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Items: 18

1.

One-Cell Doubling Evaluation by Living Arrays of Yeast, ODELAY!

Herricks T, Dilworth DJ, Mast FD, Li S, Smith JJ, Ratushny AV, Aitchison JD.

G3 (Bethesda). 2017 Jan 5;7(1):279-288. doi: 10.1534/g3.116.037044.

2.

Peroxins Pex30 and Pex29 Dynamically Associate with Reticulons to Regulate Peroxisome Biogenesis from the Endoplasmic Reticulum.

Mast FD, Jamakhandi A, Saleem RA, Dilworth DJ, Rogers RS, Rachubinski RA, Aitchison JD.

J Biol Chem. 2016 Jul 22;291(30):15408-27. doi: 10.1074/jbc.M116.728154. Epub 2016 Apr 29.

3.

Rapid, optimized interactomic screening.

Hakhverdyan Z, Domanski M, Hough LE, Oroskar AA, Oroskar AR, Keegan S, Dilworth DJ, Molloy KR, Sherman V, Aitchison JD, Fenyö D, Chait BT, Jensen TH, Rout MP, LaCava J.

Nat Methods. 2015 Jun;12(6):553-60. doi: 10.1038/nmeth.3395. Epub 2015 May 4.

4.

Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins.

Mirzaei H, Knijnenburg TA, Kim B, Robinson M, Picotti P, Carter GW, Li S, Dilworth DJ, Eng JK, Aitchison JD, Shmulevich I, Galitski T, Aebersold R, Ranish J.

Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3645-50. doi: 10.1073/pnas.1216918110. Epub 2013 Feb 6.

5.

Global analysis of condition-specific subcellular protein distribution and abundance.

Jung S, Smith JJ, von Haller PD, Dilworth DJ, Sitko KA, Miller LR, Saleem RA, Goodlett DR, Aitchison JD.

Mol Cell Proteomics. 2013 May;12(5):1421-35. doi: 10.1074/mcp.O112.019166. Epub 2013 Jan 24.

6.

COL4A1 mutations cause ocular dysgenesis, neuronal localization defects, and myopathy in mice and Walker-Warburg syndrome in humans.

Labelle-Dumais C, Dilworth DJ, Harrington EP, de Leau M, Lyons D, Kabaeva Z, Manzini MC, Dobyns WB, Walsh CA, Michele DE, Gould DB.

PLoS Genet. 2011 May;7(5):e1002062. doi: 10.1371/journal.pgen.1002062. Epub 2011 May 19.

7.

Genome-wide analysis of effectors of peroxisome biogenesis.

Saleem RA, Long-O'Donnell R, Dilworth DJ, Armstrong AM, Jamakhandi AP, Wan Y, Knijnenburg TA, Niemistö A, Boyle J, Rachubinski RA, Shmulevich I, Aitchison JD.

PLoS One. 2010 Aug 4;5(8):e11953. doi: 10.1371/journal.pone.0011953.

8.

QTIPS: a novel method of unsupervised determination of isotopic amino acid distribution in SILAC experiments.

Dilworth DJ, Saleem RA, Rogers RS, Mirzaei H, Boyle J, Aitchison JD.

J Am Soc Mass Spectrom. 2010 Aug;21(8):1417-22. doi: 10.1016/j.jasms.2010.04.002. Epub 2010 Apr 8.

9.

Integrated phosphoproteomics analysis of a signaling network governing nutrient response and peroxisome induction.

Saleem RA, Rogers RS, Ratushny AV, Dilworth DJ, Shannon PT, Shteynberg D, Wan Y, Moritz RL, Nesvizhskii AI, Rachubinski RA, Aitchison JD.

Mol Cell Proteomics. 2010 Sep;9(9):2076-88. doi: 10.1074/mcp.M000116-MCP201. Epub 2010 Apr 15.

10.

Developmental distribution of collagen IV isoforms and relevance to ocular diseases.

Bai X, Dilworth DJ, Weng YC, Gould DB.

Matrix Biol. 2009 May;28(4):194-201. doi: 10.1016/j.matbio.2009.02.004. Epub 2009 Mar 9.

11.

The mobile nucleoporin Nup2p and chromatin-bound Prp20p function in endogenous NPC-mediated transcriptional control.

Dilworth DJ, Tackett AJ, Rogers RS, Yi EC, Christmas RH, Smith JJ, Siegel AF, Chait BT, Wozniak RW, Aitchison JD.

J Cell Biol. 2005 Dec 19;171(6):955-65.

12.

Interactions between Mad1p and the nuclear transport machinery in the yeast Saccharomyces cerevisiae.

Scott RJ, Lusk CP, Dilworth DJ, Aitchison JD, Wozniak RW.

Mol Biol Cell. 2005 Sep;16(9):4362-74. Epub 2005 Jul 6.

13.

Proteomic and genomic characterization of chromatin complexes at a boundary.

Tackett AJ, Dilworth DJ, Davey MJ, O'Donnell M, Aitchison JD, Rout MP, Chait BT.

J Cell Biol. 2005 Apr 11;169(1):35-47.

14.

Nop53p is a novel nucleolar 60S ribosomal subunit biogenesis protein.

Sydorskyy Y, Dilworth DJ, Halloran B, Yi EC, Makhnevych T, Wozniak RW, Aitchison JD.

Biochem J. 2005 Jun 15;388(Pt 3):819-26.

15.

Intersection of the Kap123p-mediated nuclear import and ribosome export pathways.

Sydorskyy Y, Dilworth DJ, Yi EC, Goodlett DR, Wozniak RW, Aitchison JD.

Mol Cell Biol. 2003 Mar;23(6):2042-54.

16.

Transcriptome profiling to identify genes involved in peroxisome assembly and function.

Smith JJ, Marelli M, Christmas RH, Vizeacoumar FJ, Dilworth DJ, Ideker T, Galitski T, Dimitrov K, Rachubinski RA, Aitchison JD.

J Cell Biol. 2002 Jul 22;158(2):259-71. Epub 2002 Jul 22.

17.

The dynamics of karyopherin-mediated nuclear transport.

Marelli M, Dilworth DJ, Wozniak RW, Aitchison JD.

Biochem Cell Biol. 2001;79(5):603-12. Review.

PMID:
11716302
18.

Nup2p dynamically associates with the distal regions of the yeast nuclear pore complex.

Dilworth DJ, Suprapto A, Padovan JC, Chait BT, Wozniak RW, Rout MP, Aitchison JD.

J Cell Biol. 2001 Jun 25;153(7):1465-78.

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