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Items: 11

1.

Integrative detection and analysis of structural variation in cancer genomes.

Dixon JR, Xu J, Dileep V, Zhan Y, Song F, Le VT, Yardımcı GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, An L, Pool C, Sasaki T, Rivera-Mulia JC, Ozadam H, Lajoie BR, Kaul R, Buckley M, Lee K, Diegel M, Pezic D, Ernst C, Hadjur S, Odom DT, Stamatoyannopoulos JA, Broach JR, Hardison RC, Ay F, Noble WS, Dekker J, Gilbert DM, Yue F.

Nat Genet. 2018 Sep 10. doi: 10.1038/s41588-018-0195-8. [Epub ahead of print]

PMID:
30202056
2.

Single-cell replication profiling to measure stochastic variation in mammalian replication timing.

Dileep V, Gilbert DM.

Nat Commun. 2018 Jan 30;9(1):427. doi: 10.1038/s41467-017-02800-w.

3.

Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program.

Foti R, Gnan S, Cornacchia D, Dileep V, Bulut-Karslioglu A, Diehl S, Buness A, Klein FA, Huber W, Johnstone E, Loos R, Bertone P, Gilbert DM, Manke T, Jenuwein T, Buonomo SC.

Mol Cell. 2016 Jan 21;61(2):260-73. doi: 10.1016/j.molcel.2015.12.001. Epub 2015 Dec 24.

4.

Large-Scale Chromatin Structure-Function Relationships during the Cell Cycle and Development: Insights from Replication Timing.

Dileep V, Rivera-Mulia JC, Sima J, Gilbert DM.

Cold Spring Harb Symp Quant Biol. 2015;80:53-63. doi: 10.1101/sqb.2015.80.027284. Epub 2015 Nov 20. Review.

PMID:
26590169
5.

Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program.

Dileep V, Ay F, Sima J, Vera DL, Noble WS, Gilbert DM.

Genome Res. 2015 Aug;25(8):1104-13. doi: 10.1101/gr.183699.114. Epub 2015 May 20.

6.

Topologically associating domains are stable units of replication-timing regulation.

Pope BD, Ryba T, Dileep V, Yue F, Wu W, Denas O, Vera DL, Wang Y, Hansen RS, Canfield TK, Thurman RE, Cheng Y, Gülsoy G, Dennis JH, Snyder MP, Stamatoyannopoulos JA, Taylor J, Hardison RC, Kahveci T, Ren B, Gilbert DM.

Nature. 2014 Nov 20;515(7527):402-5. doi: 10.1038/nature13986.

7.

Murine esBAF chromatin remodeling complex subunits BAF250a and Brg1 are necessary to maintain and reprogram pluripotency-specific replication timing of select replication domains.

Takebayashi S, Lei I, Ryba T, Sasaki T, Dileep V, Battaglia D, Gao X, Fang P, Fan Y, Esteban MA, Tang J, Crabtree GR, Wang Z, Gilbert DM.

Epigenetics Chromatin. 2013 Dec 13;6(1):42. doi: 10.1186/1756-8935-6-42.

8.

Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells.

Cornacchia D, Dileep V, Quivy JP, Foti R, Tili F, Santarella-Mellwig R, Antony C, Almouzni G, Gilbert DM, Buonomo SB.

EMBO J. 2012 Sep 12;31(18):3678-90. doi: 10.1038/emboj.2012.214. Epub 2012 Jul 31.

9.

Chromatin-interaction compartment switch at developmentally regulated chromosomal domains reveals an unusual principle of chromatin folding.

Takebayashi S, Dileep V, Ryba T, Dennis JH, Gilbert DM.

Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12574-9. doi: 10.1073/pnas.1207185109. Epub 2012 Jul 17.

10.

Genome-wide analysis of replication timing in mammalian cells: troubleshooting problems encountered when comparing different cell types.

Dileep V, Didier R, Gilbert DM.

Methods. 2012 Jun;57(2):165-9. doi: 10.1016/j.ymeth.2012.05.009. Epub 2012 Jun 6.

11.

Application of polymerase chain reaction for detection of Vibrio parahaemolyticus associated with tropical seafoods and coastal environment.

Dileep V, Kumar HS, Kumar Y, Nishibuchi M, Karunasagar I, Karunasagar I.

Lett Appl Microbiol. 2003;36(6):423-7.

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