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Items: 46

1.

Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota.

McKay LJ, Dlakić M, Fields MW, Delmont TO, Eren AM, Jay ZJ, Klingelsmith KB, Rusch DB, Inskeep WP.

Nat Microbiol. 2019 Apr;4(4):614-622. doi: 10.1038/s41564-019-0362-4. Epub 2019 Mar 4.

PMID:
30833730
2.

Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats.

Jay ZJ, Beam JP, Dlakić M, Rusch DB, Kozubal MA, Inskeep WP.

Nat Microbiol. 2018 Jun;3(6):732-740. doi: 10.1038/s41564-018-0163-1. Epub 2018 May 14.

PMID:
29760463
3.

The Cytolethal Distending Toxin Contributes to Microbial Virulence and Disease Pathogenesis by Acting As a Tri-Perditious Toxin.

Scuron MD, Boesze-Battaglia K, Dlakić M, Shenker BJ.

Front Cell Infect Microbiol. 2016 Dec 5;6:168. eCollection 2016. Review.

4.

A Journey of Cytolethal Distending Toxins through Cell Membranes.

Boesze-Battaglia K, Alexander D, Dlakić M, Shenker BJ.

Front Cell Infect Microbiol. 2016 Aug 10;6:81. doi: 10.3389/fcimb.2016.00081. eCollection 2016. Review.

5.

The toxicity of the Aggregatibacter actinomycetemcomitans cytolethal distending toxin correlates with its phosphatidylinositol-3,4,5-triphosphate phosphatase activity.

Shenker BJ, Boesze-Battaglia K, Scuron MD, Walker LP, Zekavat A, Dlakić M.

Cell Microbiol. 2016 Feb;18(2):223-43. doi: 10.1111/cmi.12497. Epub 2015 Sep 2.

PMID:
26247396
6.

The Aggregatibacter actinomycetemcomitans Cytolethal Distending Toxin Active Subunit CdtB Contains a Cholesterol Recognition Sequence Required for Toxin Binding and Subunit Internalization.

Boesze-Battaglia K, Walker LP, Zekavat A, Dlakić M, Scuron MD, Nygren P, Shenker BJ.

Infect Immun. 2015 Oct;83(10):4042-55. doi: 10.1128/IAI.00788-15. Epub 2015 Jul 27.

7.
8.

Blockade of the PI-3K signalling pathway by the Aggregatibacter actinomycetemcomitans cytolethal distending toxin induces macrophages to synthesize and secrete pro-inflammatory cytokines.

Shenker BJ, Walker LP, Zekavat A, Dlakić M, Boesze-Battaglia K.

Cell Microbiol. 2014 Sep;16(9):1391-404. doi: 10.1111/cmi.12299. Epub 2014 May 1.

9.

Odorant receptors of a primitive hymenopteran pest, the wheat stem sawfly.

Gress JC, Robertson HM, Weaver DK, Dlakić M, Wanner KW.

Insect Mol Biol. 2013 Dec;22(6):659-67. doi: 10.1111/imb.12053. Epub 2013 Aug 22.

PMID:
23964849
10.

Structural studies of E73 from a hyperthermophilic archaeal virus identify the "RH3" domain, an elaborated ribbon-helix-helix motif involved in DNA recognition.

Schlenker C, Goel A, Tripet BP, Menon S, Willi T, Dlakić M, Young MJ, Lawrence CM, Copié V.

Biochemistry. 2012 Apr 3;51(13):2899-910. doi: 10.1021/bi201791s. Epub 2012 Mar 22.

11.

Prp8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse transcriptase.

Dlakić M, Mushegian A.

RNA. 2011 May;17(5):799-808. doi: 10.1261/rna.2396011. Epub 2011 Mar 25.

12.

Terminal oxidase diversity and function in "Metallosphaera yellowstonensis": gene expression and protein modeling suggest mechanisms of Fe(II) oxidation in the sulfolobales.

Kozubal MA, Dlakic M, Macur RE, Inskeep WP.

Appl Environ Microbiol. 2011 Mar;77(5):1844-53. doi: 10.1128/AEM.01646-10. Epub 2011 Jan 14.

13.

HHsvm: fast and accurate classification of profile-profile matches identified by HHsearch.

Dlakić M.

Bioinformatics. 2009 Dec 1;25(23):3071-6. doi: 10.1093/bioinformatics/btp555. Epub 2009 Sep 22.

14.

Coupling of double-stranded RNA synthesis and siRNA generation in fission yeast RNAi.

Colmenares SU, Buker SM, Buhler M, Dlakić M, Moazed D.

Mol Cell. 2007 Aug 3;27(3):449-61. Epub 2007 Jul 19.

15.

Roles of the HEAT repeat proteins Utp10 and Utp20 in 40S ribosome maturation.

Dez C, Dlakić M, Tollervey D.

RNA. 2007 Sep;13(9):1516-27. Epub 2007 Jul 24.

16.

A novel mode of action for a microbial-derived immunotoxin: the cytolethal distending toxin subunit B exhibits phosphatidylinositol 3,4,5-triphosphate phosphatase activity.

Shenker BJ, Dlakic M, Walker LP, Besack D, Jaffe E, LaBelle E, Boesze-Battaglia K.

J Immunol. 2007 Apr 15;178(8):5099-108.

17.

DUF283 domain of Dicer proteins has a double-stranded RNA-binding fold.

Dlakić M.

Bioinformatics. 2006 Nov 15;22(22):2711-4. Epub 2006 Sep 5.

PMID:
16954143
18.

Characterization of the archaeal thermophile Sulfolobus turreted icosahedral virus validates an evolutionary link among double-stranded DNA viruses from all domains of life.

Maaty WS, Ortmann AC, Dlakić M, Schulstad K, Hilmer JK, Liepold L, Weidenheft B, Khayat R, Douglas T, Young MJ, Bothner B.

J Virol. 2006 Aug;80(15):7625-35.

19.

The ribosomal subunit assembly line.

Dlakić M.

Genome Biol. 2005;6(10):234. Epub 2005 Sep 19. Review.

20.

Epimerase active domain of Pseudomonas aeruginosa AlgG, a protein that contains a right-handed beta-helix.

Douthit SA, Dlakic M, Ohman DE, Franklin MJ.

J Bacteriol. 2005 Jul;187(13):4573-83.

21.

Functional characterization of XendoU, the endoribonuclease involved in small nucleolar RNA biosynthesis.

Gioia U, Laneve P, Dlakic M, Arceci M, Bozzoni I, Caffarelli E.

J Biol Chem. 2005 May 13;280(19):18996-9002. Epub 2005 Mar 7.

22.

3D models of yeast RNase P/MRP proteins Rpp1p and Pop3p.

Dlakić M.

RNA. 2005 Feb;11(2):123-7. Epub 2004 Dec 21.

23.

PIN domain of Nob1p is required for D-site cleavage in 20S pre-rRNA.

Fatica A, Tollervey D, Dlakić M.

RNA. 2004 Nov;10(11):1698-701. Epub 2004 Sep 23.

24.
25.

A pre-ribosome-associated HEAT-repeat protein is required for export of both ribosomal subunits.

Oeffinger M, Dlakic M, Tollervey D.

Genes Dev. 2004 Jan 15;18(2):196-209. Epub 2004 Jan 16.

26.

Automated identification of putative methyltransferases from genomic open reading frames.

Katz JE, Dlakić M, Clarke S.

Mol Cell Proteomics. 2003 Aug;2(8):525-40. Epub 2003 Jul 18.

27.

Nob1p is required for cleavage of the 3' end of 18S rRNA.

Fatica A, Oeffinger M, Dlakić M, Tollervey D.

Mol Cell Biol. 2003 Mar;23(5):1798-807.

28.

Naf1 p is a box H/ACA snoRNP assembly factor.

Fatica A, Dlakić M, Tollervey D.

RNA. 2002 Dec;8(12):1502-14.

30.

A new family of putative insulin receptor-like proteins in C. elegans.

Dlakić M.

Curr Biol. 2002 Mar 5;12(5):R155-7. No abstract available.

31.

Ssf1p prevents premature processing of an early pre-60S ribosomal particle.

Fatica A, Cronshaw AD, Dlakić M, Tollervey D.

Mol Cell. 2002 Feb;9(2):341-51.

32.
33.
34.

Is CdtB a nuclease or a phosphatase?

Dlakic M.

Science. 2001 Jan 26;291(5504):547. No abstract available.

35.
36.

Functionally unrelated signalling proteins contain a fold similar to Mg2+-dependent endonucleases.

Dlakić M.

Trends Biochem Sci. 2000 Jun;25(6):272-3. No abstract available.

PMID:
10838565
37.
38.

DIAMOD: display and modeling of DNA bending.

Dlakic M, Harrington RE.

Bioinformatics. 1998;14(4):326-31.

PMID:
9632827
39.

Strained DNA is kinked by low concentrations of Zn2+.

Han W, Dlakic M, Zhu YJ, Lindsay SM, Harrington RE.

Proc Natl Acad Sci U S A. 1997 Sep 30;94(20):10565-70.

40.

Kinked DNA.

Han W, Lindsay SM, Dlakic M, Harrington RE.

Nature. 1997 Apr 10;386(6625):563. No abstract available.

PMID:
9121578
41.

The organic crystallizing agent 2-methyl-2,4-pentanediol reduces DNA curvature by means of structural changes in A-tracts.

Dlakic M, Park K, Griffith JD, Harvey SC, Harrington RE.

J Biol Chem. 1996 Jul 26;271(30):17911-9.

42.

The effects of sequence context on DNA curvature.

Dlakić M, Harrington RE.

Proc Natl Acad Sci U S A. 1996 Apr 30;93(9):3847-52. Erratum in: Proc Natl Acad Sci U S A 1996 Aug 6;93(16):8796.

43.

Bending and torsional flexibility of G/C-rich sequences as determined by cyclization assays.

Dlakic M, Harrington RE.

J Biol Chem. 1995 Dec 15;270(50):29945-52.

44.

What is the basis of sequence-directed curvature in DNAs containing A tracts?

Harvey SC, Dlakic M, Griffith J, Harrington R, Park K, Sprous D, Zacharias W.

J Biomol Struct Dyn. 1995 Oct;13(2):301-7. Review.

PMID:
8579789
45.

Physiological concentration of magnesium ions induces a strong macroscopic curvature in GGGCCC-containing DNA.

Brukner I, Susic S, Dlakic M, Savic A, Pongor S.

J Mol Biol. 1994 Feb 11;236(1):26-32.

PMID:
8107109
46.

Evidence for opposite groove-directed curvature of GGGCCC and AAAAA sequence elements.

Brukner I, Dlakic M, Savic A, Susic S, Pongor S, Suck D.

Nucleic Acids Res. 1993 Feb 25;21(4):1025-9. Erratum in: Nucleic Acids Res 1993 Mar 11;21(5):1332.

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