Models.

Dmitriev RI, Borisov SM, Düssmann H, Sun S, Müller BJ, Prehn J, Baklaushev VP, Klimant I, Papkovsky DB.

ACS Nano. 2015 May 26;9(5):5275-88. doi: 10.1021/acsnano.5b00771. Epub 2015 Apr 15.

PMID:
25858428
22.

Oxygen-sensing scaffolds for 3-dimensional cell and tissue culture.

Jenkins J, Dmitriev RI, Morten K, McDermott KW, Papkovsky DB.

Acta Biomater. 2015 Apr;16:126-35. doi: 10.1016/j.actbio.2015.01.032. Epub 2015 Jan 31.

PMID:
25653216
23.

In vitro ischemia decreases histone H4K16 acetylation in neural cells.

Dmitriev RI, Papkovsky DB.

FEBS Lett. 2015 Jan 2;589(1):138-44. doi: 10.1016/j.febslet.2014.11.038. Epub 2014 Dec 3.

24.

Multi-parametric O₂ imaging in three-dimensional neural cell models with the phosphorescent probes.

Dmitriev RI, Papkovsky DB.

Methods Mol Biol. 2015;1254:55-71. doi: 10.1007/978-1-4939-2152-2_5.

PMID:
25431057
25.

Imaging oxygen in neural cell and tissue models by means of anionic cell-permeable phosphorescent nanoparticles.

Dmitriev RI, Borisov SM, Kondrashina AV, Pakan JM, Anilkumar U, Prehn JH, Zhdanov AV, McDermott KW, Klimant I, Papkovsky DB.

Cell Mol Life Sci. 2015 Jan;72(2):367-81. doi: 10.1007/s00018-014-1673-5. Epub 2014 Jul 9.

PMID:
25006059
26.

Two distinct nuclear localization signals in mammalian MSL1 regulate its function.

Dmitriev RI, Pestov NB, Shakhparonov MI, Okkelman IA.

J Cell Biochem. 2014 Nov;115(11):1967-73. doi: 10.1002/jcb.24868.

PMID:
24913909
27.

Kinetic analysis of local oxygenation and respiratory responses of mammalian cells using intracellular oxygen-sensitive probes and time-resolved fluorometry.

Zhdanov AV, Dmitriev RI, Hynes J, Papkovsky DB.

Methods Enzymol. 2014;542:183-207. doi: 10.1016/B978-0-12-416618-9.00010-8.

PMID:
24862267
28.

Imaging of neurosphere oxygenation with phosphorescent probes.

Dmitriev RI, Zhdanov AV, Nolan YM, Papkovsky DB.

Biomaterials. 2013 Dec;34(37):9307-17. doi: 10.1016/j.biomaterials.2013.08.065. Epub 2013 Sep 6.

PMID:
24016849
29.

Availability of the key metabolic substrates dictates the respiratory response of cancer cells to the mitochondrial uncoupling.

Zhdanov AV, Waters AH, Golubeva AV, Dmitriev RI, Papkovsky DB.

Biochim Biophys Acta. 2014 Jan;1837(1):51-62. doi: 10.1016/j.bbabio.2013.07.008. Epub 2013 Jul 23.

30.

Measurement of cell respiration and oxygenation in standard multichannel biochips using phosphorescent O2-sensitive probes.

Kondrashina AV, Papkovsky DB, Dmitriev RI.

Analyst. 2013 Sep 7;138(17):4915-21. doi: 10.1039/c3an00658a. Epub 2013 Jun 27.

PMID:
23803790
31.

Biological detection by optical oxygen sensing.

Papkovsky DB, Dmitriev RI.

Chem Soc Rev. 2013 Nov 21;42(22):8700-32. doi: 10.1039/c3cs60131e. Review.

PMID:
23775387
32.

Chronic hypoxia leads to a glycolytic phenotype and suppressed HIF-2 signaling in PC12 cells.

Zhdanov AV, Dmitriev RI, Golubeva AV, Gavrilova SA, Papkovsky DB.

Biochim Biophys Acta. 2013 Jun;1830(6):3553-69. doi: 10.1016/j.bbagen.2013.02.016. Epub 2013 Feb 24.

PMID:
23462283
33.

Genome-wide investigation of cellular targets and mode of action of the antifungal bacterial metabolite 2,4-diacetylphloroglucinol in Saccharomyces cerevisiae.

Troppens DM, Dmitriev RI, Papkovsky DB, O'Gara F, Morrissey JP.

FEMS Yeast Res. 2013 May;13(3):322-34. doi: 10.1111/1567-1364.12037. Epub 2013 Mar 5.

34.

Bafilomycin A1 activates HIF-dependent signalling in human colon cancer cells via mitochondrial uncoupling.

Zhdanov AV, Dmitriev RI, Papkovsky DB.

Biosci Rep. 2012 Dec;32(6):587-95. doi: 10.1042/BSR20120085.

35.

Complexes of Ir(III)-octaethylporphyrin with peptides as probes for sensing cellular O2.

Koren K, Dmitriev RI, Borisov SM, Papkovsky DB, Klimant I.

Chembiochem. 2012 May 29;13(8):1184-90. doi: 10.1002/cbic.201200083. Epub 2012 Apr 24.

36.

Assessment of cellular oxygen gradients with a panel of phosphorescent oxygen-sensitive probes.

Dmitriev RI, Zhdanov AV, Jasionek G, Papkovsky DB.

Anal Chem. 2012 Mar 20;84(6):2930-8. doi: 10.1021/ac3000144. Epub 2012 Feb 29.

PMID:
22380020
37.

Optical probes and techniques for O2 measurement in live cells and tissue.

Dmitriev RI, Papkovsky DB.

Cell Mol Life Sci. 2012 Jun;69(12):2025-39. doi: 10.1007/s00018-011-0914-0. Epub 2012 Jan 17. Review.

38.

Structural evolution and tissue-specific expression of tetrapod-specific second isoform of secretory pathway Ca2+-ATPase.

Pestov NB, Dmitriev RI, Kostina MB, Korneenko TV, Shakhparonov MI, Modyanov NN.

Biochem Biophys Res Commun. 2012 Jan 27;417(4):1298-303. doi: 10.1016/j.bbrc.2011.12.135. Epub 2012 Jan 3.

PMID:
22240025
39.

Cell-penetrating conjugates of coproporphyrins with oligoarginine peptides: rational design and application for sensing intracellular O2.

Dmitriev RI, Ropiak HM, Ponomarev GV, Yashunsky DV, Papkovsky DB.

Bioconjug Chem. 2011 Dec 21;22(12):2507-18. doi: 10.1021/bc200324q. Epub 2011 Nov 10.

PMID:
22035070
40.

Bactenecin 7 peptide fragment as a tool for intracellular delivery of a phosphorescent oxygen sensor.

Dmitriev RI, Ropiak HM, Yashunsky DV, Ponomarev GV, Zhdanov AV, Papkovsky DB.

FEBS J. 2010 Nov;277(22):4651-61. doi: 10.1111/j.1742-4658.2010.07872.x. Epub 2010 Sep 30.

41.

Bafilomycin A1 activates respiration of neuronal cells via uncoupling associated with flickering depolarization of mitochondria.

Zhdanov AV, Dmitriev RI, Papkovsky DB.

Cell Mol Life Sci. 2011 Mar;68(5):903-17. doi: 10.1007/s00018-010-0502-8. Epub 2010 Sep 6.

42.

Isolation of extracellular recombinant fragment of rat connexin-43.

Baklaushev VP, Gurina OI, Yusubalieva GM, Dmitriev RI, Makarov AV, Chekhonin VP.

Bull Exp Biol Med. 2009 Sep;148(3):389-93. English, Russian.

PMID:
20396696
43.

Imaging of cellular oxygen and analysis of metabolic responses of mammalian cells.

Fercher A, O'Riordan TC, Zhdanov AV, Dmitriev RI, Papkovsky DB.

Methods Mol Biol. 2010;591:257-73. doi: 10.1007/978-1-60761-404-3_16.

PMID:
19957136
44.

Intracellular oxygen-sensitive phosphorescent probes based on cell-penetrating peptides.

Dmitriev RI, Zhdanov AV, Ponomarev GV, Yashunski DV, Papkovsky DB.

Anal Biochem. 2010 Mar 1;398(1):24-33. doi: 10.1016/j.ab.2009.10.048. Epub 2009 Nov 18.

PMID:
19931212
45.

Nuclear transport of protein TTC4 depends on the cell cycle.

Dmitriev RI, Okkelman IA, Abdulin RA, Shakhparonov MI, Pestov NB.

Cell Tissue Res. 2009 Jun;336(3):521-7. doi: 10.1007/s00441-009-0785-y. Epub 2009 Apr 24.

PMID:
19390865
46.

Structure and function of MYST1 histone acetyltransferase in the interactome of animal cells.

Dmitriev RI, Shakhparonov MI, Pestov NB.

Biochemistry (Mosc). 2008 Aug;73(8):839-52. Review.

PMID:
18774930
47.

[Decrease in expression of human J-chain in lung squamous cell cancer and adenocarcinoma].

Slizhikova DK, Zinov'eva MV, Kuz'min DV, Snezhkov EB, Shakhparonov MI, Dmitriev RI, Antipova NV, Zavalova LL, Sverdlov ED.

Mol Biol (Mosk). 2007 Jul-Aug;41(4):659-65. Russian.

PMID:
17936986
48.

Characterization of hampin/MSL1 as a node in the nuclear interactome.

Dmitriev RI, Korneenko TV, Bessonov AA, Shakhparonov MI, Modyanov NN, Pestov NB.

Biochem Biophys Res Commun. 2007 Apr 20;355(4):1051-7. Epub 2007 Feb 23.

49.

Intracellular location of hampin isoforms.

Dmitriev RI, Pestov NB, Korneenko TV, Shakhparonov MI.

Dokl Biochem Biophys. 2006 May-Jun;408:130-2. No abstract available.

PMID:
16913411
50.

[Tissue specificity of alternative splicing products of mouse mRNA encoding new protein hampin homologous to the Drosophila MSL-1 protein].

Dmitriev RI, Pestov NB, Korneenko TV, Gerasimova AV, Zhao Kh, Modianov NN, Kostina MB, Shakhparonov MI.

Bioorg Khim. 2005 Jul-Aug;31(4):363-71. Russian.

PMID:
16119455

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