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Items: 32

1.

Seasonal and algal diet-driven patterns of the digestive microbiota of the European abalone Haliotis tuberculata, a generalist marine herbivore.

Gobet A, Mest L, Perennou M, Dittami SM, Caralp C, Coulombet C, Huchette S, Roussel S, Michel G, Leblanc C.

Microbiome. 2018 Mar 27;6(1):60. doi: 10.1186/s40168-018-0430-7.

2.

Exploring the Cultivable Ectocarpus Microbiome.

KleinJan H, Jeanthon C, Boyen C, Dittami SM.

Front Microbiol. 2017 Dec 11;8:2456. doi: 10.3389/fmicb.2017.02456. eCollection 2017.

3.

Evolution and Expansion of the Prokaryote-Like Lipoxygenase Family in the Brown Alga Saccharina japonica.

Teng L, Han W, Fan X, Xu D, Zhang X, Dittami SM, Ye N.

Front Plant Sci. 2017 Nov 28;8:2018. doi: 10.3389/fpls.2017.02018. eCollection 2017.

4.

Detection of bacterial contaminants and hybrid sequences in the genome of the kelp Saccharina japonica using Taxoblast.

Dittami SM, Corre E.

PeerJ. 2017 Nov 17;5:e4073. doi: 10.7717/peerj.4073. eCollection 2017.

5.

Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta).

Brawley SH, Blouin NA, Ficko-Blean E, Wheeler GL, Lohr M, Goodson HV, Jenkins JW, Blaby-Haas CE, Helliwell KE, Chan CX, Marriage TN, Bhattacharya D, Klein AS, Badis Y, Brodie J, Cao Y, Collén J, Dittami SM, Gachon CMM, Green BR, Karpowicz SJ, Kim JW, Kudahl UJ, Lin S, Michel G, Mittag M, Olson BJSC, Pangilinan JL, Peng Y, Qiu H, Shu S, Singer JT, Smith AG, Sprecher BN, Wagner V, Wang W, Wang ZY, Yan J, Yarish C, Zäuner-Riek S, Zhuang Y, Zou Y, Lindquist EA, Grimwood J, Barry KW, Rokhsar DS, Schmutz J, Stiller JW, Grossman AR, Prochnik SE.

Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):E6361-E6370. doi: 10.1073/pnas.1703088114. Epub 2017 Jul 17.

6.

Transitions between marine and freshwater environments provide new clues about the origins of multicellular plants and algae.

Dittami SM, Heesch S, Olsen JL, Collén J.

J Phycol. 2017 Aug;53(4):731-745. doi: 10.1111/jpy.12547. Epub 2017 Jun 13. Review.

PMID:
28509401
7.

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks.

Prigent S, Frioux C, Dittami SM, Thiele S, Larhlimi A, Collet G, Gutknecht F, Got J, Eveillard D, Bourdon J, Plewniak F, Tonon T, Siegel A.

PLoS Comput Biol. 2017 Jan 27;13(1):e1005276. doi: 10.1371/journal.pcbi.1005276. eCollection 2017 Jan.

8.

Host-microbe interactions as a driver of acclimation to salinity gradients in brown algal cultures.

Dittami SM, Duboscq-Bidot L, Perennou M, Gobet A, Corre E, Boyen C, Tonon T.

ISME J. 2016 Jan;10(1):51-63. doi: 10.1038/ismej.2015.104. Epub 2015 Jun 26.

9.

A haploid system of sex determination in the brown alga Ectocarpus sp.

Ahmed S, Cock JM, Pessia E, Luthringer R, Cormier A, Robuchon M, Sterck L, Peters AF, Dittami SM, Corre E, Valero M, Aury JM, Roze D, Van de Peer Y, Bothwell J, Marais GA, Coelho SM.

Curr Biol. 2014 Sep 8;24(17):1945-57. doi: 10.1016/j.cub.2014.07.042. Epub 2014 Aug 28.

10.

Genome and metabolic network of "Candidatus Phaeomarinobacter ectocarpi" Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae.

Dittami SM, Barbeyron T, Boyen C, Cambefort J, Collet G, Delage L, Gobet A, Groisillier A, Leblanc C, Michel G, Scornet D, Siegel A, Tapia JE, Tonon T.

Front Genet. 2014 Jul 25;5:241. doi: 10.3389/fgene.2014.00241. eCollection 2014.

11.

The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond.

Prigent S, Collet G, Dittami SM, Delage L, Ethis de Corny F, Dameron O, Eveillard D, Thiele S, Cambefort J, Boyen C, Siegel A, Tonon T.

Plant J. 2014 Oct;80(2):367-81. doi: 10.1111/tpj.12627. Epub 2014 Aug 27.

12.

Transcriptomic and metabolomic analysis of copper stress acclimation in Ectocarpus siliculosus highlights signaling and tolerance mechanisms in brown algae.

Ritter A, Dittami SM, Goulitquer S, Correa JA, Boyen C, Potin P, Tonon T.

BMC Plant Biol. 2014 May 1;14:116. doi: 10.1186/1471-2229-14-116.

13.

A metabolic approach to study algal-bacterial interactions in changing environments.

Dittami SM, Eveillard D, Tonon T.

Mol Ecol. 2014 Apr;23(7):1656-60. doi: 10.1111/mec.12670. Epub 2014 Mar 13.

PMID:
24447216
14.

Microarray testing for the presence of toxic algae monitoring programme in Galicia (NW Spain).

Dittami SM, Pazos Y, Laspra M, Medlin LK.

Environ Sci Pollut Res Int. 2013 Oct;20(10):6778-93. doi: 10.1007/s11356-012-1295-0. Epub 2013 May 11.

PMID:
23660802
15.

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.

Collén J, Porcel B, Carré W, Ball SG, Chaparro C, Tonon T, Barbeyron T, Michel G, Noel B, Valentin K, Elias M, Artiguenave F, Arun A, Aury JM, Barbosa-Neto JF, Bothwell JH, Bouget FY, Brillet L, Cabello-Hurtado F, Capella-Gutiérrez S, Charrier B, Cladière L, Cock JM, Coelho SM, Colleoni C, Czjzek M, Da Silva C, Delage L, Denoeud F, Deschamps P, Dittami SM, Gabaldón T, Gachon CM, Groisillier A, Hervé C, Jabbari K, Katinka M, Kloareg B, Kowalczyk N, Labadie K, Leblanc C, Lopez PJ, McLachlan DH, Meslet-Cladiere L, Moustafa A, Nehr Z, Nyvall Collén P, Panaud O, Partensky F, Poulain J, Rensing SA, Rousvoal S, Samson G, Symeonidi A, Weissenbach J, Zambounis A, Wincker P, Boyen C.

Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5247-52. doi: 10.1073/pnas.1221259110. Epub 2013 Mar 15.

16.

Molecular probes for the detection and identification of ichthyotoxic marine microalgae of the genus Pseudochattonella (Dictyochophyceae, Ochrophyta).

Dittami SM, Riisberg I, Edvardsen B.

Environ Sci Pollut Res Int. 2013 Oct;20(10):6824-37. doi: 10.1007/s11356-012-1402-2. Epub 2013 Jan 30.

PMID:
23361173
17.

Seasonal dynamics of harmful algae in outer Oslofjorden monitored by microarray, qPCR, and microscopy.

Dittami SM, Hostyeva V, Egge ES, Kegel JU, Eikrem W, Edvardsen B.

Environ Sci Pollut Res Int. 2013 Oct;20(10):6719-32. doi: 10.1007/s11356-012-1392-0. Epub 2013 Jan 17.

PMID:
23325054
18.

Molecular probes and microarrays for the detection of toxic algae in the genera Dinophysis and Phalacroma (Dinophyta).

Edvardsen B, Dittami SM, Groben R, Brubak S, Escalera L, Rodríguez F, Reguera B, Chen J, Medlin LK.

Environ Sci Pollut Res Int. 2013 Oct;20(10):6733-50. doi: 10.1007/s11356-012-1403-1. Epub 2012 Dec 21.

19.

Genomes of extremophile crucifers: new platforms for comparative genomics and beyond.

Dittami SM, Tonon T.

Genome Biol. 2012 Aug 16;13(8):166. doi: 10.1186/gb-2012-13-8-166.

20.

CULTURE CONDITIONS INFLUENCE CELLULAR RNA CONTENT IN ICHTHYOTOXIC FLAGELLATES OF THE GENUS PSEUDOCHATTONELLA (DICTYOCHOPHYCEAE)(1).

Dittami SM, Edvardsen B.

J Phycol. 2012 Aug;48(4):1050-5. doi: 10.1111/j.1529-8817.2012.01183.x. Epub 2012 May 23.

PMID:
27009016
21.

GPR-Analyzer: a simple tool for quantitative analysis of hierarchical multispecies microarrays.

Dittami SM, Edvardsen B.

Environ Sci Pollut Res Int. 2013 Oct;20(10):6808-15. doi: 10.1007/s11356-012-1051-5. Epub 2012 Jul 6.

PMID:
22767354
22.

Towards deciphering dynamic changes and evolutionary mechanisms involved in the adaptation to low salinities in Ectocarpus (brown algae).

Dittami SM, Gravot A, Goulitquer S, Rousvoal S, Peters AF, Bouchereau A, Boyen C, Tonon T.

Plant J. 2012 Aug;71(3):366-77. doi: 10.1111/j.1365-313X.2012.04982.x. Epub 2012 Jun 11.

23.

Analysis of expressed sequence tags from the marine microalga Pseudochattonella farcimen (Dictyochophyceae).

Dittami SM, Riisberg I, John U, Orr RJ, Jakobsen KS, Edvardsen B.

Protist. 2012 Jan;163(1):143-61. doi: 10.1016/j.protis.2011.07.004. Epub 2011 Aug 5.

24.

Mannitol in six autotrophic stramenopiles and Micromonas.

Dittami SM, Aas HT, Paulsen BS, Boyen C, Edvardsen B, Tonon T.

Plant Signal Behav. 2011 Aug;6(8):1237-9. doi: 10.4161/psb.6.8.16404. Epub 2011 Aug 1.

25.

Integrative analysis of metabolite and transcript abundance during the short-term response to saline and oxidative stress in the brown alga Ectocarpus siliculosus.

Dittami SM, Gravot A, Renault D, Goulitquer S, Eggert A, Bouchereau A, Boyen C, Tonon T.

Plant Cell Environ. 2011 Apr;34(4):629-42. doi: 10.1111/j.1365-3040.2010.02268.x. Epub 2011 Feb 1.

26.

Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae).

Dittami SM, Proux C, Rousvoal S, Peters AF, Cock JM, Coppée JY, Boyen C, Tonon T.

BMC Mol Biol. 2011 Jan 13;12:2. doi: 10.1186/1471-2199-12-2.

27.

Chlorophyll-binding proteins revisited--a multigenic family of light-harvesting and stress proteins from a brown algal perspective.

Dittami SM, Michel G, Collén J, Boyen C, Tonon T.

BMC Evol Biol. 2010 Nov 26;10:365. doi: 10.1186/1471-2148-10-365.

28.

Mannitol-1-phosphate dehydrogenase activity in Ectocarpus siliculosus, a key role for mannitol synthesis in brown algae.

Rousvoal S, Groisillier A, Dittami SM, Michel G, Boyen C, Tonon T.

Planta. 2011 Feb;233(2):261-73. doi: 10.1007/s00425-010-1295-6. Epub 2010 Oct 28.

PMID:
20981555
29.

Diurnal oscillations of metabolite abundances and gene analysis provide new insights into central metabolic processes of the brown alga Ectocarpus siliculosus.

Gravot A, Dittami SM, Rousvoal S, Lugan R, Eggert A, Collén J, Boyen C, Bouchereau A, Tonon T.

New Phytol. 2010 Oct;188(1):98-110.

PMID:
20862781
30.

The Ectocarpus genome and the independent evolution of multicellularity in brown algae.

Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collén J, Corre E, Da Silva C, Delage L, Delaroque N, Dittami SM, Doulbeau S, Elias M, Farnham G, Gachon CM, Gschloessl B, Heesch S, Jabbari K, Jubin C, Kawai H, Kimura K, Kloareg B, Küpper FC, Lang D, Le Bail A, Leblanc C, Lerouge P, Lohr M, Lopez PJ, Martens C, Maumus F, Michel G, Miranda-Saavedra D, Morales J, Moreau H, Motomura T, Nagasato C, Napoli CA, Nelson DR, Nyvall-Collén P, Peters AF, Pommier C, Potin P, Poulain J, Quesneville H, Read B, Rensing SA, Ritter A, Rousvoal S, Samanta M, Samson G, Schroeder DC, Ségurens B, Strittmatter M, Tonon T, Tregear JW, Valentin K, von Dassow P, Yamagishi T, Van de Peer Y, Wincker P.

Nature. 2010 Jun 3;465(7298):617-21. doi: 10.1038/nature09016.

PMID:
20520714
31.

Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress.

Dittami SM, Scornet D, Petit JL, Ségurens B, Da Silva C, Corre E, Dondrup M, Glatting KH, König R, Sterck L, Rouzé P, Van de Peer Y, Cock JM, Boyen C, Tonon T.

Genome Biol. 2009;10(6):R66. doi: 10.1186/gb-2009-10-6-r66. Epub 2009 Jun 16.

32.

Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosus.

Le Bail A, Dittami SM, de Franco PO, Rousvoal S, Cock MJ, Tonon T, Charrier B.

BMC Mol Biol. 2008 Aug 18;9:75. doi: 10.1186/1471-2199-9-75.

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