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Formylated N-terminal methionine is absent from the Mycoplasma hyopneumoniae proteome: Implications for translation initiation.

Jarocki VM, Steele JR, Widjaja M, Tacchi JL, Padula MP, Djordjevic SP.

Int J Med Microbiol. 2019 Jul;309(5):288-298. doi: 10.1016/j.ijmm.2019.03.005. Epub 2019 May 9.


Salmonella Genomic Island 1B Variant Found in a Sequence Type 117 Avian Pathogenic Escherichia coli Isolate.

Cummins ML, Roy Chowdhury P, Marenda MS, Browning GF, Djordjevic SP.

mSphere. 2019 May 22;4(3). pii: e00169-19. doi: 10.1128/mSphere.00169-19.


Terminomics Methodologies and the Completeness of Reductive Dimethylation: A Meta-Analysis of Publicly Available Datasets.

Hurtado Silva M, Berry IJ, Strange N, Djordjevic SP, Padula MP.

Proteomes. 2019 Mar 29;7(2). pii: E11. doi: 10.3390/proteomes7020011.


Identification of a novel lineage of plasmids within phylogenetically diverse subclades of IncHI2-ST1 plasmids.

Roy Chowdhury P, Fourment M, DeMaere MZ, Monahan L, Merlino J, Gottlieb T, Darling AE, Djordjevic SP.

Plasmid. 2019 Mar;102:56-61. doi: 10.1016/j.plasmid.2019.03.002. Epub 2019 Mar 15.


Whole-genome analysis of extraintestinal Escherichia coli sequence type 73 from a single hospital over a 2 year period identified different circulating clonal groups.

Bogema DR, McKinnon J, Liu M, Hitchick N, Miller N, Venturini C, Iredell J, Darling AE, Roy Chowdury P, Djordjevic SP.

Microb Genom. 2019 Feb 27. doi: 10.1099/mgen.0.000255. [Epub ahead of print]


High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaechei.

Monahan LG, DeMaere MZ, Cummins ML, Djordjevic SP, Roy Chowdhury P, Darling AE.

Gut Pathog. 2019 Feb 13;11:3. doi: 10.1186/s13099-019-0288-7. eCollection 2019.


Whole genome sequence analysis of Australian avian pathogenic Escherichia coli that carry the class 1 integrase gene.

Cummins ML, Reid CJ, Roy Chowdhury P, Bushell RN, Esbert N, Tivendale KA, Noormohammadi AH, Islam S, Marenda MS, Browning GF, Markham PF, Djordjevic SP.

Microb Genom. 2019 Feb;5(2). doi: 10.1099/mgen.0.000250. Epub 2019 Jan 23.


Multidrug Resistant Uropathogenic Escherichia coli ST405 With a Novel, Composite IS26 Transposon in a Unique Chromosomal Location.

Roy Chowdhury P, McKinnon J, Liu M, Djordjevic SP.

Front Microbiol. 2019 Jan 8;9:3212. doi: 10.3389/fmicb.2018.03212. eCollection 2018.


Mycoplasma hyopneumoniae resides intracellularly within porcine epithelial cells.

Raymond BBA, Turnbull L, Jenkins C, Madhkoor R, Schleicher I, Uphoff CC, Whitchurch CB, Rohde M, Djordjevic SP.

Sci Rep. 2018 Dec 6;8(1):17697. doi: 10.1038/s41598-018-36054-3.


Australian porcine clonal complex 10 (CC10) Escherichia coli belong to multiple sublineages of a highly diverse global CC10 phylogeny.

Reid CJ, DeMaere MZ, Djordjevic SP.

Microb Genom. 2019 Mar;5(3). doi: 10.1099/mgen.0.000225. Epub 2018 Oct 10.


Environmental dimensions of antibiotic resistance: assessment of basic science gaps.

Smalla K, Cook K, Djordjevic SP, Klümper U, Gillings M.

FEMS Microbiol Ecol. 2018 Dec 1;94(12). doi: 10.1093/femsec/fiy195.


Extracellular DNA release from the genome-reduced pathogen Mycoplasma hyopneumoniae is essential for biofilm formation on abiotic surfaces.

Raymond BBA, Jenkins C, Turnbull L, Whitchurch CB, Djordjevic SP.

Sci Rep. 2018 Jul 10;8(1):10373. doi: 10.1038/s41598-018-28678-2.


Genomic analysis of multidrug-resistant Escherichia coli ST58 causing urosepsis.

McKinnon J, Roy Chowdhury P, Djordjevic SP.

Int J Antimicrob Agents. 2018 Sep;52(3):430-435. doi: 10.1016/j.ijantimicag.2018.06.017. Epub 2018 Jun 30.


Analysis of Theileria orientalis draft genome sequences reveals potential species-level divergence of the Ikeda, Chitose and Buffeli genotypes.

Bogema DR, Micallef ML, Liu M, Padula MP, Djordjevic SP, Darling AE, Jenkins C.

BMC Genomics. 2018 Apr 27;19(1):298. doi: 10.1186/s12864-018-4701-2.


Extracellular Actin Is a Receptor for Mycoplasma hyopneumoniae.

Raymond BBA, Madhkoor R, Schleicher I, Uphoff CC, Turnbull L, Whitchurch CB, Rohde M, Padula MP, Djordjevic SP.

Front Cell Infect Microbiol. 2018 Feb 27;8:54. doi: 10.3389/fcimb.2018.00054. eCollection 2018.


Corrigendum: Clostridium chauvoei, an Evolutionary Dead-End Pathogen.

Rychener L, In-Albon S, Djordjevic SP, Chowdhury PR, Nicholson P, Ziech RE, de Vargas AC, Frey J, Falquet L.

Front Microbiol. 2018 Mar 6;9:421. doi: 10.3389/fmicb.2018.00421. eCollection 2018.


The Effect of Collimating Lens Focusing on Laser Beam Shape in Matrix Assisted Laser Desorption/Ionization Mass Spectrometry (MALDI-MS).

O'Rourke MB, Raymond BBA, Djordjevic SP, Padula MP.

J Am Soc Mass Spectrom. 2018 Mar;29(3):512-515. doi: 10.1007/s13361-017-1867-9. Epub 2018 Jan 8.


Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26.

Reid CJ, Wyrsch ER, Roy Chowdhury P, Zingali T, Liu M, Darling AE, Chapman TA, Djordjevic SP.

Microb Genom. 2017 Dec;3(12). doi: 10.1099/mgen.0.000143.


Identification of a novel qnrA allele, qnrA8, in environmental Shewanella algae.

Melvold JA, Wyrsch ER, McKinnon J, Roy Chowdhury P, Charles IG, Djordjevic SP.

J Antimicrob Chemother. 2017 Oct 1;72(10):2949-2952. doi: 10.1093/jac/dkx226. No abstract available.


Proteomic Analysis of Extracellular HMGB1 Identifies Binding Partners and Exposes Its Potential Role in Airway Epithelial Cell Homeostasis.

Wong SL, To J, Santos J, Allam VSRR, Dalton JP, Djordjevic SP, Donnelly S, Padula MP, Sukkar MB.

J Proteome Res. 2018 Jan 5;17(1):33-45. doi: 10.1021/acs.jproteome.7b00212. Epub 2017 Nov 14.


Evaluation of ddRADseq for reduced representation metagenome sequencing.

Liu MY, Worden P, Monahan LG, DeMaere MZ, Burke CM, Djordjevic SP, Charles IG, Darling AE.

PeerJ. 2017 Sep 19;5:e3837. doi: 10.7717/peerj.3837. eCollection 2017.


N-terminomics identifies widespread endoproteolysis and novel methionine excision in a genome-reduced bacterial pathogen.

Berry IJ, Jarocki VM, Tacchi JL, Raymond BBA, Widjaja M, Padula MP, Djordjevic SP.

Sci Rep. 2017 Sep 11;7(1):11063. doi: 10.1038/s41598-017-11296-9.


Elongation factor Tu is a multifunctional and processed moonlighting protein.

Widjaja M, Harvey KL, Hagemann L, Berry IJ, Jarocki VM, Raymond BBA, Tacchi JL, Gründel A, Steele JR, Padula MP, Charles IG, Dumke R, Djordjevic SP.

Sci Rep. 2017 Sep 11;7(1):11227. doi: 10.1038/s41598-017-10644-z.


Clostridium chauvoei, an Evolutionary Dead-End Pathogen.

Rychener L, InAlbon S, Djordjevic SP, Chowdhury PR, Ziech RE, de Vargas AC, Frey J, Falquet L.

Front Microbiol. 2017 Jun 9;8:1054. doi: 10.3389/fmicb.2017.01054. eCollection 2017. Erratum in: Front Microbiol. 2018 Mar 06;9:421.


A Comprehensive Guide for Performing Sample Preparation and Top-Down Protein Analysis.

Padula MP, Berry IJ, O Rourke MB, Raymond BB, Santos J, Djordjevic SP.

Proteomes. 2017 Apr 7;5(2). pii: E11. doi: 10.3390/proteomes5020011. Review.


Genomic islands 1 and 2 carry multiple antibiotic resistance genes in Pseudomonas aeruginosa ST235, ST253, ST111 and ST175 and are globally dispersed.

Roy Chowdhury P, Scott MJ, Djordjevic SP.

J Antimicrob Chemother. 2017 Feb;72(2):620-622. doi: 10.1093/jac/dkw471. Epub 2016 Dec 20. No abstract available.


Cross reactivity among the swine mycoplasmas as identified by protein microarray.

Petersen AC, Oneal DC, Seibel JR, Poel K, Daum CL, Djordjevic SP, Minion FC.

Vet Microbiol. 2016 Aug 30;192:204-212. doi: 10.1016/j.vetmic.2016.07.023. Epub 2016 Jul 28.


The quest for improved reproducibility in MALDI mass spectrometry.

O'Rourke MB, Djordjevic SP, Padula MP.

Mass Spectrom Rev. 2018 Mar;37(2):217-228. doi: 10.1002/mas.21515. Epub 2016 Jul 15. Review.


Genomic Microbial Epidemiology Is Needed to Comprehend the Global Problem of Antibiotic Resistance and to Improve Pathogen Diagnosis.

Wyrsch ER, Roy Chowdhury P, Chapman TA, Charles IG, Hammond JM, Djordjevic SP.

Front Microbiol. 2016 Jun 15;7:843. doi: 10.3389/fmicb.2016.00843. eCollection 2016. Review.


Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease.

Roy Chowdhury P, DeMaere M, Chapman T, Worden P, Charles IG, Darling AE, Djordjevic SP.

BMC Microbiol. 2016 Mar 12;16:41. doi: 10.1186/s12866-016-0653-3.


Genomic islands 1 and 2 play key roles in the evolution of extensively drug-resistant ST235 isolates of Pseudomonas aeruginosa.

Roy Chowdhury P, Scott M, Worden P, Huntington P, Hudson B, Karagiannis T, Charles IG, Djordjevic SP.

Open Biol. 2016 Mar;6(3). pii: 150175. doi: 10.1098/rsob.150175.


The Role of CD44 and ERM Proteins in Expression and Functionality of P-glycoprotein in Breast Cancer Cells.

Pokharel D, Padula MP, Lu JF, Jaiswal R, Djordjevic SP, Bebawy M.

Molecules. 2016 Mar 1;21(3):290. doi: 10.3390/molecules21030290.


Post-translational processing targets functionally diverse proteins in Mycoplasma hyopneumoniae.

Tacchi JL, Raymond BB, Haynes PA, Berry IJ, Widjaja M, Bogema DR, Woolley LK, Jenkins C, Minion FC, Padula MP, Djordjevic SP.

Open Biol. 2016 Feb;6(2):150210. doi: 10.1098/rsob.150210.


P40 and P90 from Mpn142 are Targets of Multiple Processing Events on the Surface of Mycoplasma pneumoniae.

Widjaja M, Berry IJ, Pont EJ, Padula MP, Djordjevic SP.

Proteomes. 2015 Dec 16;3(4):512-537. doi: 10.3390/proteomes3040512.


The application of terminomics for the identification of protein start sites and proteoforms in bacteria.

Berry IJ, Steele JR, Padula MP, Djordjevic SP.

Proteomics. 2016 Jan;16(2):257-72. doi: 10.1002/pmic.201500319. Epub 2015 Nov 23. Review.


A non-instrument-based method for the analysis of formalin-fixed paraffin-embedded human spinal cord via matrix-assisted laser desorption/ionisation imaging mass spectrometry.

O'Rourke MB, Djordjevic SP, Padula MP.

Rapid Commun Mass Spectrom. 2015 Oct 15;29(19):1836-40. doi: 10.1002/rcm.7283.


A versatile cost-effective method for the analysis of fresh frozen tissue sections via matrix-assisted laser desorption/ionisation imaging mass spectrometry.

O'Rourke MB, Raymond BB, Djordjevic SP, Padula MP.

Rapid Commun Mass Spectrom. 2015 Apr 15;29(7):637-44. doi: 10.1002/rcm.7138.


Tn6026 and Tn6029 are found in complex resistance regions mobilised by diverse plasmids and chromosomal islands in multiple antibiotic resistant Enterobacteriaceae.

Reid CJ, Roy Chowdhury P, Djordjevic SP.

Plasmid. 2015 Jul;80:127-37. doi: 10.1016/j.plasmid.2015.04.005. Epub 2015 Apr 24. Review.


Comparative genomic analysis of a multiple antimicrobial resistant enterotoxigenic E. coli O157 lineage from Australian pigs.

Wyrsch E, Roy Chowdhury P, Abraham S, Santos J, Darling AE, Charles IG, Chapman TA, Djordjevic SP.

BMC Genomics. 2015 Mar 10;16:165. doi: 10.1186/s12864-015-1382-y.


Temporal dynamics and subpopulation analysis of Theileria orientalis genotypes in cattle.

Jenkins C, Micallef M, Alex SM, Collins D, Djordjevic SP, Bogema DR.

Infect Genet Evol. 2015 Jun;32:199-207. doi: 10.1016/j.meegid.2015.03.017. Epub 2015 Mar 17.


A role for Tn6029 in the evolution of the complex antibiotic resistance gene loci in genomic island 3 in enteroaggregative hemorrhagic Escherichia coli O104:H4.

Roy Chowdhury P, Charles IG, Djordjevic SP.

PLoS One. 2015 Feb 12;10(2):e0115781. doi: 10.1371/journal.pone.0115781. eCollection 2015. Erratum in: PLoS One. 2015;10(4):e0126197.


MHJ_0461 is a multifunctional leucine aminopeptidase on the surface of Mycoplasma hyopneumoniae.

Jarocki VM, Santos J, Tacchi JL, Raymond BB, Deutscher AT, Jenkins C, Padula MP, Djordjevic SP.

Open Biol. 2015 Jan;5(1):140175. doi: 10.1098/rsob.140175.


Non-proteolytic functions of microbial proteases increase pathological complexity.

Jarocki VM, Tacchi JL, Djordjevic SP.

Proteomics. 2015 Mar;15(5-6):1075-88. doi: 10.1002/pmic.201400386. Epub 2015 Feb 6. Review.


Proteolytic processing of the cilium adhesin MHJ_0194 (P123J ) in Mycoplasma hyopneumoniae generates a functionally diverse array of cleavage fragments that bind multiple host molecules.

Raymond BB, Jenkins C, Seymour LM, Tacchi JL, Widjaja M, Jarocki VM, Deutscher AT, Turnbull L, Whitchurch CB, Padula MP, Djordjevic SP.

Cell Microbiol. 2015 Mar;17(3):425-44. doi: 10.1111/cmi.12377. Epub 2014 Nov 22.


Proteome analysis of multidrug-resistant, breast cancer-derived microparticles.

Pokharel D, Padula MP, Lu JF, Tacchi JL, Luk F, Djordjevic SP, Bebawy M.

J Extracell Vesicles. 2014 Aug 22;3. doi: 10.3402/jev.v3.24384. eCollection 2014.


A draft genome of Escherichia coli sequence type 127 strain 2009-46.

Darling AE, McKinnon J, Worden P, Santos J, Charles IG, Chowdhury PR, Djordjevic SP.

Gut Pathog. 2014 Sep 1;6:32. doi: 10.1186/1757-4749-6-32. eCollection 2014.


Genomic interplay in bacterial communities: implications for growth promoting practices in animal husbandry.

Roy Chowdhury P, McKinnon J, Wyrsch E, Hammond JM, Charles IG, Djordjevic SP.

Front Microbiol. 2014 Aug 12;5:394. doi: 10.3389/fmicb.2014.00394. eCollection 2014. Review.


Comparative proteomics and glycoproteomics reveal increased N-linked glycosylation and relaxed sequon specificity in Campylobacter jejuni NCTC11168 O.

Scott NE, Marzook NB, Cain JA, Solis N, Thaysen-Andersen M, Djordjevic SP, Packer NH, Larsen MR, Cordwell SJ.

J Proteome Res. 2014 Nov 7;13(11):5136-50. doi: 10.1021/pr5005554. Epub 2014 Aug 25.


Proteogenomic mapping of Mycoplasma hyopneumoniae virulent strain 232.

Pendarvis K, Padula MP, Tacchi JL, Petersen AC, Djordjevic SP, Burgess SC, Minion FC.

BMC Genomics. 2014 Jul 8;15:576. doi: 10.1186/1471-2164-15-576.


Evaluation of recombinant Mycoplasma hyopneumoniae P97/P102 paralogs formulated with selected adjuvants as vaccines against mycoplasmal pneumonia in pigs.

Woolley LK, Fell SA, Gonsalves JR, Raymond BB, Collins D, Kuit TA, Walker MJ, Djordjevic SP, Eamens GJ, Jenkins C.

Vaccine. 2014 Jul 23;32(34):4333-41. doi: 10.1016/j.vaccine.2014.06.008. Epub 2014 Jun 12.


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