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Items: 46

1.

A deceiving case of paraplegia.

Marinucci C, Zardo F, Diella F, Cocito D, Ciancio A, Porta M, Zanone MM.

Intern Emerg Med. 2019 Feb 28. doi: 10.1007/s11739-019-02059-7. [Epub ahead of print] No abstract available.

PMID:
30815781
2.

Ischaemic stroke in patients with liver cirrhosis.

Ponzetto A, Diella FA, Figura N.

Eur J Gastroenterol Hepatol. 2018 Jun;30(6):689. doi: 10.1097/MEG.0000000000001093. No abstract available.

PMID:
29697527
3.

Aetiology of hepatocellular carcinoma in South America.

Ponzetto A, Diella FA, Holton J.

Liver Int. 2018 May;38(5):956-957. doi: 10.1111/liv.13703. Epub 2018 Feb 17. No abstract available.

PMID:
29368452
4.

The eukaryotic linear motif resource - 2018 update.

Gouw M, Michael S, Sámano-Sánchez H, Kumar M, Zeke A, Lang B, Bely B, Chemes LB, Davey NE, Deng Z, Diella F, Gürth CM, Huber AK, Kleinsorg S, Schlegel LS, Palopoli N, Roey KV, Altenberg B, Reményi A, Dinkel H, Gibson TJ.

Nucleic Acids Res. 2018 Jan 4;46(D1):D428-D434. doi: 10.1093/nar/gkx1077.

5.

Exploring Short Linear Motifs Using the ELM Database and Tools.

Gouw M, Sámano-Sánchez H, Van Roey K, Diella F, Gibson TJ, Dinkel H.

Curr Protoc Bioinformatics. 2017 Jun 27;58:8.22.1-8.22.35. doi: 10.1002/cpbi.26.

PMID:
28654726
6.

ELM 2016--data update and new functionality of the eukaryotic linear motif resource.

Dinkel H, Van Roey K, Michael S, Kumar M, Uyar B, Altenberg B, Milchevskaya V, Schneider M, Kühn H, Behrendt A, Dahl SL, Damerell V, Diebel S, Kalman S, Klein S, Knudsen AC, Mäder C, Merrill S, Staudt A, Thiel V, Welti L, Davey NE, Diella F, Gibson TJ.

Nucleic Acids Res. 2016 Jan 4;44(D1):D294-300. doi: 10.1093/nar/gkv1291. Epub 2015 Nov 28.

7.

Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad.

Gibson TJ, Dinkel H, Van Roey K, Diella F.

Cell Commun Signal. 2015 Nov 18;13:42. doi: 10.1186/s12964-015-0121-y. Review.

8.

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.

Torii M, Li G, Li Z, Oughtred R, Diella F, Celen I, Arighi CN, Huang H, Vijay-Shanker K, Wu CH.

Database (Oxford). 2014 Aug 13;2014. pii: bau081. doi: 10.1093/database/bau081. Print 2014.

9.

KinomeXplorer: an integrated platform for kinome biology studies.

Horn H, Schoof EM, Kim J, Robin X, Miller ML, Diella F, Palma A, Cesareni G, Jensen LJ, Linding R.

Nat Methods. 2014 Jun;11(6):603-4. doi: 10.1038/nmeth.2968. No abstract available.

PMID:
24874572
10.

The eukaryotic linear motif resource ELM: 10 years and counting.

Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, Speck T, Krüger D, Grebnev G, Kuban M, Strumillo M, Uyar B, Budd A, Altenberg B, Seiler M, Chemes LB, Glavina J, Sánchez IE, Diella F, Gibson TJ.

Nucleic Acids Res. 2014 Jan;42(Database issue):D259-66. doi: 10.1093/nar/gkt1047. Epub 2013 Nov 7.

11.

Exploring the diversity of SPRY/B30.2-mediated interactions.

Perfetto L, Gherardini PF, Davey NE, Diella F, Helmer-Citterich M, Cesareni G.

Trends Biochem Sci. 2013 Jan;38(1):38-46. doi: 10.1016/j.tibs.2012.10.001. Epub 2012 Nov 17. Review.

PMID:
23164942
12.

Deciphering a global network of functionally associated post-translational modifications.

Minguez P, Parca L, Diella F, Mende DR, Kumar R, Helmer-Citterich M, Gavin AC, van Noort V, Bork P.

Mol Syst Biol. 2012 Jul 17;8:599. doi: 10.1038/msb.2012.31.

13.

ELM--the database of eukaryotic linear motifs.

Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ.

Nucleic Acids Res. 2012 Jan;40(Database issue):D242-51. doi: 10.1093/nar/gkr1064. Epub 2011 Nov 21.

14.

Attributes of short linear motifs.

Davey NE, Van Roey K, Weatheritt RJ, Toedt G, Uyar B, Altenberg B, Budd A, Diella F, Dinkel H, Gibson TJ.

Mol Biosyst. 2012 Jan;8(1):268-81. doi: 10.1039/c1mb05231d. Epub 2011 Sep 12.

PMID:
21909575
15.

From sequence to structural analysis in protein phosphorylation motifs.

Via A, Diella F, Gibson TJ, Helmer-Citterich M.

Front Biosci (Landmark Ed). 2011 Jan 1;16:1261-75. Review.

16.

Phospho.ELM: a database of phosphorylation sites--update 2011.

Dinkel H, Chica C, Via A, Gould CM, Jensen LJ, Gibson TJ, Diella F.

Nucleic Acids Res. 2011 Jan;39(Database issue):D261-7. doi: 10.1093/nar/gkq1104. Epub 2010 Nov 9.

17.

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites.

Zanzoni A, Carbajo D, Diella F, Gherardini PF, Tramontano A, Helmer-Citterich M, Via A.

Nucleic Acids Res. 2011 Jan;39(Database issue):D268-71. doi: 10.1093/nar/gkq936. Epub 2010 Oct 21.

18.

ELM: the status of the 2010 eukaryotic linear motif resource.

Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, Hughes T, Pas J, Rychlewski L, Travé G, Aasland R, Helmer-Citterich M, Linding R, Gibson TJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D167-80. doi: 10.1093/nar/gkp1016. Epub 2009 Nov 17.

19.

Progressive postnatal motoneuron loss in mice lacking GDF-15.

Strelau J, Strzelczyk A, Rusu P, Bendner G, Wiese S, Diella F, Altick AL, von Bartheld CS, Klein R, Sendtner M, Unsicker K.

J Neurosci. 2009 Oct 28;29(43):13640-8. doi: 10.1523/JNEUROSCI.1133-09.2009.

20.

Evidence for the concerted evolution between short linear protein motifs and their flanking regions.

Chica C, Diella F, Gibson TJ.

PLoS One. 2009 Jul 8;4(7):e6052. doi: 10.1371/journal.pone.0006052.

21.

KEPE--a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors.

Diella F, Chabanis S, Luck K, Chica C, Ramu C, Nerlov C, Gibson TJ.

Bioinformatics. 2009 Jan 1;25(1):1-5. doi: 10.1093/bioinformatics/btn594. Epub 2008 Nov 24.

22.

Linear motif atlas for phosphorylation-dependent signaling.

Miller ML, Jensen LJ, Diella F, Jørgensen C, Tinti M, Li L, Hsiung M, Parker SA, Bordeaux J, Sicheritz-Ponten T, Olhovsky M, Pasculescu A, Alexander J, Knapp S, Blom N, Bork P, Li S, Cesareni G, Pawson T, Turk BE, Yaffe MB, Brunak S, Linding R.

Sci Signal. 2008 Sep 2;1(35):ra2. doi: 10.1126/scisignal.1159433.

23.

Understanding eukaryotic linear motifs and their role in cell signaling and regulation.

Diella F, Haslam N, Chica C, Budd A, Michael S, Brown NP, Trave G, Gibson TJ.

Front Biosci. 2008 May 1;13:6580-603. Review.

PMID:
18508681
24.

Phospho.ELM: a database of phosphorylation sites--update 2008.

Diella F, Gould CM, Chica C, Via A, Gibson TJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D240-4. Epub 2007 Oct 25.

25.

Systematic discovery of in vivo phosphorylation networks.

Linding R, Jensen LJ, Ostheimer GJ, van Vugt MA, Jørgensen C, Miron IM, Diella F, Colwill K, Taylor L, Elder K, Metalnikov P, Nguyen V, Pasculescu A, Jin J, Park JG, Samson LD, Woodgett JR, Russell RB, Bork P, Yaffe MB, Pawson T.

Cell. 2007 Jun 29;129(7):1415-26. Epub 2007 Jun 14.

26.

A comparative study of the relationship between protein structure and beta-aggregation in globular and intrinsically disordered proteins.

Linding R, Schymkowitz J, Rousseau F, Diella F, Serrano L.

J Mol Biol. 2004 Sep 3;342(1):345-53.

PMID:
15313629
27.

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins.

Diella F, Cameron S, Gemünd C, Linding R, Via A, Kuster B, Sicheritz-Pontén T, Blom N, Gibson TJ.

BMC Bioinformatics. 2004 Jun 22;5:79.

28.

Protein disorder prediction: implications for structural proteomics.

Linding R, Jensen LJ, Diella F, Bork P, Gibson TJ, Russell RB.

Structure. 2003 Nov;11(11):1453-9.

29.

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.

Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferrè F, Maselli V, Via A, Cesareni G, Diella F, Superti-Furga G, Wyrwicz L, Ramu C, McGuigan C, Gudavalli R, Letunic I, Bork P, Rychlewski L, Küster B, Helmer-Citterich M, Hunter WN, Aasland R, Gibson TJ.

Nucleic Acids Res. 2003 Jul 1;31(13):3625-30.

30.

Kinase-dependent and kinase-independent functions of EphA4 receptors in major axon tract formation in vivo.

Kullander K, Mather NK, Diella F, Dottori M, Boyd AW, Klein R.

Neuron. 2001 Jan;29(1):73-84.

31.

The cytoplasmic domain of the ligand ephrinB2 is required for vascular morphogenesis but not cranial neural crest migration.

Adams RH, Diella F, Hennig S, Helmbacher F, Deutsch U, Klein R.

Cell. 2001 Jan 12;104(1):57-69.

32.

Characterization of the Drosophila ortholog of mouse eIF-3p48/INT-6.

Miyazaki S, Rasmussen S, Imatani A, Diella F, Sullivan DT, Callahan R.

Gene. 1999 Jun 11;233(1-2):241-7.

PMID:
10375641
33.
34.

Characterization of the INT6 mammary tumor gene product.

Diella F, Levi G, Callahan R.

DNA Cell Biol. 1997 Jul;16(7):839-47.

PMID:
9260927
35.
36.

p53 functional impairment and high p21waf1/cip1 expression in human T-cell lymphotropic/leukemia virus type I-transformed T cells.

Cereseto A, Diella F, Mulloy JC, Cara A, Michieli P, Grassmann R, Franchini G, Klotman ME.

Blood. 1996 Sep 1;88(5):1551-60.

37.

Constitutive expression of a truncated INT3 gene in mouse mammary epithelium impairs differentiation and functional development.

Smith GH, Gallahan D, Diella F, Jhappan C, Merlino G, Callahan R.

Cell Growth Differ. 1995 May;6(5):563-77.

38.

Evidence for a second tumor suppressor gene on 17p linked to high S-phase index in primary human breast carcinomas.

Merlo GR, Venesio T, Bernardi A, Cropp CS, Diella F, Cappa AP, Callahan R, Liscia DS.

Cancer Genet Cytogenet. 1994 Sep;76(2):106-11.

PMID:
7923057
39.

Expression of wild-type p53 during the cell cycle in normal human mammary epithelial cells.

Gudas JM, Oka M, Diella F, Trepel J, Cowan KH.

Cell Growth Differ. 1994 Mar;5(3):295-304.

40.

Frequent mutations in breast cancer.

Callahan R, Gallahan D, Smith G, Cropp C, Merlo G, Diella F, Liscia D, Lidereau R.

Ann N Y Acad Sci. 1993 Nov 30;698:21-30. Review. No abstract available.

PMID:
8279759
41.

A locus on chromosome 17p13.3, associated with a high S-phase index is distinct from the p53 gene in breast cancer.

Liscia DS, Venesio T, Diella F, Bernardi A, Cappa AP, Callahan R, Merlo GR.

Ann N Y Acad Sci. 1993 Nov 30;698:120-5. No abstract available.

PMID:
8279748
42.

p53 mutations and histologic type of invasive breast carcinoma. A polymerase chain reaction-single-strand conformation polymorphism and immunohistochemical analysis.

Marchetti A, Buttitta F, Pellegrini S, Diella F, Campani D, Cecchetti D, Squartini F, Callahan R, Bistocchi M.

Ann N Y Acad Sci. 1993 Nov 30;698:114-9. No abstract available.

PMID:
7904136
43.

p53 mutations and histological type of invasive breast carcinoma.

Marchetti A, Buttitta F, Pellegrini S, Campani D, Diella F, Cecchetti D, Callahan R, Bistocchi M.

Cancer Res. 1993 Oct 1;53(19):4665-9.

PMID:
8402644
44.

Genetic and molecular heterogeneity of breast cancer cells.

Callahan R, Cropp C, Merlo GR, Diella F, Venesio T, Lidereau R, Cappa AP, Lisicia DS.

Clin Chim Acta. 1993 Jul 30;217(1):63-73. Review.

PMID:
8222284
45.

In primary human breast carcinomas mutations in exons 5 and 6 of the p53 gene are associated with a high S-phase index.

Merlo GR, Bernardi A, Diella F, Venesio T, Cappa AP, Callahan R, Liscia DS.

Int J Cancer. 1993 Jun 19;54(4):531-5.

PMID:
8514444
46.

p53 alterations in non-small cell lung cancers correlate with metastatic involvement of hilar and mediastinal lymph nodes.

Marchetti A, Buttitta F, Merlo G, Diella F, Pellegrini S, Pepe S, Macchiarini P, Chella A, Angeletti CA, Callahan R, et al.

Cancer Res. 1993 Jun 15;53(12):2846-51.

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