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Items: 18

1.

eXamine: Visualizing annotated networks in Cytoscape.

Spohr P, Dinkla K, Klau GW, El-Kebir M.

Version 2. F1000Res. 2018 Apr 30 [revised 2018 Jan 1];7:519. doi: 10.12688/f1000research.14612.2. eCollection 2018.

2.

ProteomeVis: a web app for exploration of protein properties from structure to sequence evolution across organisms' proteomes.

Razban RM, Gilson AI, Durfee N, Strobelt H, Dinkla K, Choi JM, Pfister H, Shakhnovich EI.

Bioinformatics. 2018 Jul 13. doi: 10.1093/bioinformatics/bty516. [Epub ahead of print] No abstract available.

PMID:
30010795
3.

ProteomeVis: a web app for exploration of protein properties from structure to sequence evolution across organisms' proteomes.

Razban RM, Gilson AI, Durfee N, Strobelt H, Dinkla K, Choi JM, Pfister H, Shakhnovich EI.

Bioinformatics. 2018 May 8. doi: 10.1093/bioinformatics/bty370. [Epub ahead of print]

PMID:
29741573
4.

Screenit: Visual Analysis of Cellular Screens.

Dinkla K, Strobelt H, Genest B, Reiling S, Borowsky M, Pfister H.

IEEE Trans Vis Comput Graph. 2017 Jan;23(1):591-600.

PMID:
27875174
5.

eXamine: exploring annotated modules in networks.

Dinkla K, El-Kebir M, Bucur CI, Siderius M, Smit MJ, Westenberg MA, Klau GW.

BMC Bioinformatics. 2014 Jul 10;15:201. doi: 10.1186/1471-2105-15-201.

6.

Compressed Adjacency Matrices: Untangling Gene Regulatory Networks.

Dinkla K, Westenberg MA, van Wijk JJ.

IEEE Trans Vis Comput Graph. 2012 Dec;18(12):2457-66. doi: 10.1109/TVCG.2012.208.

PMID:
26357154
7.

Differences in the aromatic domain of homologous streptococcal fibronectin-binding proteins trigger different cell invasion mechanisms and survival rates.

Rohde M, Graham RM, Branitzki-Heinemann K, Borchers P, Preuss C, Schleicher I, Zähner D, Talay SR, Fulde M, Dinkla K, Chhatwal GS.

Cell Microbiol. 2011 Mar;13(3):450-68. doi: 10.1111/j.1462-5822.2010.01547.x. Epub 2010 Nov 24. Erratum in: Cell Microbiol. 2012 Jan;14(1):147-8.

PMID:
21054741
8.

Biological functions of GCS3, a novel plasminogen-binding protein of Streptococcus dysgalactiae ssp. equisimilis.

Bergmann R, Dinkla K, Nitsche-Schmitz DP, Graham RM, Lüttge M, Sanderson-Smith ML, Nerlich A, Rohde M, Chhatwal GS.

Int J Med Microbiol. 2011 Feb;301(2):157-64. doi: 10.1016/j.ijmm.2010.06.007. Epub 2010 Oct 15.

PMID:
20951639
9.

Identification of active variants of PARF in human pathogenic group C and group G streptococci leads to an amended description of its consensus motif.

Barroso V, Rohde M, Davies MR, Gillen CM, Nitsche-Schmitz DP, Dinkla K, Chhatwal GS.

Int J Med Microbiol. 2009 Dec;299(8):547-53. doi: 10.1016/j.ijmm.2009.04.004. Epub 2009 Jun 11.

PMID:
19520603
10.

Crucial role of the CB3-region of collagen IV in PARF-induced acute rheumatic fever.

Dinkla K, Talay SR, Mörgelin M, Graham RM, Rohde M, Nitsche-Schmitz DP, Chhatwal GS.

PLoS One. 2009;4(3):e4666. doi: 10.1371/journal.pone.0004666. Epub 2009 Mar 2.

11.

Evaluation of the potential of animal streptococcal isolates belonging to serogroups C and G to elicit acute rheumatic fever.

Barroso V, Rohde M, Dinkla K, Chhatwal GS.

Am J Vet Res. 2008 Sep;69(9):1183-7. doi: 10.2460/ajvr.69.9.1183.

PMID:
18764692
12.

M protein-mediated plasminogen binding is essential for the virulence of an invasive Streptococcus pyogenes isolate.

Sanderson-Smith ML, Dinkla K, Cole JN, Cork AJ, Maamary PG, McArthur JD, Chhatwal GS, Walker MJ.

FASEB J. 2008 Aug;22(8):2715-22. doi: 10.1096/fj.07-105643. Epub 2008 May 8.

PMID:
18467595
13.

DNase Sda1 provides selection pressure for a switch to invasive group A streptococcal infection.

Walker MJ, Hollands A, Sanderson-Smith ML, Cole JN, Kirk JK, Henningham A, McArthur JD, Dinkla K, Aziz RK, Kansal RG, Simpson AJ, Buchanan JT, Chhatwal GS, Kotb M, Nizet V.

Nat Med. 2007 Aug;13(8):981-5. Epub 2007 Jul 15.

PMID:
17632528
14.
15.

Identification of a streptococcal octapeptide motif involved in acute rheumatic fever.

Dinkla K, Nitsche-Schmitz DP, Barroso V, Reissmann S, Johansson HM, Frick IM, Rohde M, Chhatwal GS.

J Biol Chem. 2007 Jun 29;282(26):18686-93. Epub 2007 Apr 23.

16.

P159 is a proteolytically processed, surface adhesin of Mycoplasma hyopneumoniae: defined domains of P159 bind heparin and promote adherence to eukaryote cells.

Burnett TA, Dinkla K, Rohde M, Chhatwal GS, Uphoff C, Srivastava M, Cordwell SJ, Geary S, Liao X, Minion FC, Walker MJ, Djordjevic SP.

Mol Microbiol. 2006 May;60(3):669-86.

17.

Rheumatic fever-associated Streptococcus pyogenes isolates aggregate collagen.

Dinkla K, Rohde M, Jansen WT, Kaplan EL, Chhatwal GS, Talay SR.

J Clin Invest. 2003 Jun;111(12):1905-12.

18.

Streptococcus pyogenes recruits collagen via surface-bound fibronectin: a novel colonization and immune evasion mechanism.

Dinkla K, Rohde M, Jansen WT, Carapetis JR, Chhatwal GS, Talay SR.

Mol Microbiol. 2003 Feb;47(3):861-9.

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