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Items: 1 to 50 of 152

1.

Loss of genomic integrity induced by lysosphingolipid imbalance drives ageing in the heart.

Ahuja G, Bartsch D, Yao W, Geissen S, Frank S, Aguirre A, Russ N, Messling JE, Dodzian J, Lagerborg KA, Vargas NE, Muck JS, Brodesser S, Baldus S, Sachinidis A, Hescheler J, Dieterich C, Trifunovic A, Papantonis A, Petrascheck M, Klinke A, Jain M, Valenzano DR, Kurian L.

EMBO Rep. 2019 Mar 18. pii: e47407. doi: 10.15252/embr.201847407. [Epub ahead of print]

PMID:
30886000
2.

The RNA-Protein Interactome of Differentiated Kidney Tubular Epithelial Cells.

Ignarski M, Rill C, Kaiser RWJ, Kaldirim M, Neuhaus R, Esmaillie R, Li X, Klein C, Bohl K, Petersen M, Frese CK, Höhne M, Atanassov I, Rinschen MM, Höpker K, Schermer B, Benzing T, Dieterich C, Fabretti F, Müller RU.

J Am Soc Nephrol. 2019 Mar 13. pii: ASN.2018090914. doi: 10.1681/ASN.2018090914. [Epub ahead of print]

PMID:
30867249
3.

Computational approaches for circular RNA analysis.

Jakobi T, Dieterich C.

Wiley Interdiscip Rev RNA. 2019 Feb 20:e1528. doi: 10.1002/wrna.1528. [Epub ahead of print] Review.

PMID:
30788906
4.

Deregulated Splicing Is a Major Mechanism of RNA-Induced Toxicity in Huntington's Disease.

Schilling J, Broemer M, Atanassov I, Duernberger Y, Vorberg I, Dieterich C, Dagane A, Dittmar G, Wanker E, van Roon-Mom W, Winter J, Krauß S.

J Mol Biol. 2019 Jan 31. pii: S0022-2836(19)30051-8. doi: 10.1016/j.jmb.2019.01.034. [Epub ahead of print]

5.

ATF6 Regulates Cardiac Hypertrophy by Transcriptional Induction of the mTORC1 Activator, Rheb.

Blackwood EA, Hofmann C, Santo Domingo M, Bilal AS, Sarakki A, Stauffer W, Arrieta A, Thuerauf DJ, Kolkhorst FW, Müller OJ, Jakobi T, Dieterich C, Katus HA, Doroudgar S, Glembotski CC.

Circ Res. 2019 Jan 4;124(1):79-93. doi: 10.1161/CIRCRESAHA.118.313854.

PMID:
30582446
6.

A placental mammal-specific microRNA cluster acts as a natural brake for sociability in mice.

Lackinger M, Sungur AÖ, Daswani R, Soutschek M, Bicker S, Stemmler L, Wüst T, Fiore R, Dieterich C, Schwarting RK, Wöhr M, Schratt G.

EMBO Rep. 2019 Feb;20(2). pii: e46429. doi: 10.15252/embr.201846429. Epub 2018 Dec 14.

PMID:
30552145
7.

RNA Modification Level Estimation with pulseR.

Boileau E, Dieterich C.

Genes (Basel). 2018 Dec 10;9(12). pii: E619. doi: 10.3390/genes9120619.

8.

Identification of Methylated Transcripts Using the TRIBE Approach.

Worpenberg L, Jakobi T, Dieterich C, Roignant JY.

Methods Mol Biol. 2019;1870:89-106. doi: 10.1007/978-1-4939-8808-2_7.

PMID:
30539549
9.

circtools - a one-stop software solution for circular RNA research.

Jakobi T, Uvarovskii A, Dieterich C.

Bioinformatics. 2018 Nov 21. doi: 10.1093/bioinformatics/bty948. [Epub ahead of print]

PMID:
30462173
10.

Identification and regulation of the long non-coding RNA Heat2 in heart failure.

Boeckel JN, Perret MF, Glaser SF, Seeger T, Heumüller AW, Chen W, John D, Kokot KE, Katus HA, Haas J, Lackner MK, Kayvanpour E, Grabe N, Dieterich C, von Haehling S, Ebner N, Hünecke S, Leuschner F, Fichtlscherer S, Meder B, Zeiher AM, Dimmeler S, Keller T.

J Mol Cell Cardiol. 2019 Jan;126:13-22. doi: 10.1016/j.yjmcc.2018.11.004. Epub 2018 Nov 13.

PMID:
30445017
11.

Exon Junction Complexes Suppress Spurious Splice Sites to Safeguard Transcriptome Integrity.

Boehm V, Britto-Borges T, Steckelberg AL, Singh KK, Gerbracht JV, Gueney E, Blazquez L, Altmüller J, Dieterich C, Gehring NH.

Mol Cell. 2018 Nov 1;72(3):482-495.e7. doi: 10.1016/j.molcel.2018.08.030.

PMID:
30388410
12.

Circular RNAs in the cardiovascular system.

Gomes CPC, Salgado-Somoza A, Creemers EE, Dieterich C, Lustrek M, Devaux Y; Cardiolinc™ network.

Noncoding RNA Res. 2018 Feb 25;3(1):1-11. doi: 10.1016/j.ncrna.2018.02.002. eCollection 2018 Mar. Review.

13.

De-Identification of German Medical Admission Notes.

Richter-Pechanski P, Riezler S, Dieterich C.

Stud Health Technol Inform. 2018;253:165-169.

PMID:
30147065
14.

HiGHmed - An Open Platform Approach to Enhance Care and Research across Institutional Boundaries.

Haarbrandt B, Schreiweis B, Rey S, Sax U, Scheithauer S, Rienhoff O, Knaup-Gregori P, Bavendiek U, Dieterich C, Brors B, Kraus I, Thoms CM, Jäger D, Ellenrieder V, Bergh B, Yahyapour R, Eils R, Consortium H, Marschollek M.

Methods Inf Med. 2018 Jul;57(S 01):e66-e81. doi: 10.3414/ME18-02-0002. Epub 2018 Jul 17.

15.

A Vastly Increased Chemical Variety of RNA Modifications Containing a Thioacetal Structure.

Dal Magro C, Keller P, Kotter A, Werner S, Duarte V, Marchand V, Ignarski M, Freiwald A, Müller RU, Dieterich C, Motorin Y, Butter F, Atta M, Helm M.

Angew Chem Int Ed Engl. 2018 Jun 25;57(26):7893-7897. doi: 10.1002/anie.201713188. Epub 2018 Apr 27.

PMID:
29624844
16.

Insights into the ubiquitin-proteasome system of human embryonic stem cells.

Saez I, Koyuncu S, Gutierrez-Garcia R, Dieterich C, Vilchez D.

Sci Rep. 2018 Mar 6;8(1):4092. doi: 10.1038/s41598-018-22384-9.

17.

Deep Computational Circular RNA Analytics from RNA-seq Data.

Jakobi T, Dieterich C.

Methods Mol Biol. 2018;1724:9-25. doi: 10.1007/978-1-4939-7562-4_2.

PMID:
29322437
18.

A post-transcriptional program coordinated by CSDE1 prevents intrinsic neural differentiation of human embryonic stem cells.

Ju Lee H, Bartsch D, Xiao C, Guerrero S, Ahuja G, Schindler C, Moresco JJ, Yates JR 3rd, Gebauer F, Bazzi H, Dieterich C, Kurian L, Vilchez D.

Nat Commun. 2017 Nov 13;8(1):1456. doi: 10.1038/s41467-017-01744-5.

19.

Clinical genetics and outcome of left ventricular non-compaction cardiomyopathy.

Sedaghat-Hamedani F, Haas J, Zhu F, Geier C, Kayvanpour E, Liss M, Lai A, Frese K, Pribe-Wolferts R, Amr A, Li DT, Samani OS, Carstensen A, Bordalo DM, Müller M, Fischer C, Shao J, Wang J, Nie M, Yuan L, Haßfeld S, Schwartz C, Zhou M, Zhou Z, Shu Y, Wang M, Huang K, Zeng Q, Cheng L, Fehlmann T, Ehlermann P, Keller A, Dieterich C, Streckfuß-Bömeke K, Liao Y, Gotthardt M, Katus HA, Meder B.

Eur Heart J. 2017 Dec 7;38(46):3449-3460. doi: 10.1093/eurheartj/ehx545.

PMID:
29029073
20.

pulseR: Versatile computational analysis of RNA turnover from metabolic labeling experiments.

Uvarovskii A, Dieterich C.

Bioinformatics. 2017 Oct 15;33(20):3305-3307. doi: 10.1093/bioinformatics/btx368.

PMID:
29028260
21.

Cellular heterogeneity contributes to subtype-specific expression of ZEB1 in human glioblastoma.

Euskirchen P, Radke J, Schmidt MS, Schulze Heuling E, Kadikowski E, Maricos M, Knab F, Grittner U, Zerbe N, Czabanka M, Dieterich C, Miletic H, Mørk S, Koch A, Endres M, Harms C.

PLoS One. 2017 Sep 25;12(9):e0185376. doi: 10.1371/journal.pone.0185376. eCollection 2017.

22.

A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance.

Tain LS, Sehlke R, Jain C, Chokkalingam M, Nagaraj N, Essers P, Rassner M, Grönke S, Froelich J, Dieterich C, Mann M, Alic N, Beyer A, Partridge L.

Mol Syst Biol. 2017 Sep 15;13(9):939. doi: 10.15252/msb.20177663.

23.

Dual RNA-seq reveals no plastic transcriptional response of the coccidian parasite Eimeria falciformis to host immune defenses.

Ehret T, Spork S, Dieterich C, Lucius R, Heitlinger E.

BMC Genomics. 2017 Sep 5;18(1):686. doi: 10.1186/s12864-017-4095-6.

24.

The cardiac microenvironment uses non-canonical WNT signaling to activate monocytes after myocardial infarction.

Meyer IS, Jungmann A, Dieterich C, Zhang M, Lasitschka F, Werkmeister S, Haas J, Müller OJ, Boutros M, Nahrendorf M, Katus HA, Hardt SE, Leuschner F.

EMBO Mol Med. 2017 Sep;9(9):1279-1293. doi: 10.15252/emmm.201707565.

25.

Identification of circular RNAs with host gene-independent expression in human model systems for cardiac differentiation and disease.

Siede D, Rapti K, Gorska AA, Katus HA, Altmüller J, Boeckel JN, Meder B, Maack C, Völkers M, Müller OJ, Backs J, Dieterich C.

J Mol Cell Cardiol. 2017 Aug;109:48-56. doi: 10.1016/j.yjmcc.2017.06.015. Epub 2017 Jul 1.

PMID:
28676412
26.

Flexbar 3.0 - SIMD and multicore parallelization.

Roehr JT, Dieterich C, Reinert K.

Bioinformatics. 2017 Sep 15;33(18):2941-2942. doi: 10.1093/bioinformatics/btx330.

PMID:
28541403
27.

A microRNA-129-5p/Rbfox crosstalk coordinates homeostatic downscaling of excitatory synapses.

Rajman M, Metge F, Fiore R, Khudayberdiev S, Aksoy-Aksel A, Bicker S, Ruedell Reschke C, Raoof R, Brennan GP, Delanty N, Farrell MA, O'Brien DF, Bauer S, Norwood B, Veno MT, Krüger M, Braun T, Kjems J, Rosenow F, Henshall DC, Dieterich C, Schratt G.

EMBO J. 2017 Jun 14;36(12):1770-1787. doi: 10.15252/embj.201695748. Epub 2017 May 9.

28.

FUCHS-towards full circular RNA characterization using RNAseq.

Metge F, Czaja-Hasse LF, Reinhardt R, Dieterich C.

PeerJ. 2017 Feb 28;5:e2934. doi: 10.7717/peerj.2934. eCollection 2017.

29.

Spatio-temporal dynamics of a fish predator: Density-dependent and hydrographic effects on Baltic Sea cod population.

Bartolino V, Tian H, Bergström U, Jounela P, Aro E, Dieterich C, Meier HE, Cardinale M, Bland B, Casini M.

PLoS One. 2017 Feb 16;12(2):e0172004. doi: 10.1371/journal.pone.0172004. eCollection 2017.

30.

Prognostic Relevance of Tumor Purity and Interaction with MGMT Methylation in Glioblastoma.

Schulze Heuling E, Knab F, Radke J, Eskilsson E, Martinez-Ledesma E, Koch A, Czabanka M, Dieterich C, Verhaak RG, Harms C, Euskirchen P.

Mol Cancer Res. 2017 May;15(5):532-540. doi: 10.1158/1541-7786.MCR-16-0322. Epub 2017 Feb 1.

31.

Bayesian prediction of RNA translation from ribosome profiling.

Malone B, Atanassov I, Aeschimann F, Li X, Großhans H, Dieterich C.

Nucleic Acids Res. 2017 Apr 7;45(6):2960-2972. doi: 10.1093/nar/gkw1350.

32.

JACUSA: site-specific identification of RNA editing events from replicate sequencing data.

Piechotta M, Wyler E, Ohler U, Landthaler M, Dieterich C.

BMC Bioinformatics. 2017 Jan 3;18(1):7. doi: 10.1186/s12859-016-1432-8.

33.

Somatic increase of CCT8 mimics proteostasis of human pluripotent stem cells and extends C. elegans lifespan.

Noormohammadi A, Khodakarami A, Gutierrez-Garcia R, Lee HJ, Koyuncu S, König T, Schindler C, Saez I, Fatima A, Dieterich C, Vilchez D.

Nat Commun. 2016 Nov 28;7:13649. doi: 10.1038/ncomms13649.

34.

Reducing RBM20 activity improves diastolic dysfunction and cardiac atrophy.

Hinze F, Dieterich C, Radke MH, Granzier H, Gotthardt M.

J Mol Med (Berl). 2016 Dec;94(12):1349-1358. Epub 2016 Nov 26.

35.

Analysis of cerebral glucose metabolism in patients with post-operative cognitive dysfunction.

Herter JM, Brenscheid N, Nienhaus L, Dieterich C, Weckesser M, VAN Aken H.

Minerva Anestesiol. 2017 Mar;83(3):337 - 338. doi: 10.23736/S0375-9393.16.11717-1. Epub 2016 Nov 3. No abstract available.

36.

SPIRE, a modular pipeline for eQTL analysis of RNA-Seq data, reveals a regulatory hotspot controlling miRNA expression in C. elegans.

Kel I, Chang Z, Galluccio N, Romeo M, Beretta S, Diomede L, Mezzelani A, Milanesi L, Dieterich C, Merelli I.

Mol Biosyst. 2016 Oct 18;12(11):3447-3458.

PMID:
27722582
37.

Mechanical regulation of transcription controls Polycomb-mediated gene silencing during lineage commitment.

Le HQ, Ghatak S, Yeung CY, Tellkamp F, Günschmann C, Dieterich C, Yeroslaviz A, Habermann B, Pombo A, Niessen CM, Wickström SA.

Nat Cell Biol. 2016 Aug;18(8):864-75. doi: 10.1038/ncb3387. Epub 2016 Jul 11.

PMID:
27398909
38.

A Single Transcriptome of a Green Toad (Bufo viridis) Yields Candidate Genes for Sex Determination and -Differentiation and Non-Anonymous Population Genetic Markers.

Gerchen JF, Reichert SJ, Röhr JT, Dieterich C, Kloas W, Stöck M.

PLoS One. 2016 May 27;11(5):e0156419. doi: 10.1371/journal.pone.0156419. eCollection 2016.

39.

Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts.

Jakobi T, Czaja-Hasse LF, Reinhardt R, Dieterich C.

Genomics Proteomics Bioinformatics. 2016 Aug;14(4):216-23. doi: 10.1016/j.gpb.2016.02.003. Epub 2016 Apr 27.

40.

Mondo complexes regulate TFEB via TOR inhibition to promote longevity in response to gonadal signals.

Nakamura S, Karalay Ö, Jäger PS, Horikawa M, Klein C, Nakamura K, Latza C, Templer SE, Dieterich C, Antebi A.

Nat Commun. 2016 Mar 22;7:10944. doi: 10.1038/ncomms10944.

41.

Specific identification and quantification of circular RNAs from sequencing data.

Cheng J, Metge F, Dieterich C.

Bioinformatics. 2016 Apr 1;32(7):1094-6. doi: 10.1093/bioinformatics/btv656. Epub 2015 Nov 9.

PMID:
26556385
42.

Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus.

Baskaran P, Rödelsperger C, Prabh N, Serobyan V, Markov GV, Hirsekorn A, Dieterich C.

BMC Evol Biol. 2015 Sep 15;15:185. doi: 10.1186/s12862-015-0466-2.

43.

Integrin-linked kinase regulates the niche of quiescent epidermal stem cells.

Morgner J, Ghatak S, Jakobi T, Dieterich C, Aumailley M, Wickström SA.

Nat Commun. 2015 Sep 8;6:8198. doi: 10.1038/ncomms9198.

44.

Cross-tissue and cross-species analysis of gene expression in skeletal muscle and electric organ of African weakly-electric fish (Teleostei; Mormyridae).

Lamanna F, Kirschbaum F, Waurick I, Dieterich C, Tiedemann R.

BMC Genomics. 2015 Sep 3;16:668. doi: 10.1186/s12864-015-1858-9.

45.

Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling.

Aeschimann F, Xiong J, Arnold A, Dieterich C, Großhans H.

Methods. 2015 Sep 1;85:75-89. doi: 10.1016/j.ymeth.2015.06.013. Epub 2015 Jun 20.

PMID:
26102273
46.

Label-Free Protein-RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression.

Boucas J, Fritz C, Schmitt A, Riabinska A, Thelen L, Peifer M, Leeser U, Nuernberg P, Altmueller J, Gaestel M, Dieterich C, Reinhardt HC.

PLoS One. 2015 May 20;10(5):e0125745. doi: 10.1371/journal.pone.0125745. eCollection 2015.

47.

CWC22-dependent pre-mRNA splicing and eIF4A3 binding enables global deposition of exon junction complexes.

Steckelberg AL, Altmueller J, Dieterich C, Gehring NH.

Nucleic Acids Res. 2015 May 19;43(9):4687-700. doi: 10.1093/nar/gkv320. Epub 2015 Apr 13.

48.

A coding-independent function of an alternative Ube3a transcript during neuronal development.

Valluy J, Bicker S, Aksoy-Aksel A, Lackinger M, Sumer S, Fiore R, Wüst T, Seffer D, Metge F, Dieterich C, Wöhr M, Schwarting R, Schratt G.

Nat Neurosci. 2015 May;18(5):666-73. doi: 10.1038/nn.3996. Epub 2015 Apr 13.

PMID:
25867122
49.

A protocol for chemical mutagenesis in Strongyloides ratti.

Guo L, Chang Z, Dieterich C, Streit A.

Exp Parasitol. 2015 Nov;158:2-7. doi: 10.1016/j.exppara.2015.03.001. Epub 2015 Mar 9.

PMID:
25765558
50.

A Grhl2-dependent gene network controls trophoblast branching morphogenesis.

Walentin K, Hinze C, Werth M, Haase N, Varma S, Morell R, Aue A, Pötschke E, Warburton D, Qiu A, Barasch J, Purfürst B, Dieterich C, Popova E, Bader M, Dechend R, Staff AC, Yurtdas ZY, Kilic E, Schmidt-Ott KM.

Development. 2015 Mar 15;142(6):1125-36. doi: 10.1242/dev.113829.

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