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Rational design of ultra-small photoluminescent copper nano-dots loaded PLGA micro-vessels for targeted co-delivery of natural piperine molecules for the treatment for epilepsy.

Zhu D, Zhang WG, Nie XD, Ding SW, Zhang DT, Yang L.

J Photochem Photobiol B. 2020 Jan 23;205:111805. doi: 10.1016/j.jphotobiol.2020.111805. [Epub ahead of print]


A Bunyavirus-Inducible Ubiquitin Ligase Targets RNA Polymerase IV for Degradation during Viral Pathogenesis in Rice.

Zhang C, Wei Y, Xu L, Wu KC, Yang L, Shi CN, Yang GY, Chen D, Yu FF, Xie Q, Li Y, Ding SW, Wu JG.

Mol Plant. 2020 Feb 19. pii: S1674-2052(20)30040-X. doi: 10.1016/j.molp.2020.02.010. [Epub ahead of print]


lncRNA Sensing of a Viral Suppressor of RNAi Activates Non-canonical Innate Immune Signaling in Drosophila.

Zhang L, Xu W, Gao X, Li W, Qi S, Guo D, Ajayi OE, Ding SW, Wu Q.

Cell Host Microbe. 2020 Jan 8;27(1):115-128.e8. doi: 10.1016/j.chom.2019.12.006.


RNA-Seq revealed that infection with white tip nematodes could downregulate rice photosynthetic genes.

Wang HL, Yang SH, Lv M, Ding SW, Li JY, Xu CL, Xie H.

Funct Integr Genomics. 2019 Nov 12. doi: 10.1007/s10142-019-00717-9. [Epub ahead of print]


A Sensitized Genetic Screen to Identify Novel Components and Regulators of the Host Antiviral RNA Interference Pathway.

Guo Z, Wang XB, Li WX, Ding SW.

Methods Mol Biol. 2019;2028:215-229. doi: 10.1007/978-1-4939-9635-3_12.


Editorial overview: Engineering for viral resistance.

Ding SW.

Curr Opin Virol. 2018 Oct;32:iii. doi: 10.1016/j.coviro.2018.11.004. No abstract available.


Small RNA-based antimicrobial immunity.

Guo Z, Li Y, Ding SW.

Nat Rev Immunol. 2019 Jan;19(1):31-44. doi: 10.1038/s41577-018-0071-x. Review.


Antiviral RNA interference in mammals.

Ding SW, Han Q, Wang J, Li WX.

Curr Opin Immunol. 2018 Oct;54:109-114. doi: 10.1016/j.coi.2018.06.010. Epub 2018 Jul 17. Review.


Molecular identification and functional characterization of the cathepsin B gene (Ab-cb-1) in the plant parasitic nematode Aphelenchoides besseyi.

Wang HL, Cheng X, Ding SW, Wang DW, Chen C, Xu CL, Xie H.

PLoS One. 2018 Jun 29;13(6):e0199935. doi: 10.1371/journal.pone.0199935. eCollection 2018.


Correction for Gaulke et al., "Intestinal Epithelial Barrier Disruption through Altered Mucosal MicroRNA Expression in Human Immunodeficiency Virus and Simian Immunodeficiency Virus Infections".

Gaulke CA, Porter M, Han YH, Sankaran-Walters S, Grishina I, George MD, Dang AT, Ding SW, Jiang G, Korf I, Dandekar S.

J Virol. 2018 May 29;92(12). pii: e00548-18. doi: 10.1128/JVI.00548-18. Print 2018 Jun 15. No abstract available.


Identification and function of FAR protein family genes from a transcriptome analysis of Aphelenchoides besseyi.

Wang DW, Xu CL, Ding SW, Huang X, Cheng X, Zhang C, Chen C, Xie H.

Bioinformatics. 2018 Sep 1;34(17):2936-2943. doi: 10.1093/bioinformatics/bty209.


Templating Antiviral RNAi in Insects.

Han Y, Wu Q, Ding SW.

Cell Host Microbe. 2018 Mar 14;23(3):290-292. doi: 10.1016/j.chom.2018.02.010.


Arabidopsis ENOR3 regulates RNAi-mediated antiviral defense.

Gao H, Yang M, Yang H, Qin Y, Zhu B, Xu G, Xie C, Wu D, Zhang X, Li W, Yan J, Song S, Qi T, Ding SW, Xie D.

J Genet Genomics. 2018 Jan 20;45(1):33-40. doi: 10.1016/j.jgg.2017.11.005. Epub 2017 Dec 24.


Elderly population have a decreased aneurysmal subarachnoid hemorrhage incidence rate than Middle aged population: a descriptive analysis of 8,144 cases in mainland China.

Wáng YXJ, Zhang L, Zhao L, He J, Zeng XJ, Liu H, Yang YJ, Ding SW, Xu ZF, He YM, Yang L, Sun L, Mu KJ, Wang BS, Xu XH, Ji ZY, Liu JH, Fang JZ, Hou R, Fan F, Peng GM, Zhu YQ, Ju SH, Poon WS.

Br J Neurosurg. 2018 Apr;32(2):165-171. doi: 10.1080/02688697.2018.1426724. Epub 2018 Jan 17.


Identification of a New Host Factor Required for Antiviral RNAi and Amplification of Viral siRNAs.

Guo Z, Wang XB, Wang Y, Li WX, Gal-On A, Ding SW.

Plant Physiol. 2018 Feb;176(2):1587-1597. doi: 10.1104/pp.17.01370. Epub 2017 Nov 28.


Reply to 'Questioning antiviral RNAi in mammals'.

Jeffrey KL, Li Y, Ding SW.

Nat Microbiol. 2017 Apr 25;2:17053. doi: 10.1038/nmicrobiol.2017.53. No abstract available.


Caenorhabditis elegans RIG-I Homolog Mediates Antiviral RNA Interference Downstream of Dicer-Dependent Biogenesis of Viral Small Interfering RNAs.

Coffman SR, Lu J, Guo X, Zhong J, Jiang H, Broitman-Maduro G, Li WX, Lu R, Maduro M, Ding SW.

mBio. 2017 Mar 21;8(2). pii: e00264-17. doi: 10.1128/mBio.00264-17.


Lipid flippases promote antiviral silencing and the biogenesis of viral and host siRNAs in Arabidopsis.

Guo Z, Lu J, Wang X, Zhan B, Li W, Ding SW.

Proc Natl Acad Sci U S A. 2017 Feb 7;114(6):1377-1382. doi: 10.1073/pnas.1614204114. Epub 2017 Jan 25.


Viral effector protein manipulates host hormone signaling to attract insect vectors.

Wu D, Qi T, Li WX, Tian H, Gao H, Wang J, Ge J, Yao R, Ren C, Wang XB, Liu Y, Kang L, Ding SW, Xie D.

Cell Res. 2017 Mar;27(3):402-415. doi: 10.1038/cr.2017.2. Epub 2017 Jan 6.


Induction and suppression of antiviral RNA interference by influenza A virus in mammalian cells.

Li Y, Basavappa M, Lu J, Dong S, Cronkite DA, Prior JT, Reinecker HC, Hertzog P, Han Y, Li WX, Cheloufi S, Karginov FV, Ding SW, Jeffrey KL.

Nat Microbiol. 2016 Dec 5;2:16250. doi: 10.1038/nmicrobiol.2016.250.


Differential expression of cucumber RNA-dependent RNA polymerase 1 genes during antiviral defence and resistance.

Leibman D, Kravchik M, Wolf D, Haviv S, Weissberg M, Ophir R, Paris HS, Palukaitis P, Ding SW, Gaba V, Gal-On A.

Mol Plant Pathol. 2018 Feb;19(2):300-312. doi: 10.1111/mpp.12518. Epub 2017 Feb 8.


Genome-wide identification of endogenous RNA-directed DNA methylation loci associated with abundant 21-nucleotide siRNAs in Arabidopsis.

Zhao JH, Fang YY, Duan CG, Fang RX, Ding SW, Guo HS.

Sci Rep. 2016 Oct 27;6:36247. doi: 10.1038/srep36247.


Cotton plants export microRNAs to inhibit virulence gene expression in a fungal pathogen.

Zhang T, Zhao YL, Zhao JH, Wang S, Jin Y, Chen ZQ, Fang YY, Hua CL, Ding SW, Guo HS.

Nat Plants. 2016 Sep 26;2(10):16153. doi: 10.1038/nplants.2016.153.


Identification of viruses and viroids by next-generation sequencing and homology-dependent and homology-independent algorithms.

Wu Q, Ding SW, Zhang Y, Zhu S.

Annu Rev Phytopathol. 2015;53:425-44. doi: 10.1146/annurev-phyto-080614-120030. Epub 2015 May 29. Review.


RIG-I-dependent antiviral immunity is effective against an RNA virus encoding a potent suppressor of RNAi.

Fan X, Dong S, Li Y, Ding SW, Wang M.

Biochem Biophys Res Commun. 2015 May 15;460(4):1035-40. doi: 10.1016/j.bbrc.2015.03.145. Epub 2015 Apr 3.


Discovery of replicating circular RNAs by RNA-seq and computational algorithms.

Zhang Z, Qi S, Tang N, Zhang X, Chen S, Zhu P, Ma L, Cheng J, Xu Y, Lu M, Wang H, Ding SW, Li S, Wu Q.

PLoS Pathog. 2014 Dec 11;10(12):e1004553. doi: 10.1371/journal.ppat.1004553. eCollection 2014 Dec.


Antiviral RNA silencing in mammals: no news is not good news.

Ding SW, Voinnet O.

Cell Rep. 2014 Nov 6;9(3):795-7. doi: 10.1016/j.celrep.2014.10.029. No abstract available.


Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis.

Cao M, Du P, Wang X, Yu YQ, Qiu YH, Li W, Gal-On A, Zhou C, Li Y, Ding SW.

Proc Natl Acad Sci U S A. 2014 Oct 7;111(40):14613-8. doi: 10.1073/pnas.1407131111. Epub 2014 Sep 8.


Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads.

Jiang H, Lei R, Ding SW, Zhu S.

BMC Bioinformatics. 2014 Jun 12;15:182. doi: 10.1186/1471-2105-15-182.


Intestinal epithelial barrier disruption through altered mucosal microRNA expression in human immunodeficiency virus and simian immunodeficiency virus infections.

Gaulke CA, Porter M, Han YH, Sankaran-Walters S, Grishina I, George MD, Dang AT, Ding SW, Jiang G, Korf I, Dandekar S.

J Virol. 2014 Jun;88(11):6268-80. doi: 10.1128/JVI.00097-14. Epub 2014 Mar 26. Erratum in: J Virol. 2018 May 29;92(12):.


Antiviral RNA interference in mammalian cells.

Maillard PV, Ciaudo C, Marchais A, Li Y, Jay F, Ding SW, Voinnet O.

Science. 2013 Oct 11;342(6155):235-8. doi: 10.1126/science.1241930.


RNA interference functions as an antiviral immunity mechanism in mammals.

Li Y, Lu J, Han Y, Fan X, Ding SW.

Science. 2013 Oct 11;342(6155):231-4. doi: 10.1126/science.1241911.


Homologous RIG-I-like helicase proteins direct RNAi-mediated antiviral immunity in C. elegans by distinct mechanisms.

Guo X, Zhang R, Wang J, Ding SW, Lu R.

Proc Natl Acad Sci U S A. 2013 Oct 1;110(40):16085-90. doi: 10.1073/pnas.1307453110. Epub 2013 Sep 16.


Homology-independent discovery of replicating pathogenic circular RNAs by deep sequencing and a new computational algorithm.

Wu Q, Wang Y, Cao M, Pantaleo V, Burgyan J, Li WX, Ding SW.

Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3938-43. doi: 10.1073/pnas.1117815109. Epub 2012 Feb 15.


Suppression of Arabidopsis ARGONAUTE1-mediated slicing, transgene-induced RNA silencing, and DNA methylation by distinct domains of the Cucumber mosaic virus 2b protein.

Duan CG, Fang YY, Zhou BJ, Zhao JH, Hou WN, Zhu H, Ding SW, Guo HS.

Plant Cell. 2012 Jan;24(1):259-74. doi: 10.1105/tpc.111.092718. Epub 2012 Jan 13.


Virus-derived siRNAs and piRNAs in immunity and pathogenesis.

Ding SW, Lu R.

Curr Opin Virol. 2011 Dec;1(6):533-44. doi: 10.1016/j.coviro.2011.10.028. Review.


RNA-based immunity terminates viral infection in adult Drosophila in the absence of viral suppression of RNA interference: characterization of viral small interfering RNA populations in wild-type and mutant flies.

Han YH, Luo YJ, Wu Q, Jovel J, Wang XH, Aliyari R, Han C, Li WX, Ding SW.

J Virol. 2011 Dec;85(24):13153-63. doi: 10.1128/JVI.05518-11. Epub 2011 Sep 28.


The 21-nucleotide, but not 22-nucleotide, viral secondary small interfering RNAs direct potent antiviral defense by two cooperative argonautes in Arabidopsis thaliana.

Wang XB, Jovel J, Udomporn P, Wang Y, Wu Q, Li WX, Gasciolli V, Vaucheret H, Ding SW.

Plant Cell. 2011 Apr;23(4):1625-38. doi: 10.1105/tpc.110.082305. Epub 2011 Apr 5.


RNA-based antiviral immunity.

Ding SW.

Nat Rev Immunol. 2010 Sep;10(9):632-44. doi: 10.1038/nri2824. Epub 2010 Aug 13. Review.


Viral suppressors of RNA-based viral immunity: host targets.

Wu Q, Wang X, Ding SW.

Cell Host Microbe. 2010 Jul 22;8(1):12-5. doi: 10.1016/j.chom.2010.06.009. Review.


siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis.

Yu B, Bi L, Zhai J, Agarwal M, Li S, Wu Q, Ding SW, Meyers BC, Vaucheret H, Chen X.

Nucleic Acids Res. 2010 Sep;38(17):5844-50. doi: 10.1093/nar/gkq348. Epub 2010 May 6.


Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems.

Parameswaran P, Sklan E, Wilkins C, Burgon T, Samuel MA, Lu R, Ansel KM, Heissmeyer V, Einav S, Jackson W, Doukas T, Paranjape S, Polacek C, dos Santos FB, Jalili R, Babrzadeh F, Gharizadeh B, Grimm D, Kay M, Koike S, Sarnow P, Ronaghi M, Ding SW, Harris E, Chow M, Diamond MS, Kirkegaard K, Glenn JS, Fire AZ.

PLoS Pathog. 2010 Feb 12;6(2):e1000764. doi: 10.1371/journal.ppat.1000764.


Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs.

Wu Q, Luo Y, Lu R, Lau N, Lai EC, Li WX, Ding SW.

Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1606-11. doi: 10.1073/pnas.0911353107. Epub 2010 Jan 4.


RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana.

Wang XB, Wu Q, Ito T, Cillo F, Li WX, Chen X, Yu JL, Ding SW.

Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):484-9. doi: 10.1073/pnas.0904086107. Epub 2009 Dec 4.


Possible new RNA intermediate in RNA silencing.

Elkashef S, Ding SW.

Nat Chem Biol. 2009 May;5(5):278-9. doi: 10.1038/nchembio0509-278. No abstract available.


An RIG-I-Like RNA helicase mediates antiviral RNAi downstream of viral siRNA biogenesis in Caenorhabditis elegans.

Lu R, Yigit E, Li WX, Ding SW.

PLoS Pathog. 2009 Feb;5(2):e1000286. doi: 10.1371/journal.ppat.1000286. Epub 2009 Feb 6.


RNA-based viral immunity initiated by the Dicer family of host immune receptors.

Aliyari R, Ding SW.

Immunol Rev. 2009 Jan;227(1):176-88. doi: 10.1111/j.1600-065X.2008.00722.x. Review.


[Prevention and management of complications associated with iliac crest bone graft].

Zhao FT, Wang C, Lü AJ, Ding SW, Dong YW, Zhao JQ, Zhang SQ, He FY.

Zhongguo Gu Shang. 2008 Sep;21(9):708. Chinese. No abstract available.


Chimeric cDNA Sequences from Citrus tristeza virus Confer RNA Silencing-Mediated Resistance in Transgenic Nicotiana benthamiana Plants.

Roy G, Sudarshana MR, Ullman DE, Ding SW, Dandekar AM, Falk BW.

Phytopathology. 2006 Aug;96(8):819-27. doi: 10.1094/PHYTO-96-0819.

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