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Items: 45

1.

Lassa virus activates myeloid dendritic cells but suppresses their ability to stimulate T cells.

Schaeffer J, Carnec X, Reynard S, Mateo M, Picard C, Pietrosemoli N, Dilliès MA, Baize S.

PLoS Pathog. 2018 Nov 12;14(11):e1007430. doi: 10.1371/journal.ppat.1007430. [Epub ahead of print]

2.

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation.

Krin E, Pierlé SA, Sismeiro O, Jagla B, Dillies MA, Varet H, Irazoki O, Campoy S, Rouy Z, Cruveiller S, Médigue C, Coppée JY, Mazel D.

BMC Genomics. 2018 May 21;19(1):373. doi: 10.1186/s12864-018-4716-8.

3.

Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut.

Raquin V, Merkling SH, Gausson V, Moltini-Conclois I, Frangeul L, Varet H, Dillies MA, Saleh MC, Lambrechts L.

PLoS Negl Trop Dis. 2017 Dec 19;11(12):e0006152. doi: 10.1371/journal.pntd.0006152. eCollection 2017 Dec.

4.

Erratum to: Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans.

Koechler S, Cleiss-Arnold J, Proux C, Sismeiro O, Dillies MA, Goulhen-Chollet F, Hommais F, Lièvremont D, Arsène-Ploetze F, Coppé JY, Bertin PN.

BMC Microbiol. 2017 Mar 28;17(1):74. doi: 10.1186/s12866-017-0976-8. No abstract available.

5.

Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite.

Farasin J, Koechler S, Varet H, Deschamps J, Dillies MA, Proux C, Erhardt M, Huber A, Jagla B, Briandet R, Coppée JY, Arsène-Ploetze F.

Microb Biotechnol. 2017 Jul;10(4):789-803. doi: 10.1111/1751-7915.12556. Epub 2017 Feb 7.

6.

Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment.

Weber C, Koutero M, Dillies MA, Varet H, Lopez-Camarillo C, Coppée JY, Hon CC, Guillén N.

Sci Rep. 2016 Oct 21;6:35852. doi: 10.1038/srep35852.

7.

MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets.

Hourdel V, Volant S, O'Brien DP, Chenal A, Chamot-Rooke J, Dillies MA, Brier S.

Bioinformatics. 2016 Nov 15;32(22):3413-3419. Epub 2016 Jul 13.

8.

GH16 and GH81 family β-(1,3)-glucanases in Aspergillus fumigatus are essential for conidial cell wall morphogenesis.

Mouyna I, Aimanianda V, Hartl L, Prevost MC, Sismeiro O, Dillies MA, Jagla B, Legendre R, Coppee JY, Latgé JP.

Cell Microbiol. 2016 Sep;18(9):1285-93. doi: 10.1111/cmi.12630. Epub 2016 Jul 12.

PMID:
27306610
9.

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data.

Varet H, Brillet-Guéguen L, Coppée JY, Dillies MA.

PLoS One. 2016 Jun 9;11(6):e0157022. doi: 10.1371/journal.pone.0157022. eCollection 2016.

10.

Bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection.

Quereda JJ, Dussurget O, Nahori MA, Ghozlane A, Volant S, Dillies MA, Regnault B, Kennedy S, Mondot S, Villoing B, Cossart P, Pizarro-Cerda J.

Proc Natl Acad Sci U S A. 2016 May 17;113(20):5706-11. doi: 10.1073/pnas.1523899113. Epub 2016 May 2.

11.

Comparative analysis of viral RNA signatures on different RIG-I-like receptors.

Sanchez David RY, Combredet C, Sismeiro O, Dillies MA, Jagla B, Coppée JY, Mura M, Guerbois Galla M, Despres P, Tangy F, Komarova AV.

Elife. 2016 Mar 24;5:e11275. doi: 10.7554/eLife.11275.

12.

Bacteriophages to reduce gut carriage of antibiotic resistant uropathogens with low impact on microbiota composition.

Galtier M, De Sordi L, Maura D, Arachchi H, Volant S, Dillies MA, Debarbieux L.

Environ Microbiol. 2016 Jul;18(7):2237-45. doi: 10.1111/1462-2920.13284. Epub 2016 Apr 28.

PMID:
26971586
13.

Overexpression of the Heterochromatinization Factor BAHD1 in HEK293 Cells Differentially Reshapes the DNA Methylome on Autosomes and X Chromosome.

Libertini E, Lebreton A, Lakisic G, Dillies MA, Beck S, Coppée JY, Cossart P, Bierne H.

Front Genet. 2015 Dec 1;6:339. doi: 10.3389/fgene.2015.00339. eCollection 2015.

14.

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns.

Balloy V, Varet H, Dillies MA, Proux C, Jagla B, Coppée JY, Tabary O, Corvol H, Chignard M, Guillot L.

PLoS One. 2015 Oct 20;10(10):e0140979. doi: 10.1371/journal.pone.0140979. eCollection 2015.

15.

Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas.

Freel KC, Krueger MC, Farasin J, Brochier-Armanet C, Barbe V, Andrès J, Cholley PE, Dillies MA, Jagla B, Koechler S, Leva Y, Magdelenat G, Plewniak F, Proux C, Coppée JY, Bertin PN, Heipieper HJ, Arsène-Ploetze F.

PLoS One. 2015 Sep 30;10(9):e0139011. doi: 10.1371/journal.pone.0139011. eCollection 2015.

16.

Single nucleotide resolution RNA-seq uncovers new regulatory mechanisms in the opportunistic pathogen Streptococcus agalactiae.

Rosinski-Chupin I, Sauvage E, Sismeiro O, Villain A, Da Cunha V, Caliot ME, Dillies MA, Trieu-Cuot P, Bouloc P, Lartigue MF, Glaser P.

BMC Genomics. 2015 May 30;16:419. doi: 10.1186/s12864-015-1583-4.

17.

Repressor activity of the RpoS/σS-dependent RNA polymerase requires DNA binding.

Lévi-Meyrueis C, Monteil V, Sismeiro O, Dillies MA, Kolb A, Monot M, Dupuy B, Duarte SS, Jagla B, Coppée JY, Beraud M, Norel F.

Nucleic Acids Res. 2015 Feb 18;43(3):1456-68. doi: 10.1093/nar/gku1379. Epub 2015 Jan 10.

18.

Differences in gene transcriptomic pattern of Plasmodium falciparum in children with cerebral malaria and asymptomatic carriers.

Almelli T, Nuel G, Bischoff E, Aubouy A, Elati M, Wang CW, Dillies MA, Coppée JY, Ayissi GN, Basco LK, Rogier C, Ndam NT, Deloron P, Tahar R.

PLoS One. 2014 Dec 5;9(12):e114401. doi: 10.1371/journal.pone.0114401. eCollection 2014.

19.

Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella.

Lévi-Meyrueis C, Monteil V, Sismeiro O, Dillies MA, Monot M, Jagla B, Coppée JY, Dupuy B, Norel F.

PLoS One. 2014 May 8;9(5):e96918. doi: 10.1371/journal.pone.0096918. eCollection 2014.

20.

A putative regulatory genetic locus modulates virulence in the pathogen Leptospira interrogans.

Eshghi A, Becam J, Lambert A, Sismeiro O, Dillies MA, Jagla B, Wunder EA Jr, Ko AI, Coppee JY, Goarant C, Picardeau M.

Infect Immun. 2014 Jun;82(6):2542-52. doi: 10.1128/IAI.01803-14. Epub 2014 Mar 31.

21.

Identification of the virulence landscape essential for Entamoeba histolytica invasion of the human colon.

Thibeaux R, Weber C, Hon CC, Dillies MA, Avé P, Coppée JY, Labruyère E, Guillén N.

PLoS Pathog. 2013;9(12):e1003824. doi: 10.1371/journal.ppat.1003824. Epub 2013 Dec 19.

22.

Identification and characterization of the genetic changes responsible for the characteristic smooth-to-rough morphotype alterations of clinically persistent Mycobacterium abscessus.

Pawlik A, Garnier G, Orgeur M, Tong P, Lohan A, Le Chevalier F, Sapriel G, Roux AL, Conlon K, Honoré N, Dillies MA, Ma L, Bouchier C, Coppée JY, Gaillard JL, Gordon SV, Loftus B, Brosch R, Herrmann JL.

Mol Microbiol. 2013 Nov;90(3):612-29. doi: 10.1111/mmi.12387. Epub 2013 Sep 17.

23.

Massive activation of archaeal defense genes during viral infection.

Quax TE, Voet M, Sismeiro O, Dillies MA, Jagla B, Coppée JY, Sezonov G, Forterre P, van der Oost J, Lavigne R, Prangishvili D.

J Virol. 2013 Aug;87(15):8419-28. doi: 10.1128/JVI.01020-13. Epub 2013 May 22.

24.

Identification of RNA partners of viral proteins in infected cells.

Komarova AV, Combredet C, Sismeiro O, Dillies MA, Jagla B, Sanchez David RY, Vabret N, Coppée JY, Vidalain PO, Tangy F.

RNA Biol. 2013 Jun;10(6):944-56. doi: 10.4161/rna.24453. Epub 2013 Apr 1.

25.

Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.

Andres J, Arsène-Ploetze F, Barbe V, Brochier-Armanet C, Cleiss-Arnold J, Coppée JY, Dillies MA, Geist L, Joublin A, Koechler S, Lassalle F, Marchal M, Médigue C, Muller D, Nesme X, Plewniak F, Proux C, Ramírez-Bahena MH, Schenowitz C, Sismeiro O, Vallenet D, Santini JM, Bertin PN.

Genome Biol Evol. 2013;5(5):934-53. doi: 10.1093/gbe/evt061.

26.

Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica.

Hon CC, Weber C, Sismeiro O, Proux C, Koutero M, Deloger M, Das S, Agrahari M, Dillies MA, Jagla B, Coppee JY, Bhattacharya A, Guillen N.

Nucleic Acids Res. 2013 Feb 1;41(3):1936-52. doi: 10.1093/nar/gks1271. Epub 2012 Dec 20.

27.

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis.

Dillies MA, Rau A, Aubert J, Hennequet-Antier C, Jeanmougin M, Servant N, Keime C, Marot G, Castel D, Estelle J, Guernec G, Jagla B, Jouneau L, Laloë D, Le Gall C, Schaëffer B, Le Crom S, Guedj M, Jaffrézic F; French StatOmique Consortium.

Brief Bioinform. 2013 Nov;14(6):671-83. doi: 10.1093/bib/bbs046. Epub 2012 Sep 17.

PMID:
22988256
28.

Docosahexaenoic acid inhibits Helicobacter pylori growth in vitro and mice gastric mucosa colonization.

Correia M, Michel V, Matos AA, Carvalho P, Oliveira MJ, Ferreira RM, Dillies MA, Huerre M, Seruca R, Figueiredo C, Machado JC, Touati E.

PLoS One. 2012;7(4):e35072. doi: 10.1371/journal.pone.0035072. Epub 2012 Apr 17.

29.

Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses.

Jourdren L, Bernard M, Dillies MA, Le Crom S.

Bioinformatics. 2012 Jun 1;28(11):1542-3. doi: 10.1093/bioinformatics/bts165. Epub 2012 Apr 5.

PMID:
22492314
30.

Endoplasmic reticulum stress-sensing mechanism is activated in Entamoeba histolytica upon treatment with nitric oxide.

Santi-Rocca J, Smith S, Weber C, Pineda E, Hon CC, Saavedra E, Olivos-García A, Rousseau S, Dillies MA, Coppée JY, Guillén N.

PLoS One. 2012;7(2):e31777. doi: 10.1371/journal.pone.0031777. Epub 2012 Feb 24.

31.

Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans.

Cleiss-Arnold J, Koechler S, Proux C, Fardeau ML, Dillies MA, Coppee JY, Arsène-Ploetze F, Bertin PN.

BMC Genomics. 2010 Dec 17;11:709. doi: 10.1186/1471-2164-11-709.

32.

In silico comparison of Yersinia pestis and Yersinia pseudotuberculosis transcriptomes reveals a higher expression level of crucial virulence determinants in the plague bacillus.

Chauvaux S, Dillies MA, Marceau M, Rosso ML, Rousseau S, Moszer I, Simonet M, Carniel E.

Int J Med Microbiol. 2011 Feb;301(2):105-16. doi: 10.1016/j.ijmm.2010.08.013. Epub 2010 Oct 15.

PMID:
20951640
33.

From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma.

Thiberge JM, Boursaux-Eude C, Lehours P, Dillies MA, Creno S, Coppée JY, Rouy Z, Lajus A, Ma L, Burucoa C, Ruskoné-Foumestraux A, Courillon-Mallet A, De Reuse H, Boneca IG, Lamarque D, Mégraud F, Delchier JC, Médigue C, Bouchier C, Labigne A, Raymond J.

BMC Genomics. 2010 Jun 10;11:368. doi: 10.1186/1471-2164-11-368.

34.

Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans.

Koechler S, Cleiss-Arnold J, Proux C, Sismeiro O, Dillies MA, Goulhen-Chollet F, Hommais F, Lièvremont D, Arsène-Ploetze F, Coppée JY, Bertin PN.

BMC Microbiol. 2010 Feb 18;10:53. doi: 10.1186/1471-2180-10-53. Erratum in: BMC Microbiol. 2017 Mar 28;17 (1):74.

35.

Nonpathogenic SIV infection of African green monkeys induces a strong but rapidly controlled type I IFN response.

Jacquelin B, Mayau V, Targat B, Liovat AS, Kunkel D, Petitjean G, Dillies MA, Roques P, Butor C, Silvestri G, Giavedoni LD, Lebon P, Barré-Sinoussi F, Benecke A, Müller-Trutwin MC.

J Clin Invest. 2009 Dec;119(12):3544-55. doi: 10.1172/JCI40093.

36.

FlexiChip package: an universal microarray with a dedicated analysis software for high-thoughput SNPs detection linked to anti-malarial drug resistance.

Steenkeste N, Dillies MA, Khim N, Sismeiro O, Chy S, Lim P, Crameri A, Bouchier C, Mercereau-Puijalon O, Beck HP, Imwong M, Dondorp AM, Socheat D, Rogier C, Coppée JY, Ariey F.

Malar J. 2009 Oct 15;8:229. doi: 10.1186/1475-2875-8-229.

37.

The global regulator CodY regulates toxin gene expression in Bacillus anthracis and is required for full virulence.

van Schaik W, Château A, Dillies MA, Coppée JY, Sonenshein AL, Fouet A.

Infect Immun. 2009 Oct;77(10):4437-45. doi: 10.1128/IAI.00716-09. Epub 2009 Aug 3.

38.

Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression.

Rosso ML, Chauvaux S, Dessein R, Laurans C, Frangeul L, Lacroix C, Schiavo A, Dillies MA, Foulon J, Coppée JY, Médigue C, Carniel E, Simonet M, Marceau M.

BMC Microbiol. 2008 Dec 3;8:211. doi: 10.1186/1471-2180-8-211.

39.

Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate.

Natalang O, Bischoff E, Deplaine G, Proux C, Dillies MA, Sismeiro O, Guigon G, Bonnefoy S, Patarapotikul J, Mercereau-Puijalon O, Coppée JY, David PH.

BMC Genomics. 2008 Aug 18;9:388. doi: 10.1186/1471-2164-9-388.

40.

Transcriptome analysis of Yersinia pestis in human plasma: an approach for discovering bacterial genes involved in septicaemic plague.

Chauvaux S, Rosso ML, Frangeul L, Lacroix C, Labarre L, Schiavo A, Marceau M, Dillies MA, Foulon J, Coppée JY, Médigue C, Simonet M, Carniel E.

Microbiology. 2007 Sep;153(Pt 9):3112-24.

PMID:
17768254
41.

Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila.

Brüggemann H, Hagman A, Jules M, Sismeiro O, Dillies MA, Gouyette C, Kunst F, Steinert M, Heuner K, Coppée JY, Buchrieser C.

Cell Microbiol. 2006 Aug;8(8):1228-40.

PMID:
16882028
42.

Anti-inflammatory effect of Lactobacillus casei on Shigella-infected human intestinal epithelial cells.

Tien MT, Girardin SE, Regnault B, Le Bourhis L, Dillies MA, Coppée JY, Bourdet-Sicard R, Sansonetti PJ, Pédron T.

J Immunol. 2006 Jan 15;176(2):1228-37. Erratum in: J Immunol. 2006 Mar 15;176(6):3841.

43.

Magnetic resonance imaging of Klebsiella pneumoniae-induced pneumonia in mice.

Tournebize R, Doan BT, Dillies MA, Maurin S, Beloeil JC, Sansonetti PJ.

Cell Microbiol. 2006 Jan;8(1):33-43.

PMID:
16367864
44.

Transcriptome analysis of antigenic variation in Plasmodium falciparum--var silencing is not dependent on antisense RNA.

Ralph SA, Bischoff E, Mattei D, Sismeiro O, Dillies MA, Guigon G, Coppee JY, David PH, Scherf A.

Genome Biol. 2005;6(11):R93. Epub 2005 Oct 31.

45.

Global transcriptional characterization of SP and MP cells from the myogenic C2C12 cell line: effect of FGF6.

Decraene C, Benchaouir R, Dillies MA, Israeli D, Bortoli S, Rochon C, Rameau P, Pitaval A, Tronik-Le Roux D, Danos O, Gidrol X, Garcia L, Piétu G.

Physiol Genomics. 2005 Oct 17;23(2):132-49. Epub 2005 Jul 20.

PMID:
16033864

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