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Items: 28

1.

Draft Genome Sequence of the Caffeine-Degrading Methylotroph Methylorubrum populi Pinkel.

Parales RE, Sharma G, Zhang X, Subuyuj GA, Langner JT, Wright ME, Ditty JL, Dawson SC.

Microbiol Resour Announc. 2019 Nov 21;8(47). pii: e01300-19. doi: 10.1128/MRA.01300-19.

2.

Hybrid Two-Component Sensors for Identification of Bacterial Chemoreceptor Function.

Luu RA, Schomer RA, Brunton CN, Truong R, Ta AP, Tan WA, Parales JV, Wang YJ, Huo YW, Liu SJ, Ditty JL, Stewart V, Parales RE.

Appl Environ Microbiol. 2019 Oct 30;85(22). pii: e01626-19. doi: 10.1128/AEM.01626-19. Print 2019 Nov 15.

PMID:
31492670
3.

Chemotaxis of Pseudomonas putida F1 to Alcohols Is Mediated by the Carboxylic Acid Receptor McfP.

Zhang X, Hughes JG, Subuyuj GA, Ditty JL, Parales RE.

Appl Environ Microbiol. 2019 Oct 30;85(22). pii: e01625-19. doi: 10.1128/AEM.01625-19. Print 2019 Nov 15.

PMID:
31471307
4.

Chemotaxis to Atypical Chemoattractants by Soil Bacteria.

Parales RE, Ditty JL.

Methods Mol Biol. 2018;1729:255-280. doi: 10.1007/978-1-4939-7577-8_21.

PMID:
29429097
5.

Pseudomonas putida F1 uses energy taxis to sense hydroxycinnamic acids.

Hughes JG, Zhang X, Parales JV, Ditty JL, Parales RE.

Microbiology. 2017 Oct;163(10):1490-1501. doi: 10.1099/mic.0.000533. Epub 2017 Sep 28.

6.

Bacterial chemotaxis to xenobiotic chemicals and naturally-occurring analogs.

Parales RE, Luu RA, Hughes JG, Ditty JL.

Curr Opin Biotechnol. 2015 Jun;33:318-26. doi: 10.1016/j.copbio.2015.03.017. Epub 2015 Apr 15. Review.

PMID:
25889452
7.

Integration of chemotaxis, transport and catabolism in Pseudomonas putida and identification of the aromatic acid chemoreceptor PcaY.

Luu RA, Kootstra JD, Nesteryuk V, Brunton CN, Parales JV, Ditty JL, Parales RE.

Mol Microbiol. 2015 Apr;96(1):134-47. doi: 10.1111/mmi.12929. Epub 2015 Feb 12.

8.

Cytosine chemoreceptor McpC in Pseudomonas putida F1 also detects nicotinic acid.

Parales RE, Nesteryuk V, Hughes JG, Luu RA, Ditty JL.

Microbiology. 2014 Dec;160(Pt 12):2661-2669. doi: 10.1099/mic.0.081968-0. Epub 2014 Oct 7.

9.

Pseudomonas putida F1 has multiple chemoreceptors with overlapping specificity for organic acids.

Parales RE, Luu RA, Chen GY, Liu X, Wu V, Lin P, Hughes JG, Nesteryuk V, Parales JV, Ditty JL.

Microbiology. 2013 Jun;159(Pt 6):1086-1096. doi: 10.1099/mic.0.065698-0. Epub 2013 Apr 25.

10.

Integrating grant-funded research into the undergraduate biology curriculum using IMG-ACT.

Ditty JL, Williams KM, Keller MM, Chen GY, Liu X, Parales RE.

Biochem Mol Biol Educ. 2013 Jan-Feb;41(1):16-23. doi: 10.1002/bmb.20662.

11.

Taxis of Pseudomonas putida F1 toward phenylacetic acid is mediated by the energy taxis receptor Aer2.

Luu RA, Schneider BJ, Ho CC, Nesteryuk V, Ngwesse SE, Liu X, Parales JV, Ditty JL, Parales RE.

Appl Environ Microbiol. 2013 Apr;79(7):2416-23. doi: 10.1128/AEM.03895-12. Epub 2013 Feb 1.

12.

Chemotaxis to furan compounds by furan-degrading Pseudomonas strains.

Nichols NN, Lunde TA, Graden KC, Hallock KA, Kowalchyk CK, Southern RM, Soskin EJ, Ditty JL.

Appl Environ Microbiol. 2012 Sep;78(17):6365-8. doi: 10.1128/AEM.01104-12. Epub 2012 Jun 22.

13.

Tetracycline photolysis in natural waters: loss of antibacterial activity.

Wammer KH, Slattery MT, Stemig AM, Ditty JL.

Chemosphere. 2011 Nov;85(9):1505-10. doi: 10.1016/j.chemosphere.2011.08.051. Epub 2011 Sep 28.

PMID:
21959143
14.

The itty-bitty time machine genetics of the cyanobacterial circadian clock.

Mackey SR, Golden SS, Ditty JL.

Adv Genet. 2011;74:13-53. doi: 10.1016/B978-0-12-387690-4.00002-7. Review.

15.

Incorporating genomics and bioinformatics across the life sciences curriculum.

Ditty JL, Kvaal CA, Goodner B, Freyermuth SK, Bailey C, Britton RA, Gordon SG, Heinhorst S, Reed K, Xu Z, Sanders-Lorenz ER, Axen S, Kim E, Johns M, Scott K, Kerfeld CA.

PLoS Biol. 2010 Aug 10;8(8):e1000448. doi: 10.1371/journal.pbio.1000448. No abstract available.

16.

Diversity of microbial toluene degradation pathways.

Parales RE, Parales JV, Pelletier DA, Ditty JL.

Adv Appl Microbiol. 2008;64:1-73, 2 p following 264. doi: 10.1016/S0065-2164(08)00401-2. Review. No abstract available.

PMID:
18485280
17.

Synthesis of novel oxazolidinone antimicrobial agents.

Ebner DC, Culhane JC, Winkelman TN, Haustein MD, Ditty JL, Ippoliti JT.

Bioorg Med Chem. 2008 Mar 1;16(5):2651-6. Epub 2007 Nov 19.

PMID:
18077175
18.

Specialized techniques for site-directed mutagenesis in cyanobacteria.

Clerico EM, Ditty JL, Golden SS.

Methods Mol Biol. 2007;362:155-71.

PMID:
17417008
19.

Detection of rhythmic bioluminescence from luciferase reporters in cyanobacteria.

Mackey SR, Ditty JL, Clerico EM, Golden SS.

Methods Mol Biol. 2007;362:115-29.

PMID:
17417005
20.

Stability of the Synechococcus elongatus PCC 7942 circadian clock under directed anti-phase expression of the kai genes.

Ditty JL, Canales SR, Anderson BE, Williams SB, Golden SS.

Microbiology. 2005 Aug;151(Pt 8):2605-2613. doi: 10.1099/mic.0.28030-0.

PMID:
16079339
21.

Laboratory evolution of catabolic enzymes and pathways.

Parales RE, Ditty JL.

Curr Opin Biotechnol. 2005 Jun;16(3):315-25. Review.

PMID:
15961033
22.

A cyanobacterial circadian timing mechanism.

Ditty JL, Williams SB, Golden SS.

Annu Rev Genet. 2003;37:513-43. Review.

PMID:
14616072
23.

Roles for sigma factors in global circadian regulation of the cyanobacterial genome.

Nair U, Ditty JL, Min H, Golden SS.

J Bacteriol. 2002 Jul;184(13):3530-8.

25.
27.

Identification of a chemotaxis gene region from Pseudomonas putida.

Ditty JL, Grimm AC, Harwood CS.

FEMS Microbiol Lett. 1998 Feb 15;159(2):267-73.

28.

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