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Items: 15

1.

Missing value estimation methods for DNA methylation data.

Di Lena P, Sala C, Prodi A, Nardini C.

Bioinformatics. 2019 Feb 23. pii: btz134. doi: 10.1093/bioinformatics/btz134. [Epub ahead of print]

PMID:
30796811
2.

NET-GE: a web-server for NETwork-based human gene enrichment.

Bovo S, Di Lena P, Martelli PL, Fariselli P, Casadio R.

Bioinformatics. 2016 Nov 15;32(22):3489-3491. Epub 2016 Aug 2.

PMID:
27485441
3.

GOTA: GO term annotation of biomedical literature.

Di Lena P, Domeniconi G, Margara L, Moro G.

BMC Bioinformatics. 2015 Oct 28;16:346. doi: 10.1186/s12859-015-0777-8.

4.

Function and Regulation of Cph2 in Candida albicans.

Lane S, Di Lena P, Tormanen K, Baldi P, Liu H.

Eukaryot Cell. 2015 Nov;14(11):1114-26. doi: 10.1128/EC.00102-15. Epub 2015 Sep 4.

5.

NET-GE: a novel NETwork-based Gene Enrichment for detecting biological processes associated to Mendelian diseases.

Di Lena P, Martelli PL, Fariselli P, Casadio R.

BMC Genomics. 2015;16 Suppl 8:S6. doi: 10.1186/1471-2164-16-S8-S6. Epub 2015 Jun 18.

6.

Mechanotransduction map: simulation model, molecular pathway, gene set.

Dent JE, Devescovi V, Li H, Di Lena P, Lu Y, Liu Y, Nardini C.

Bioinformatics. 2015 Apr 1;31(7):1053-9. doi: 10.1093/bioinformatics/btu776. Epub 2014 Nov 25.

PMID:
25429059
7.

MIMO: an efficient tool for molecular interaction maps overlap.

Di Lena P, Wu G, Martelli PL, Casadio R, Nardini C.

BMC Bioinformatics. 2013 May 15;14:159. doi: 10.1186/1471-2105-14-159.

8.

Deep architectures for protein contact map prediction.

Di Lena P, Nagata K, Baldi P.

Bioinformatics. 2012 Oct 1;28(19):2449-57. Epub 2012 Jul 30.

9.

Genome-wide identification of Bcl11b gene targets reveals role in brain-derived neurotrophic factor signaling.

Tang B, Di Lena P, Schaffer L, Head SR, Baldi P, Thomas EA.

PLoS One. 2011;6(9):e23691. doi: 10.1371/journal.pone.0023691. Epub 2011 Sep 1.

10.

Blurring contact maps of thousands of proteins: what we can learn by reconstructing 3D structure.

Vassura M, Di Lena P, Margara L, Mirto M, Aloisio G, Fariselli P, Casadio R.

BioData Min. 2011 Jan 13;4(1):1. doi: 10.1186/1756-0381-4-1.

11.

Is there an optimal substitution matrix for contact prediction with correlated mutations?

Di Lena P, Fariselli P, Margara L, Vassura M, Casadio R.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Jul-Aug;8(4):1017-28. doi: 10.1109/TCBB.2010.91.

PMID:
20855922
12.

Fast overlapping of protein contact maps by alignment of eigenvectors.

Di Lena P, Fariselli P, Margara L, Vassura M, Casadio R.

Bioinformatics. 2010 Sep 15;26(18):2250-8. doi: 10.1093/bioinformatics/btq402. Epub 2010 Jul 7.

PMID:
20610612
13.

Reconstruction of 3D structures from protein contact maps.

Vassura M, Margara L, Di Lena P, Medri F, Fariselli P, Casadio R.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Jul-Sep;5(3):357-67. doi: 10.1109/TCBB.2008.27.

PMID:
18670040
14.

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps.

Vassura M, Margara L, Di Lena P, Medri F, Fariselli P, Casadio R.

Bioinformatics. 2008 May 15;24(10):1313-5. doi: 10.1093/bioinformatics/btn115. Epub 2008 Apr 1.

PMID:
18381401
15.

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