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Items: 1 to 50 of 354

1.

NASCI AHA Young Investigator awards 2018.

Abbara S, Dill K, Agarwal P, Edwards R, White C, Ordovas K.

Int J Cardiovasc Imaging. 2019 Sep 10. doi: 10.1007/s10554-019-01650-5. [Epub ahead of print] No abstract available.

PMID:
31506854
2.

Minimal constraints for maximum caliber analysis of dissipative steady-state systems.

Agozzino L, Dill K.

Phys Rev E. 2019 Jul;100(1-1):010105. doi: 10.1103/PhysRevE.100.010105.

PMID:
31499924
3.

Opposing pressures of speed and efficiency guide the evolution of molecular machines.

Wagoner JA, Dill KA.

Mol Biol Evol. 2019 Aug 20. pii: msz190. doi: 10.1093/molbev/msz190. [Epub ahead of print]

PMID:
31432071
4.

NMR-assisted protein structure prediction with MELDxMD.

Robertson JC, Nassar R, Liu C, Brini E, Dill KA, Perez A.

Proteins. 2019 Jul 26. doi: 10.1002/prot.25788. [Epub ahead of print]

PMID:
31350773
5.

Patient-Friendly Summary of the ACR Appropriateness Criteria: Radiologic Management of Central Venous Access.

Savo R, Dill KE.

J Am Coll Radiol. 2019 Sep;16(9 Pt A):e41. doi: 10.1016/j.jacr.2019.05.006. Epub 2019 May 28. No abstract available.

PMID:
31150602
6.

Patient-Friendly Summary of the ACR Appropriateness Criteria: Lower Extremity Arterial Revascularization-Post-Therapy Imaging.

Rybicki F Jr, Dill KE.

J Am Coll Radiol. 2019 Jul;16(7):e31. doi: 10.1016/j.jacr.2019.01.019. Epub 2019 May 16. No abstract available.

PMID:
31092357
7.

ACR Appropriateness Criteria® Abdominal Aortic Aneurysm Follow-up (Without Repair).

Expert Panel on Vascular Imaging:, Collard M, Sutphin PD, Kalva SP, Majdalany BS, Collins JD, Eldrup-Jorgensen J, Francois CJ, Ganguli S, Gunn AJ, Kendi AT, Khaja MS, Obara P, Reis SP, Vijay K, Dill KE.

J Am Coll Radiol. 2019 May;16(5S):S2-S6. doi: 10.1016/j.jacr.2019.02.005.

PMID:
31054747
8.

ACR Appropriateness Criteria® Nonatherosclerotic Peripheral Arterial Disease.

Expert Panels on Vascular Imaging:, Francois CJ, Skulborstad EP, Kalva SP, Majdalany BS, Collins JD, Eldrup-Jorgensen J, Ferencik M, Ganguli S, Kendi AT, Khaja MS, Obara P, Ptak T, Reis SP, Sutphin PD, Dill KE.

J Am Coll Radiol. 2019 May;16(5S):S174-S183. doi: 10.1016/j.jacr.2019.02.026.

PMID:
31054743
9.

Predicting Protein Dimer Structures Using MELD × MD.

Brini E, Kozakov D, Dill KA.

J Chem Theory Comput. 2019 May 14;15(5):3381-3389. doi: 10.1021/acs.jctc.8b01208. Epub 2019 Apr 5.

PMID:
30908034
10.

Controlling the viscosities of antibody solutions through control of their binding sites.

Kastelic M, Dill KA, Kalyuzhnyi YV, Vlachy V.

J Mol Liq. 2018 Nov 15;270:234-242. doi: 10.1016/j.molliq.2017.11.106. Epub 2017 Nov 21.

PMID:
30906093
11.

Mechanisms for achieving high speed and efficiency in biomolecular machines.

Wagoner JA, Dill KA.

Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):5902-5907. doi: 10.1073/pnas.1812149116. Epub 2019 Mar 8.

12.

Building Markov state models using optimal transport theory.

Dixit PD, Dill KA.

J Chem Phys. 2019 Feb 7;150(5):054105. doi: 10.1063/1.5086681.

PMID:
30736685
13.

Water Is a Cagey Liquid.

Urbic T, Dill KA.

J Am Chem Soc. 2018 Dec 12;140(49):17106-17113. doi: 10.1021/jacs.8b08856. Epub 2018 Dec 3.

PMID:
30461279
14.

Monte Carlo on the manifold and MD refinement for binding pose prediction of protein-ligand complexes: 2017 D3R Grand Challenge.

Ignatov M, Liu C, Alekseenko A, Sun Z, Padhorny D, Kotelnikov S, Kazennov A, Grebenkin I, Kholodov Y, Kolosvari I, Perez A, Dill K, Kozakov D.

J Comput Aided Mol Des. 2019 Jan;33(1):119-127. doi: 10.1007/s10822-018-0176-0. Epub 2018 Nov 12.

PMID:
30421350
15.

MELD × MD Folds Nonthreadables, Giving Native Structures and Populations.

Robertson JC, Perez A, Dill KA.

J Chem Theory Comput. 2018 Dec 11;14(12):6734-6740. doi: 10.1021/acs.jctc.8b00886. Epub 2018 Nov 21.

PMID:
30407805
16.

ACR Appropriateness Criteria® Suspected Lower Extremity Deep Vein Thrombosis.

Expert Panel on Vascular Imaging:, Hanley M, Steigner ML, Ahmed O, Azene EM, Bennett SJ, Chandra A, Desjardins B, Gage KL, Ginsburg M, Mauro DM, Oliva IB, Ptak T, Strax R, Verma N, Dill KE.

J Am Coll Radiol. 2018 Nov;15(11S):S413-S417. doi: 10.1016/j.jacr.2018.09.028.

PMID:
30392609
17.

ACR Appropriateness Criteria® Imaging of Mesenteric Ischemia.

Expert Panels on Vascular Imaging and Gastrointestinal Imaging:, Ginsburg M, Obara P, Lambert DL, Hanley M, Steigner ML, Camacho MA, Chandra A, Chang KJ, Gage KL, Peterson CM, Ptak T, Verma N, Kim DH, Carucci LR, Dill KE.

J Am Coll Radiol. 2018 Nov;15(11S):S332-S340. doi: 10.1016/j.jacr.2018.09.018.

PMID:
30392602
18.

Protein evolution speed depends on its stability and abundance and on chaperone concentrations.

Agozzino L, Dill KA.

Proc Natl Acad Sci U S A. 2018 Sep 11;115(37):9092-9097. doi: 10.1073/pnas.1810194115. Epub 2018 Aug 27.

19.

How Do Chaperones Protect a Cell's Proteins from Oxidative Damage?

Santra M, Dill KA, de Graff AMR.

Cell Syst. 2018 Jun 27;6(6):743-751.e3. doi: 10.1016/j.cels.2018.05.001. Epub 2018 Jun 6.

20.

Autobiography of Ken A. Dill.

Dill KA.

J Phys Chem B. 2018 May 31;122(21):5263-5266. doi: 10.1021/acs.jpcb.8b02469. No abstract available.

PMID:
29847956
21.

Colleagues of Ken A. Dill.

Dill KA.

J Phys Chem B. 2018 May 31;122(21):5267-5268. doi: 10.1021/acs.jpcb.8b02468. No abstract available.

PMID:
29847955
22.

Selected Publications of Ken A. Dill.

Dill KA.

J Phys Chem B. 2018 May 31;122(21):5269-5277. doi: 10.1021/acs.jpcb.8b02467. No abstract available.

PMID:
29847954
23.

ACR Appropriateness Criteria® Suspected Thoracic Aortic Aneurysm.

Expert Panel on Vascular Imaging:, Bennett SJ, Dill KE, Hanley M, Ahmed O, Desjardins B, Gage KL, Ginsburg M, Khoynezhad A, Oliva IB, Steigner ML, Strax R, Verma N, Rybicki FJ.

J Am Coll Radiol. 2018 May;15(5S):S208-S214. doi: 10.1016/j.jacr.2018.03.031.

PMID:
29724424
24.

MELD-Path Efficiently Computes Conformational Transitions, Including Multiple and Diverse Paths.

Perez A, Sittel F, Stock G, Dill K.

J Chem Theory Comput. 2018 Apr 10;14(4):2109-2116. doi: 10.1021/acs.jctc.7b01294. Epub 2018 Mar 21.

PMID:
29547695
25.

Analytical theory of the hydrophobic effect of solutes in water.

Urbic T, Dill KA.

Phys Rev E. 2017 Sep;96(3-1):032101. doi: 10.1103/PhysRevE.96.032101. Epub 2017 Sep 1.

26.

Caliber Corrected Markov Modeling (C2M2): Correcting Equilibrium Markov Models.

Dixit PD, Dill KA.

J Chem Theory Comput. 2018 Feb 13;14(2):1111-1119. doi: 10.1021/acs.jctc.7b01126. Epub 2018 Jan 26.

PMID:
29323898
27.

Perspective: Maximum caliber is a general variational principle for dynamical systems.

Dixit PD, Wagoner J, Weistuch C, Pressé S, Ghosh K, Dill KA.

J Chem Phys. 2018 Jan 7;148(1):010901. doi: 10.1063/1.5012990.

PMID:
29306272
28.

ACR Appropriateness Criteria® Thoracic Aorta Interventional Planning and Follow-Up.

Expert Panels on Vascular Imaging and Interventional Radiology:, Bonci G, Steigner ML, Hanley M, Braun AR, Desjardins B, Gaba RC, Gage KL, Matsumura JS, Roselli EE, Sella DM, Strax R, Verma N, Weiss CR, Dill KE.

J Am Coll Radiol. 2017 Nov;14(11S):S570-S583. doi: 10.1016/j.jacr.2017.08.042.

PMID:
29101994
29.

ACR Appropriateness Criteria® Renovascular Hypertension.

Expert Panels on Urologic Imaging and Vascular Imaging:, Harvin HJ, Verma N, Nikolaidis P, Hanley M, Dogra VS, Goldfarb S, Gore JL, Savage SJ, Steigner ML, Strax R, Taffel MT, Wong-You-Cheong JJ, Yoo DC, Remer EM, Dill KE, Lockhart ME.

J Am Coll Radiol. 2017 Nov;14(11S):S540-S549. doi: 10.1016/j.jacr.2017.08.040.

PMID:
29101991
30.

ACR Appropriateness Criteria® Penetrating Neck Injury.

Expert Panels on Neurologic and Vascular Imaging:, Schroeder JW, Ptak T, Corey AS, Ahmed O, Biffl WL, Brennan JA, Chandra A, Ginsburg M, Hanley M, Hunt CH, Johnson MM, Kennedy TA, Patel ND, Policeni B, Reitman C, Steigner ML, Stiver SI, Strax R, Whitehead MT, Dill KE.

J Am Coll Radiol. 2017 Nov;14(11S):S500-S505. doi: 10.1016/j.jacr.2017.08.038.

PMID:
29101988
31.

ACR Appropriateness Criteria® Imaging of Deep Inferior Epigastric Arteries for Surgical Planning (Breast Reconstruction Surgery).

Expert Panel on Vascular Imaging:, Oliva IB, Day K, Dill KE, Hanley M, Ahmed O, Bennett SJ, Desjardins B, Gage KL, Ginsburg M, Hamawy AH, Steigner ML, Strax R, Verma N, Rybicki FJ.

J Am Coll Radiol. 2017 Nov;14(11S):S456-S461. doi: 10.1016/j.jacr.2017.08.047.

PMID:
29101984
32.

ACR Appropriateness Criteria® Imaging for Transcatheter Aortic Valve Replacement.

Expert Panel on Cardiac Imaging and Vascular Imaging:, Leipsic JA, Blanke P, Hanley M, Batlle JC, Bolen MA, Brown RKJ, Desjardins B, Eberhardt RT, Gornik HL, Hurwitz LM, Maniar H, Patel HJ, Sheybani EF, Steigner ML, Verma N, Abbara S, Rybicki FJ, Kirsch J, Dill KE.

J Am Coll Radiol. 2017 Nov;14(11S):S449-S455. doi: 10.1016/j.jacr.2017.08.046.

PMID:
29101983
33.

Accelerating physical simulations of proteins by leveraging external knowledge.

Perez A, Morrone JA, Dill KA.

Wiley Interdiscip Rev Comput Mol Sci. 2017 Sep-Oct;7(5). pii: e1309. doi: 10.1002/wcms.1309. Epub 2017 Apr 19.

34.

How Water's Properties Are Encoded in Its Molecular Structure and Energies.

Brini E, Fennell CJ, Fernandez-Serra M, Hribar-Lee B, Lukšič M, Dill KA.

Chem Rev. 2017 Oct 11;117(19):12385-12414. doi: 10.1021/acs.chemrev.7b00259. Epub 2017 Sep 26.

35.

Foldamer hypothesis for the growth and sequence differentiation of prebiotic polymers.

Guseva E, Zuckermann RN, Dill KA.

Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):E7460-E7468. doi: 10.1073/pnas.1620179114. Epub 2017 Aug 22.

36.

Why Do Fast-Growing Bacteria Enter Overflow Metabolism? Testing the Membrane Real Estate Hypothesis.

Szenk M, Dill KA, de Graff AMR.

Cell Syst. 2017 Aug 23;5(2):95-104. doi: 10.1016/j.cels.2017.06.005. Epub 2017 Jul 26. Review.

37.

ACR Appropriateness Criteria® Vascular Claudication-Assessment for Revascularization.

Expert Panel on Vascular Imaging:, Ahmed O, Hanley M, Bennett SJ, Chandra A, Desjardins B, Gage KL, Gerhard-Herman MD, Ginsburg M, Gornik HL, Oliva IB, Steigner ML, Strax R, Verma N, Rybicki FJ, Dill KE.

J Am Coll Radiol. 2017 May;14(5S):S372-S379. doi: 10.1016/j.jacr.2017.02.037. Review.

PMID:
28473094
38.

ACR Appropriateness Criteria® Nonvariceal Upper Gastrointestinal Bleeding.

Expert Panels on Vascular Imaging and Gastrointestinal Imaging:, Singh-Bhinder N, Kim DH, Holly BP, Johnson PT, Hanley M, Carucci LR, Cash BD, Chandra A, Gage KL, Lambert DL, Levy AD, Oliva IB, Peterson CM, Strax R, Rybicki FJ, Dill KE.

J Am Coll Radiol. 2017 May;14(5S):S177-S188. doi: 10.1016/j.jacr.2017.02.038. Review.

PMID:
28473074
39.

Bacterial proteostasis balances energy and chaperone utilization efficiently.

Santra M, Farrell DW, Dill KA.

Proc Natl Acad Sci U S A. 2017 Mar 28;114(13):E2654-E2661. doi: 10.1073/pnas.1620646114. Epub 2017 Mar 14.

40.

Computed Binding of Peptides to Proteins with MELD-Accelerated Molecular Dynamics.

Morrone JA, Perez A, MacCallum J, Dill KA.

J Chem Theory Comput. 2017 Feb 14;13(2):870-876. doi: 10.1021/acs.jctc.6b00977. Epub 2017 Jan 19.

PMID:
28042966
41.

Molecular Simulations Identify Binding Poses and Approximate Affinities of Stapled α-Helical Peptides to MDM2 and MDMX.

Morrone JA, Perez A, Deng Q, Ha SN, Holloway MK, Sawyer TK, Sherborne BS, Brown FK, Dill KA.

J Chem Theory Comput. 2017 Feb 14;13(2):863-869. doi: 10.1021/acs.jctc.6b00978. Epub 2017 Jan 19.

PMID:
28042965
42.

Blind protein structure prediction using accelerated free-energy simulations.

Perez A, Morrone JA, Brini E, MacCallum JL, Dill KA.

Sci Adv. 2016 Nov 11;2(11):e1601274. eCollection 2016 Nov.

43.

Adapting the semi-explicit assembly solvation model for estimating water-cyclohexane partitioning with the SAMPL5 molecules.

Brini E, Paranahewage SS, Fennell CJ, Dill KA.

J Comput Aided Mol Des. 2016 Nov;30(11):1067-1077. doi: 10.1007/s10822-016-9961-9. Epub 2016 Sep 8.

44.

Coronary Artery Disease - Reporting and Data System (CAD-RADS): An Expert Consensus Document of SCCT, ACR and NASCI: Endorsed by the ACC.

Cury RC, Abbara S, Achenbach S, Agatston A, Berman DS, Budoff MJ, Dill KE, Jacobs JE, Maroules CD, Rubin GD, Rybicki FJ, Schoepf UJ, Shaw LJ, Stillman AE, White CS, Woodard PK, Leipsic JA.

JACC Cardiovasc Imaging. 2016 Sep;9(9):1099-1113. doi: 10.1016/j.jcmg.2016.05.005. Review.

45.

Role of Proteome Physical Chemistry in Cell Behavior.

Ghosh K, de Graff AM, Sawle L, Dill KA.

J Phys Chem B. 2016 Sep 15;120(36):9549-63. doi: 10.1021/acs.jpcb.6b04886. Epub 2016 Aug 24. Review.

46.

CAD-RADS(TM) Coronary Artery Disease - Reporting and Data System. An expert consensus document of the Society of Cardiovascular Computed Tomography (SCCT), the American College of Radiology (ACR) and the North American Society for Cardiovascular Imaging (NASCI). Endorsed by the American College of Cardiology.

Cury RC, Abbara S, Achenbach S, Agatston A, Berman DS, Budoff MJ, Dill KE, Jacobs JE, Maroules CD, Rubin GD, Rybicki FJ, Schoepf UJ, Shaw LJ, Stillman AE, White CS, Woodard PK, Leipsic JA.

J Cardiovasc Comput Tomogr. 2016 Jul-Aug;10(4):269-81. doi: 10.1016/j.jcct.2016.04.005. Epub 2016 Jun 15.

47.

CAD-RADS™: Coronary Artery Disease - Reporting and Data System: An Expert Consensus Document of the Society of Cardiovascular Computed Tomography (SCCT), the American College of Radiology (ACR) and the North American Society for Cardiovascular Imaging (NASCI). Endorsed by the American College of Cardiology.

Cury RC, Abbara S, Achenbach S, Agatston A, Berman DS, Budoff MJ, Dill KE, Jacobs JE, Maroules CD, Rubin GD, Rybicki FJ, Schoepf UJ, Shaw LJ, Stillman AE, White CS, Woodard PK, Leipsic JA.

J Am Coll Radiol. 2016 Dec;13(12 Pt A):1458-1466.e9. doi: 10.1016/j.jacr.2016.04.024. Epub 2016 Jun 15.

PMID:
27318576
48.

ACR Appropriateness Criteria Clinically Suspected Pulmonary Arteriovenous Malformation.

Hanley M, Ahmed O, Chandra A, Gage KL, Gerhard-Herman MD, Ginsburg M, Gornik HL, Johnson PT, Oliva IB, Ptak T, Steigner ML, Strax R, Rybicki FJ, Dill KE.

J Am Coll Radiol. 2016 Jul;13(7):796-800. doi: 10.1016/j.jacr.2016.03.020. Epub 2016 May 19. Review.

PMID:
27209598
49.

Molecular Motors: Power Strokes Outperform Brownian Ratchets.

Wagoner JA, Dill KA.

J Phys Chem B. 2016 Jul 7;120(26):6327-36. doi: 10.1021/acs.jpcb.6b02776. Epub 2016 May 17.

PMID:
27136319
50.

Modeling the Overproduction of Ribosomes when Antibacterial Drugs Act on Cells.

Maitra A, Dill KA.

Biophys J. 2016 Feb 2;110(3):743-748. doi: 10.1016/j.bpj.2015.12.016.

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