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Items: 43

1.

The 6xABRE synthetic promoter enables the spatiotemporal analysis of ABA-mediated transcriptional regulation.

Wu R, Duan L, Pruneda-Paz J, Oh DH, Pound MP, Kay SA, Dinneny JR.

Plant Physiol. 2018 Jun 8. pii: pp.00401.2018. doi: 10.1104/pp.18.00401. [Epub ahead of print]

2.

Organization out of disorder: liquid-liquid phase separation in plants.

Cuevas-Velazquez CL, Dinneny JR.

Curr Opin Plant Biol. 2018 May 30;45(Pt A):68-74. doi: 10.1016/j.pbi.2018.05.005. [Epub ahead of print] Review.

3.

Q&A: How do gene regulatory networks control environmental responses in plants?

Sun Y, Dinneny JR.

BMC Biol. 2018 Apr 11;16(1):38. doi: 10.1186/s12915-018-0506-7.

4.

The FERONIA Receptor Kinase Maintains Cell-Wall Integrity during Salt Stress through Ca2+ Signaling.

Feng W, Kita D, Peaucelle A, Cartwright HN, Doan V, Duan Q, Liu MC, Maman J, Steinhorst L, Schmitz-Thom I, Yvon R, Kudla J, Wu HM, Cheung AY, Dinneny JR.

Curr Biol. 2018 Mar 5;28(5):666-675.e5. doi: 10.1016/j.cub.2018.01.023. Epub 2018 Feb 15.

5.

Growth is required for perception of water availability to pattern root branches in plants.

Robbins NE 2nd, Dinneny JR.

Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E822-E831. doi: 10.1073/pnas.1710709115. Epub 2018 Jan 9.

6.

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, Gonzales M, Grotewold E, Gutierrez R, Kramer U, Krouk G, Ma S, Markelz RJC, Megraw M, Meyers BC, Murray JAH, Provart NJ, Rhee S, Smith R, Spalding EP, Taylor C, Teal TK, Torii KU, Town C, Vaughn M, Vierstra R, Ware D, Wilkins O, Williams C, Brady SM.

Plant Physiol. 2017 Dec;175(4):1499-1509. doi: 10.1104/pp.17.01490. No abstract available.

PMID:
29208732
7.

Understanding and engineering plant form.

Brophy JAN, LaRue T, Dinneny JR.

Semin Cell Dev Biol. 2018 Jul;79:68-77. doi: 10.1016/j.semcdb.2017.08.051. Epub 2017 Aug 31. Review.

8.

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria.

Feldman MJ, Paul RE, Banan D, Barrett JF, Sebastian J, Yee MC, Jiang H, Lipka AE, Brutnell TP, Dinneny JR, Leakey ADB, Baxter I.

PLoS Genet. 2017 Jun 23;13(6):e1006841. doi: 10.1371/journal.pgen.1006841. eCollection 2017 Jun.

9.

A microbially derived tyrosine-sulfated peptide mimics a plant peptide hormone.

Pruitt RN, Joe A, Zhang W, Feng W, Stewart V, Schwessinger B, Dinneny JR, Ronald PC.

New Phytol. 2017 Jul;215(2):725-736. doi: 10.1111/nph.14609. Epub 2017 May 30.

10.

Root hydrotropism is controlled via a cortex-specific growth mechanism.

Dietrich D, Pang L, Kobayashi A, Fozard JA, Boudolf V, Bhosale R, Antoni R, Nguyen T, Hiratsuka S, Fujii N, Miyazawa Y, Bae TW, Wells DM, Owen MR, Band LR, Dyson RJ, Jensen OE, King JR, Tracy SR, Sturrock CJ, Mooney SJ, Roberts JA, Bhalerao RP, Dinneny JR, Rodriguez PL, Nagatani A, Hosokawa Y, Baskin TI, Pridmore TP, De Veylder L, Takahashi H, Bennett MJ.

Nat Plants. 2017 May 8;3:17057. doi: 10.1038/nplants.2017.57.

PMID:
28481327
11.

Growing Out of Stress: The Role of Cell- and Organ-Scale Growth Control in Plant Water-Stress Responses.

Feng W, Lindner H, Robbins NE 2nd, Dinneny JR.

Plant Cell. 2016 Aug;28(8):1769-82. doi: 10.1105/tpc.16.00182. Epub 2016 Aug 8. Review.

12.

Grasses suppress shoot-borne roots to conserve water during drought.

Sebastian J, Yee MC, Goudinho Viana W, Rellán-Álvarez R, Feldman M, Priest HD, Trontin C, Lee T, Jiang H, Baxter I, Mockler TC, Hochholdinger F, Brutnell TP, Dinneny JR.

Proc Natl Acad Sci U S A. 2016 Aug 2;113(31):8861-6. doi: 10.1073/pnas.1604021113. Epub 2016 Jul 15.

13.

Plant scientists: GM technology is safe.

Fahlgren N, Bart R, Herrera-Estrella L, Rellán-Álvarez R, Chitwood DH, Dinneny JR.

Science. 2016 Feb 19;351(6275):824. doi: 10.1126/science.351.6275.824-a. Epub 2016 Feb 18. No abstract available.

PMID:
26912883
14.

Environmental Control of Root System Biology.

Rellán-Álvarez R, Lobet G, Dinneny JR.

Annu Rev Plant Biol. 2016 Apr 29;67:619-42. doi: 10.1146/annurev-arplant-043015-111848. Epub 2016 Feb 22. Review.

PMID:
26905656
15.

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems.

Rellán-Álvarez R, Lobet G, Lindner H, Pradier PL, Sebastian J, Yee MC, Geng Y, Trontin C, LaRue T, Schrager-Lavelle A, Haney CH, Nieu R, Maloof J, Vogel JP, Dinneny JR.

Elife. 2015 Aug 19;4. doi: 10.7554/eLife.07597.

16.

Low Sugar Is Not Always Good: Impact of Specific O-Glycan Defects on Tip Growth in Arabidopsis.

Velasquez SM, Marzol E, Borassi C, Pol-Fachin L, Ricardi MM, Mangano S, Juarez SP, Salter JD, Dorosz JG, Marcus SE, Knox JP, Dinneny JR, Iusem ND, Verli H, Estevez JM.

Plant Physiol. 2015 Jul;168(3):808-13. doi: 10.1104/pp.114.255521. Epub 2015 May 5. No abstract available.

17.

The divining root: moisture-driven responses of roots at the micro- and macro-scale.

Robbins NE 2nd, Dinneny JR.

J Exp Bot. 2015 Apr;66(8):2145-54. doi: 10.1093/jxb/eru496. Epub 2015 Jan 22. Review.

18.

Traversing organizational scales in plant salt-stress responses.

Dinneny JR.

Curr Opin Plant Biol. 2015 Feb;23:70-5. doi: 10.1016/j.pbi.2014.10.009. Epub 2014 Nov 15. Review.

PMID:
25449729
19.

Salt-stress regulation of root system growth and architecture in Arabidopsis seedlings.

Duan L, Sebastian J, Dinneny JR.

Methods Mol Biol. 2015;1242:105-22. doi: 10.1007/978-1-4939-1902-4_10. Review.

PMID:
25408448
20.

Live imaging of root hairs.

Velasquez SM, Dinneny JR, Estevez JM.

Methods Mol Biol. 2015;1242:59-66. doi: 10.1007/978-1-4939-1902-4_5.

PMID:
25408443
21.

Beyond the barrier: communication in the root through the endodermis.

Robbins NE 2nd, Trontin C, Duan L, Dinneny JR.

Plant Physiol. 2014 Oct;166(2):551-9. doi: 10.1104/pp.114.244871. Epub 2014 Aug 14. Review.

22.

Plant roots use a patterning mechanism to position lateral root branches toward available water.

Bao Y, Aggarwal P, Robbins NE 2nd, Sturrock CJ, Thompson MC, Tan HQ, Tham C, Duan L, Rodriguez PL, Vernoux T, Mooney SJ, Bennett MJ, Dinneny JR.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):9319-24. doi: 10.1073/pnas.1400966111. Epub 2014 Jun 9.

23.

Methods to promote germination of dormant Setaria viridis seeds.

Sebastian J, Wong MK, Tang E, Dinneny JR.

PLoS One. 2014 Apr 18;9(4):e95109. doi: 10.1371/journal.pone.0095109. eCollection 2014.

24.

Circular RNA is expressed across the eukaryotic tree of life.

Wang PL, Bao Y, Yee MC, Barrett SP, Hogan GJ, Olsen MN, Dinneny JR, Brown PO, Salzman J.

PLoS One. 2014 Mar 7;9(6):e90859. doi: 10.1371/journal.pone.0090859. eCollection 2014. Erratum in: PLoS One. 2014;9(4):e95116.

25.

A gateway with a guard: how the endodermis regulates growth through hormone signaling.

Dinneny JR.

Plant Sci. 2014 Jan;214:14-9. doi: 10.1016/j.plantsci.2013.09.009. Epub 2013 Sep 26. Review.

PMID:
24268159
26.

A robust family of Golden Gate Agrobacterium vectors for plant synthetic biology.

Emami S, Yee MC, Dinneny JR.

Front Plant Sci. 2013 Sep 2;4:339. doi: 10.3389/fpls.2013.00339. eCollection 2013.

27.

A spatio-temporal understanding of growth regulation during the salt stress response in Arabidopsis.

Geng Y, Wu R, Wee CW, Xie F, Wei X, Chan PM, Tham C, Duan L, Dinneny JR.

Plant Cell. 2013 Jun;25(6):2132-54. doi: 10.1105/tpc.113.112896. Epub 2013 Jun 28.

28.

Endodermal ABA signaling promotes lateral root quiescence during salt stress in Arabidopsis seedlings.

Duan L, Dietrich D, Ng CH, Chan PM, Bhalerao R, Bennett MJ, Dinneny JR.

Plant Cell. 2013 Jan;25(1):324-41. doi: 10.1105/tpc.112.107227. Epub 2013 Jan 22.

29.

Tools for high-spatial and temporal-resolution analysis of environmental responses in plants.

Wee CW, Dinneny JR.

Biotechnol Lett. 2010 Oct;32(10):1361-71. doi: 10.1007/s10529-010-0307-8. Epub 2010 May 26. Review.

PMID:
20502944
30.

Analysis of the salt-stress response at cell-type resolution.

Dinneny JR.

Plant Cell Environ. 2010 Apr;33(4):543-51. doi: 10.1111/j.1365-3040.2009.02055.x. Epub 2009 Oct 14. Review.

31.

Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment.

Orlando DA, Brady SM, Koch JD, Dinneny JR, Benfey PN.

Methods Mol Biol. 2009;553:57-77. doi: 10.1007/978-1-60327-563-7_4. Review.

32.

Cell identity mediates the response of Arabidopsis roots to abiotic stress.

Dinneny JR, Long TA, Wang JY, Jung JW, Mace D, Pointer S, Barron C, Brady SM, Schiefelbein J, Benfey PN.

Science. 2008 May 16;320(5878):942-5. doi: 10.1126/science.1153795. Epub 2008 Apr 24.

33.

Plant stem cell niches: standing the test of time.

Dinneny JR, Benfey PN.

Cell. 2008 Feb 22;132(4):553-7. doi: 10.1016/j.cell.2008.02.001.

34.

Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light.

Filiault DL, Wessinger CA, Dinneny JR, Lutes J, Borevitz JO, Weigel D, Chory J, Maloof JN.

Proc Natl Acad Sci U S A. 2008 Feb 26;105(8):3157-62. doi: 10.1073/pnas.0712174105. Epub 2008 Feb 14. Erratum in: Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8482.

35.

A high-resolution root spatiotemporal map reveals dominant expression patterns.

Brady SM, Orlando DA, Lee JY, Wang JY, Koch J, Dinneny JR, Mace D, Ohler U, Benfey PN.

Science. 2007 Nov 2;318(5851):801-6.

36.

NUBBIN and JAGGED define stamen and carpel shape in Arabidopsis.

Dinneny JR, Weigel D, Yanofsky MF.

Development. 2006 May;133(9):1645-55. Epub 2006 Mar 22. Erratum in: Development. 2005 Jun;133(11):2285.

37.

Stem cell research goes underground: the RETINOBLASTOMA-RELATED gene in root development.

Dinneny JR, Benfey PN.

Cell. 2005 Dec 29;123(7):1180-2. Review.

38.

A genetic framework for fruit patterning in Arabidopsis thaliana.

Dinneny JR, Weigel D, Yanofsky MF.

Development. 2005 Nov;132(21):4687-96. Epub 2005 Sep 28.

39.

Drawing lines and borders: how the dehiscent fruit of Arabidopsis is patterned.

Dinneny JR, Yanofsky MF.

Bioessays. 2005 Jan;27(1):42-9. Review.

PMID:
15612035
40.

Floral development: an ABC gene chips in downstream.

Dinneny JR, Yanofsky MF.

Curr Biol. 2004 Oct 5;14(19):R840-1. Review.

41.

Vascular patterning: xylem or phloem?

Dinneny JR, Yanofsky MF.

Curr Biol. 2004 Feb 3;14(3):R112-4. Review.

42.

The role of JAGGED in shaping lateral organs.

Dinneny JR, Yadegari R, Fischer RL, Yanofsky MF, Weigel D.

Development. 2004 Mar;131(5):1101-10.

43.

Modes of intercellular transcription factor movement in the Arabidopsis apex.

Wu X, Dinneny JR, Crawford KM, Rhee Y, Citovsky V, Zambryski PC, Weigel D.

Development. 2003 Aug;130(16):3735-45.

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