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Items: 11

1.

High-throughput phenotyping of cell-to-cell interactions in gel microdroplet pico-cultures.

Ohan J, Pelle B, Nath P, Huang JH, Hovde B, Vuyisich M, Dichosa AE, Starkenburg SR.

Biotechniques. 2019 May;66(5):218-224. doi: 10.2144/btn-2018-0124.

2.

Complete Genome Sequences of Historic Clostridioides difficile Food-Dwelling Ribotype 078 Strains in Canada Identical to That of the Historic Human Clinical Strain M120 in the United Kingdom.

Kumar A, Davenport KW, Vuyisich G, Kunde YA, Johnson SL, Chain PSG, Dichosa AEK, Rodriguez-Palacios A.

Microbiol Resour Announc. 2018 Sep 27;7(12). pii: e00853-18. doi: 10.1128/MRA.00853-18. eCollection 2018 Sep.

3.

Salivary microbiomes of indigenous Tsimane mothers and infants are distinct despite frequent premastication.

Han CS, Martin MA, Dichosa AEK, Daughton AR, Frietze S, Kaplan H, Gurven MD, Alcock J.

PeerJ. 2016 Nov 3;4:e2660. doi: 10.7717/peerj.2660. eCollection 2016.

4.

Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets.

Dichosa AE, Davenport KW, Li PE, Ahmed SA, Daligault H, Gleasner CD, Kunde Y, McMurry K, Lo CC, Reitenga KG, Daughton AR, Shen X, Frietze S, Wang D, Johnson SL, Drautz-Moses DI, Schuster S, Chain PS, Han C.

Genome Announc. 2015 Mar 19;3(2). pii: e00132-15. doi: 10.1128/genomeA.00132-15.

5.

Draft Genome Sequence of Enterobacter cloacae Strain S611.

Wang D, Han CS, Dichosa AE, Gleasner CD, Johnson SL, Daligault HE, Davenport KW, Li PE, Pierson EA, Pierson LS 3rd.

Genome Announc. 2014 Dec 11;2(6). pii: e00710-14. doi: 10.1128/genomeA.00710-14.

6.

Adaptation genomics of a small-colony variant in a Pseudomonas chlororaphis 30-84 biofilm.

Wang D, Dorosky RJ, Han CS, Lo CC, Dichosa AE, Chain PS, Yu JM, Pierson LS 3rd, Pierson EA.

Appl Environ Microbiol. 2015 Feb;81(3):890-9. doi: 10.1128/AEM.02617-14. Epub 2014 Nov 21.

7.

Capturing and cultivating single bacterial cells in gel microdroplets to obtain near-complete genomes.

Dichosa AE, Daughton AR, Reitenga KG, Fitzsimons MS, Han CS.

Nat Protoc. 2014 Mar;9(3):608-21. doi: 10.1038/nprot.2014.034. Epub 2014 Feb 13.

PMID:
24525754
8.

Draft Genome Sequence of Pseudomonas putida Strain S610, a Seed-Borne Bacterium of Wheat.

Wang D, Han CS, Dichosa AE, Gleasner CD, Johnson SL, Daligault HE, Davenport KW, Li PE, Pierson EA, Pierson LS 3rd.

Genome Announc. 2013 Dec 26;1(6). pii: e01048-13. doi: 10.1128/genomeA.01048-13.

9.

Using phage display selected antibodies to dissect microbiomes for complete de novo genome sequencing of low abundance microbes.

Close DW, Ferrara F, Dichosa AE, Kumar S, Daughton AR, Daligault HE, Reitenga KG, Velappan N, Sanchez TC, Iyer S, Kiss C, Han CS, Bradbury AR.

BMC Microbiol. 2013 Nov 27;13:270. doi: 10.1186/1471-2180-13-270.

10.

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome.

Fitzsimons MS, Novotny M, Lo CC, Dichosa AE, Yee-Greenbaum JL, Snook JP, Gu W, Chertkov O, Davenport KW, McMurry K, Reitenga KG, Daughton AR, He J, Johnson SL, Gleasner CD, Wills PL, Parson-Quintana B, Chain PS, Detter JC, Lasken RS, Han CS.

Genome Res. 2013 May;23(5):878-88. doi: 10.1101/gr.142208.112. Epub 2013 Mar 14.

11.

Artificial polyploidy improves bacterial single cell genome recovery.

Dichosa AE, Fitzsimons MS, Lo CC, Weston LL, Preteska LG, Snook JP, Zhang X, Gu W, McMurry K, Green LD, Chain PS, Detter JC, Han CS.

PLoS One. 2012;7(5):e37387. doi: 10.1371/journal.pone.0037387. Epub 2012 May 22.

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