Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 87

1.

Mitochondrial Genome Variation Affects Multiple Respiration and Nonrespiration Phenotypes in Saccharomyces cerevisiae.

Vijayraghavan S, Kozmin SG, Strope PK, Skelly DA, Lin Z, Kennell J, Magwene PM, Dietrich FS, McCusker JH.

Genetics. 2019 Feb;211(2):773-786. doi: 10.1534/genetics.118.301546. Epub 2018 Nov 29.

PMID:
30498022
2.

2μ plasmid in Saccharomyces species and in Saccharomyces cerevisiae.

Strope PK, Kozmin SG, Skelly DA, Magwene PM, Dietrich FS, McCusker JH.

FEMS Yeast Res. 2015 Dec;15(8). pii: fov090. doi: 10.1093/femsyr/fov090. Epub 2015 Oct 12.

3.

The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen.

Strope PK, Skelly DA, Kozmin SG, Mahadevan G, Stone EA, Magwene PM, Dietrich FS, McCusker JH.

Genome Res. 2015 May;25(5):762-74. doi: 10.1101/gr.185538.114. Epub 2015 Apr 3.

4.

Structures of naturally evolved CUP1 tandem arrays in yeast indicate that these arrays are generated by unequal nonhomologous recombination.

Zhao Y, Strope PK, Kozmin SG, McCusker JH, Dietrich FS, Kokoska RJ, Petes TD.

G3 (Bethesda). 2014 Sep 17;4(11):2259-69. doi: 10.1534/g3.114.012922.

5.

Cryptococcus gattii VGIII isolates causing infections in HIV/AIDS patients in Southern California: identification of the local environmental source as arboreal.

Springer DJ, Billmyre RB, Filler EE, Voelz K, Pursall R, Mieczkowski PA, Larsen RA, Dietrich FS, May RC, Filler SG, Heitman J.

PLoS Pathog. 2014 Aug 21;10(8):e1004285. doi: 10.1371/journal.ppat.1004285. eCollection 2014 Aug.

6.

Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.

Janbon G, Ormerod KL, Paulet D, Byrnes EJ 3rd, Yadav V, Chatterjee G, Mullapudi N, Hon CC, Billmyre RB, Brunel F, Bahn YS, Chen W, Chen Y, Chow EW, Coppée JY, Floyd-Averette A, Gaillardin C, Gerik KJ, Goldberg J, Gonzalez-Hilarion S, Gujja S, Hamlin JL, Hsueh YP, Ianiri G, Jones S, Kodira CD, Kozubowski L, Lam W, Marra M, Mesner LD, Mieczkowski PA, Moyrand F, Nielsen K, Proux C, Rossignol T, Schein JE, Sun S, Wollschlaeger C, Wood IA, Zeng Q, Neuvéglise C, Newlon CS, Perfect JR, Lodge JK, Idnurm A, Stajich JE, Kronstad JW, Sanyal K, Heitman J, Fraser JA, Cuomo CA, Dietrich FS.

PLoS Genet. 2014 Apr 17;10(4):e1004261. doi: 10.1371/journal.pgen.1004261. eCollection 2014 Apr.

7.

The reference genome sequence of Saccharomyces cerevisiae: then and now.

Engel SR, Dietrich FS, Fisk DG, Binkley G, Balakrishnan R, Costanzo MC, Dwight SS, Hitz BC, Karra K, Nash RS, Weng S, Wong ED, Lloyd P, Skrzypek MS, Miyasato SR, Simison M, Cherry JM.

G3 (Bethesda). 2014 Mar 20;4(3):389-98. doi: 10.1534/g3.113.008995.

8.

Unisexual and heterosexual meiotic reproduction generate aneuploidy and phenotypic diversity de novo in the yeast Cryptococcus neoformans.

Ni M, Feretzaki M, Li W, Floyd-Averette A, Mieczkowski P, Dietrich FS, Heitman J.

PLoS Biol. 2013 Sep;11(9):e1001653. doi: 10.1371/journal.pbio.1001653. Epub 2013 Sep 10.

9.

Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.

Martin MD, Cappellini E, Samaniego JA, Zepeda ML, Campos PF, Seguin-Orlando A, Wales N, Orlando L, Ho SY, Dietrich FS, Mieczkowski PA, Heitman J, Willerslev E, Krogh A, Ristaino JB, Gilbert MT.

Nat Commun. 2013;4:2172. doi: 10.1038/ncomms3172.

10.

Genomes of Ashbya fungi isolated from insects reveal four mating-type loci, numerous translocations, lack of transposons, and distinct gene duplications.

Dietrich FS, Voegeli S, Kuo S, Philippsen P.

G3 (Bethesda). 2013 Aug 7;3(8):1225-39. doi: 10.1534/g3.112.002881.

11.

High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family.

McDonald TR, Mueller O, Dietrich FS, Lutzoni F.

BMC Genomics. 2013 Apr 4;14:225. doi: 10.1186/1471-2164-14-225.

12.

Discovery of a modified tetrapolar sexual cycle in Cryptococcus amylolentus and the evolution of MAT in the Cryptococcus species complex.

Findley K, Sun S, Fraser JA, Hsueh YP, Averette AF, Li W, Dietrich FS, Heitman J.

PLoS Genet. 2012;8(2):e1002528. doi: 10.1371/journal.pgen.1002528. Epub 2012 Feb 16.

13.

High-resolution genome-wide analysis of irradiated (UV and γ-rays) diploid yeast cells reveals a high frequency of genomic loss of heterozygosity (LOH) events.

St Charles J, Hazkani-Covo E, Yin Y, Andersen SL, Dietrich FS, Greenwell PW, Malc E, Mieczkowski P, Petes TD.

Genetics. 2012 Apr;190(4):1267-84. doi: 10.1534/genetics.111.137927. Epub 2012 Jan 20.

14.

A diverse population of Cryptococcus gattii molecular type VGIII in southern Californian HIV/AIDS patients.

Byrnes EJ 3rd, Li W, Ren P, Lewit Y, Voelz K, Fraser JA, Dietrich FS, May RC, Chaturvedi S, Chaturvedi V, Heitman J.

PLoS Pathog. 2011 Sep;7(9):e1002205. doi: 10.1371/journal.ppat.1002205. Epub 2011 Sep 1. Erratum in: PLoS Pathog. 2011 Nov;7(11). doi:10.1371/annotation/a23709b0-8d67-4b57-aa05-d5d70d830724. Chatuverdi, Sudha [corrected to Chaturvedi, Sudha]; Chatuverdi, Vishnu [corrected to Chaturvedi, Vishnu].

15.

A whole-genome analysis of premature termination codons.

Cirulli ET, Heinzen EL, Dietrich FS, Shianna KV, Singh A, Maia JM, Goedert JJ, Goldstein DB.

Genomics. 2011 Nov;98(5):337-42. doi: 10.1016/j.ygeno.2011.07.001. Epub 2011 Jul 22.

16.

Multiple horizontal gene transfers of ammonium transporters/ammonia permeases from prokaryotes to eukaryotes: toward a new functional and evolutionary classification.

McDonald TR, Dietrich FS, Lutzoni F.

Mol Biol Evol. 2012 Jan;29(1):51-60. doi: 10.1093/molbev/msr123. Epub 2011 Jun 16.

17.

Oxidative stress survival in a clinical Saccharomyces cerevisiae isolate is influenced by a major quantitative trait nucleotide.

Diezmann S, Dietrich FS.

Genetics. 2011 Jul;188(3):709-22. doi: 10.1534/genetics.111.128256. Epub 2011 Apr 21.

18.

Coupled-channel calculation of nonelastic cross sections using a density-functional structure model.

Nobre GP, Dietrich FS, Escher JE, Thompson IJ, Dupuis M, Terasaki J, Engel J.

Phys Rev Lett. 2010 Nov 12;105(20):202502. Epub 2010 Nov 10.

PMID:
21231224
19.

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).

Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, Burns C, Canbäck B, Casselton LA, Cheng CK, Deng J, Dietrich FS, Fargo DC, Farman ML, Gathman AC, Goldberg J, Guigó R, Hoegger PJ, Hooker JB, Huggins A, James TY, Kamada T, Kilaru S, Kodira C, Kües U, Kupfer D, Kwan HS, Lomsadze A, Li W, Lilly WW, Ma LJ, Mackey AJ, Manning G, Martin F, Muraguchi H, Natvig DO, Palmerini H, Ramesh MA, Rehmeyer CJ, Roe BA, Shenoy N, Stanke M, Ter-Hovhannisyan V, Tunlid A, Velagapudi R, Vision TJ, Zeng Q, Zolan ME, Pukkila PJ.

Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11889-94. doi: 10.1073/pnas.1003391107. Epub 2010 Jun 14.

20.

Evolution of the sex-related locus and genomic features shared in microsporidia and fungi.

Lee SC, Corradi N, Doan S, Dietrich FS, Keeling PJ, Heitman J.

PLoS One. 2010 May 7;5(5):e10539. doi: 10.1371/journal.pone.0010539.

21.

Morphological and genomic characterization of Filobasidiella depauperata: a homothallic sibling species of the pathogenic cryptococcus species complex.

Rodriguez-Carres M, Findley K, Sun S, Dietrich FS, Heitman J.

PLoS One. 2010 Mar 10;5(3):e9620. doi: 10.1371/journal.pone.0009620.

22.

Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production.

Argueso JL, Carazzolle MF, Mieczkowski PA, Duarte FM, Netto OV, Missawa SK, Galzerani F, Costa GG, Vidal RO, Noronha MF, Dominska M, Andrietta MG, Andrietta SR, Cunha AF, Gomes LH, Tavares FC, Alcarde AR, Dietrich FS, McCusker JH, Petes TD, Pereira GA.

Genome Res. 2009 Dec;19(12):2258-70. doi: 10.1101/gr.091777.109. Epub 2009 Oct 7.

23.

Saccharomyces cerevisiae: population divergence and resistance to oxidative stress in clinical, domesticated and wild isolates.

Diezmann S, Dietrich FS.

PLoS One. 2009;4(4):e5317. doi: 10.1371/journal.pone.0005317. Epub 2009 Apr 24.

24.

Non-coding RNA prediction and verification in Saccharomyces cerevisiae.

Kavanaugh LA, Dietrich FS.

PLoS Genet. 2009 Jan;5(1):e1000321. doi: 10.1371/journal.pgen.1000321. Epub 2009 Jan 2.

25.

Microsporidia evolved from ancestral sexual fungi.

Lee SC, Corradi N, Byrnes EJ 3rd, Torres-Martinez S, Dietrich FS, Keeling PJ, Heitman J.

Curr Biol. 2008 Nov 11;18(21):1675-9. doi: 10.1016/j.cub.2008.09.030. Epub 2008 Oct 30.

26.

Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans.

Hu G, Liu I, Sham A, Stajich JE, Dietrich FS, Kronstad JW.

Genome Biol. 2008;9(2):R41. doi: 10.1186/gb-2008-9-2-r41. Epub 2008 Feb 22.

28.

Computational and experimental identification of novel human imprinted genes.

Luedi PP, Dietrich FS, Weidman JR, Bosko JM, Jirtle RL, Hartemink AJ.

Genome Res. 2007 Dec;17(12):1723-30. Epub 2007 Nov 30.

29.

Comparative genomic analysis of fungal genomes reveals intron-rich ancestors.

Stajich JE, Dietrich FS, Roy SW.

Genome Biol. 2007;8(10):R223.

30.

Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789.

Wei W, McCusker JH, Hyman RW, Jones T, Ning Y, Cao Z, Gu Z, Bruno D, Miranda M, Nguyen M, Wilhelmy J, Komp C, Tamse R, Wang X, Jia P, Luedi P, Oefner PJ, David L, Dietrich FS, Li Y, Davis RW, Steinmetz LM.

Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12825-30. Epub 2007 Jul 25.

31.

Evolution of budding yeast prion-determinant sequences across diverse fungi.

Harrison LB, Yu Z, Stajich JE, Dietrich FS, Harrison PM.

J Mol Biol. 2007 Apr 20;368(1):273-82. Epub 2007 Feb 3.

PMID:
17320905
32.

Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.

Gattiker A, Rischatsch R, Demougin P, Voegeli S, Dietrich FS, Philippsen P, Primig M.

BMC Genomics. 2007 Jan 9;8:9.

33.

Phylogenomic analysis of non-ribosomal peptide synthetases in the genus Aspergillus.

Cramer RA Jr, Stajich JE, Yamanaka Y, Dietrich FS, Steinbach WJ, Perfect JR.

Gene. 2006 Nov 15;383:24-32. Epub 2006 Jul 21.

PMID:
16962256
34.

Recent evolution of the human pathogen Cryptococcus neoformans by intervarietal transfer of a 14-gene fragment.

Kavanaugh LA, Fraser JA, Dietrich FS.

Mol Biol Evol. 2006 Oct;23(10):1879-90. Epub 2006 Jul 26.

PMID:
16870684
35.

Yeast diversity sampling on the San Juan Islands reveals no evidence for the spread of the Vancouver Island Cryptococcus gattii outbreak to this locale.

Fraser JA, Lim SM, Diezmann S, Wenink EC, Arndt CG, Cox GM, Dietrich FS, Heitman J.

FEMS Yeast Res. 2006 Jun;6(4):620-4.

36.
37.

Morphogenesis in skin is governed by discrete sets of differentially expressed microRNAs.

Yi R, O'Carroll D, Pasolli HA, Zhang Z, Dietrich FS, Tarakhovsky A, Fuchs E.

Nat Genet. 2006 Mar;38(3):356-62. Epub 2006 Feb 5.

PMID:
16462742
38.

Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak.

Fraser JA, Giles SS, Wenink EC, Geunes-Boyer SG, Wright JR, Diezmann S, Allen A, Stajich JE, Dietrich FS, Perfect JR, Heitman J.

Nature. 2005 Oct 27;437(7063):1360-4. Epub 2005 Oct 9.

PMID:
16222245
39.

Clinical and environmental isolates of Cryptococcus gattii from Australia that retain sexual fecundity.

Campbell LT, Fraser JA, Nichols CB, Dietrich FS, Carter D, Heitman J.

Eukaryot Cell. 2005 Aug;4(8):1410-9.

40.
41.

Contribution of horizontal gene transfer to the evolution of Saccharomyces cerevisiae.

Hall C, Brachat S, Dietrich FS.

Eukaryot Cell. 2005 Jun;4(6):1102-15.

42.

Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE.

Zhang Z, Dietrich FS.

Nucleic Acids Res. 2005 May 19;33(9):2838-51. Print 2005.

43.

Convergent evolution of chromosomal sex-determining regions in the animal and fungal kingdoms.

Fraser JA, Diezmann S, Subaran RL, Allen A, Lengeler KB, Dietrich FS, Heitman J.

PLoS Biol. 2004 Dec;2(12):e384. Epub 2004 Nov 9.

44.

Identification of Cryptococcus neoformans temperature-regulated genes with a genomic-DNA microarray.

Kraus PR, Boily MJ, Giles SS, Stajich JE, Allen A, Cox GM, Dietrich FS, Perfect JR, Heitman J.

Eukaryot Cell. 2004 Oct;3(5):1249-60.

45.

Phylogenetic footprint analysis of IGF2 in extant mammals.

Weidman JR, Murphy SK, Nolan CM, Dietrich FS, Jirtle RL.

Genome Res. 2004 Sep;14(9):1726-32.

46.
47.

The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome.

Dietrich FS, Voegeli S, Brachat S, Lerch A, Gates K, Steiner S, Mohr C, Pöhlmann R, Luedi P, Choi S, Wing RA, Flavier A, Gaffney TD, Philippsen P.

Science. 2004 Apr 9;304(5668):304-7. Epub 2004 Mar 4.

48.

Reinvestigation of the Saccharomyces cerevisiae genome annotation by comparison to the genome of a related fungus: Ashbya gossypii.

Brachat S, Dietrich FS, Voegeli S, Zhang Z, Stuart L, Lerch A, Gates K, Gaffney T, Philippsen P.

Genome Biol. 2003;4(7):R45. Epub 2003 Jun 25.

49.
50.

Mating-type locus of Cryptococcus neoformans: a step in the evolution of sex chromosomes.

Lengeler KB, Fox DS, Fraser JA, Allen A, Forrester K, Dietrich FS, Heitman J.

Eukaryot Cell. 2002 Oct;1(5):704-18.

Supplemental Content

Loading ...
Support Center