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Items: 23

1.

Efficient long-distance energy transport in molecular systems through adiabatic passage.

Dijkstra AG, Beige A.

J Chem Phys. 2019 Jul 21;151(3):034114. doi: 10.1063/1.5100210.

PMID:
31325938
2.

Modeling and analyzing a photo-driven molecular motor system: Ratchet dynamics and non-linear optical spectra.

Ikeda T, Dijkstra AG, Tanimura Y.

J Chem Phys. 2019 Mar 21;150(11):114103. doi: 10.1063/1.5086948.

PMID:
30902006
3.

Ultrafast dissolution and creation of bonds in IrTe2 induced by photodoping.

Ideta SI, Zhang D, Dijkstra AG, Artyukhin S, Keskin S, Cingolani R, Shimojima T, Ishizaka K, Ishii H, Kudo K, Nohara M, Miller RJD.

Sci Adv. 2018 Jul 27;4(7):eaar3867. doi: 10.1126/sciadv.aar3867. eCollection 2018 Jul. Erratum in: Sci Adv. 2019 Mar 29;5(3):eaax2646.

4.

Spectral Filtering as a Tool for Two-Dimensional Spectroscopy: A Theoretical Model.

Green D, V A Camargo F, Heisler IA, Dijkstra AG, Jones GA.

J Phys Chem A. 2018 Aug 2;122(30):6206-6213. doi: 10.1021/acs.jpca.8b03339. Epub 2018 Jul 23.

5.

Simulation of photo-excited adenine in water with a hierarchy of equations of motion approach.

Dijkstra AG, Prokhorenko VI.

J Chem Phys. 2017 Aug 14;147(6):064102. doi: 10.1063/1.4997433.

6.

New Insights into the Photophysics of DNA Nucleobases.

Prokhorenko VI, Picchiotti A, Pola M, Dijkstra AG, Miller RJ.

J Phys Chem Lett. 2016 Nov 17;7(22):4445-4450. Epub 2016 Oct 27.

7.

How two-dimensional brick layer J-aggregates differ from linear ones: Excitonic properties and line broadening mechanisms.

Dijkstra AG, Duan HG, Knoester J, Nelson KA, Cao J.

J Chem Phys. 2016 Apr 7;144(13):134310. doi: 10.1063/1.4944980.

8.

Energy transfer in structured and unstructured environments: Master equations beyond the Born-Markov approximations.

Iles-Smith J, Dijkstra AG, Lambert N, Nazir A.

J Chem Phys. 2016 Jan 28;144(4):044110. doi: 10.1063/1.4940218.

9.

Efficient tool to calculate two-dimensional optical spectra for photoactive molecular complexes.

Duan HG, Dijkstra AG, Nalbach P, Thorwart M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Oct;92(4):042708. doi: 10.1103/PhysRevE.92.042708. Epub 2015 Oct 13.

PMID:
26565273
10.

Coherent Exciton Dynamics in the Presence of Underdamped Vibrations.

Dijkstra AG, Wang C, Cao J, Fleming GR.

J Phys Chem Lett. 2015 Feb 19;6(4):627-32. doi: 10.1021/jz502701u. Epub 2015 Feb 2.

PMID:
26262477
11.

Linear and third- and fifth-order nonlinear spectroscopies of a charge transfer system coupled to an underdamped vibration.

Dijkstra AG, Tanimura Y.

J Chem Phys. 2015 Jun 7;142(21):212423. doi: 10.1063/1.4917025.

PMID:
26049443
12.

Time and Space resolved Methods: general discussion.

Zanni M, E D J, Aravamudhan S, Pallipurath A, Arunan E, Schnedermann C, Mishra AK, Warren M, Hirst JD, John F, Pal R, Helliwell JR, Moirangthem K, Chakraborty S, Dijkstra AG, Roy Chowdhury P, Ghiggino K, Miller RJ, Meech S, Medhi H, Hariharan M, Ariese F, Edwards A, Mallia AR, Umapathy S, Meedom Nielsen M, Hunt N, Tian ZY, Skelton J, Sankar G, Goswami D.

Faraday Discuss. 2015;177:263-92. doi: 10.1039/c5fd90017d. No abstract available.

PMID:
25849318
13.

Local and Global Dynamics: general discussion.

Zanni M, Jemmis ED, Aravamudhan S, Arunan E, Hunt N, Mukhopadhyay S, Shepherd HJ, Keshavamurthy S, Dijkstra AG, Ashfold M, Prabal Goswami H, Nenov A, Medhi H, Ghiggino K, Moirangthem K, Miller RJ, Goswami D, Umapathy S, Helliwell JR, Hirst JD, Meech S, Mukamel S, Bagchi B, Buron-Le Cointe M.

Faraday Discuss. 2015;177:381-403. doi: 10.1039/C5FD90018B. No abstract available.

PMID:
25820607
14.

Calculating two-dimensional spectra with the mixed quantum-classical Ehrenfest method.

van der Vegte CP, Dijkstra AG, Knoester J, Jansen TL.

J Phys Chem A. 2013 Jul 25;117(29):5970-80. doi: 10.1021/jp311668r. Epub 2013 Feb 15.

PMID:
23360103
15.

Non-Markovianity: initial correlations and nonlinear optical measurements.

Dijkstra AG, Tanimura Y.

Philos Trans A Math Phys Eng Sci. 2012 Aug 13;370(1972):3658-71. doi: 10.1098/rsta.2011.0203.

16.

Modeling the vibrational dynamics and nonlinear infrared spectra of coupled amide I and II modes in peptides.

Dijkstra AG, Jansen Tl, Knoester J.

J Phys Chem B. 2011 May 12;115(18):5392-401. doi: 10.1021/jp109431a. Epub 2011 Jan 6.

PMID:
21208013
17.

Non-Markovian entanglement dynamics in the presence of system-bath coherence.

Dijkstra AG, Tanimura Y.

Phys Rev Lett. 2010 Jun 25;104(25):250401. Epub 2010 Jun 21.

PMID:
20867350
18.

Two-dimensional spectroscopy of extended molecular systems: applications to energy transport and relaxation in an alpha-helix.

Dijkstra AG, Jansen TL, Knoester J.

J Phys Chem A. 2010 Jul 15;114(27):7315-20. doi: 10.1021/jp9111124.

PMID:
20509640
19.

Simulation of vibrational energy transfer in two-dimensional infrared spectroscopy of amide I and amide II modes in solution.

Bloem R, Dijkstra AG, Jansen Tl, Knoester J.

J Chem Phys. 2008 Aug 7;129(5):055101. doi: 10.1063/1.2961020.

PMID:
18698926
20.

Localization and coherent dynamics of excitons in the two-dimensional optical spectrum of molecular J-aggregates.

Dijkstra AG, la Cour Jansen T, Knoester J.

J Chem Phys. 2008 Apr 28;128(16):164511. doi: 10.1063/1.2897753.

PMID:
18447463
21.

Vibrational relaxation in simulated two-dimensional infrared spectra of two amide modes in solution.

Dijkstra AG, Jansen Tl, Bloem R, Knoester J.

J Chem Phys. 2007 Nov 21;127(19):194505.

PMID:
18035890
22.

Modeling the amide I bands of small peptides.

la Cour Jansen T, Dijkstra AG, Watson TM, Hirst JD, Knoester J.

J Chem Phys. 2006 Jul 28;125(4):44312. Erratum in: J Chem Phys. 2012 May 28;136(20):209901.

PMID:
16942147
23.

Collective oscillations and the linear and two-dimensional infrared spectra of inhomogeneous beta-sheets.

Dijkstra AG, Knoester J.

J Phys Chem B. 2005 May 19;109(19):9787-98.

PMID:
16852179

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