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Complete Genome Sequence of Strain PM004, a Novel Cultured Member of the Human Oral Microbiome from the Candidate Phylum Saccharibacteria (TM7).

Murugkar PP, Collins AJ, Dewhirst FE.

Microbiol Resour Announc. 2019 Oct 17;8(42). pii: e01159-19. doi: 10.1128/MRA.01159-19.


Complete Genome Sequence of Strain AC001, a Novel Cultured Member of the Human Oral Microbiome from the Candidate Phylum Saccharibacteria (TM7).

Collins AJ, Murugkar PP, Dewhirst FE.

Microbiol Resour Announc. 2019 Oct 17;8(42). pii: e01158-19. doi: 10.1128/MRA.01158-19.


Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome.

Bernstein DB, Dewhirst FE, Segrè D.

Elife. 2019 Jun 13;8. pii: e39733. doi: 10.7554/eLife.39733.


Biogeography of the Oral Microbiome: The Site-Specialist Hypothesis.

Mark Welch JL, Dewhirst FE, Borisy GG.

Annu Rev Microbiol. 2019 Sep 8;73:335-358. doi: 10.1146/annurev-micro-090817-062503. Epub 2019 Jun 10.


Systematic evasion of the restriction-modification barrier in bacteria.

Johnston CD, Cotton SL, Rittling SR, Starr JR, Borisy GG, Dewhirst FE, Lemon KP.

Proc Natl Acad Sci U S A. 2019 Jun 4;116(23):11454-11459. doi: 10.1073/pnas.1820256116. Epub 2019 May 16.


New Insights into Human Nostril Microbiome from the Expanded Human Oral Microbiome Database (eHOMD): a Resource for the Microbiome of the Human Aerodigestive Tract.

Escapa IF, Chen T, Huang Y, Gajare P, Dewhirst FE, Lemon KP.

mSystems. 2018 Dec 4;3(6). pii: e00187-18. doi: 10.1128/mSystems.00187-18. eCollection 2018 Nov-Dec.


Rapid evolution of decreased host susceptibility drives a stable relationship between ultrasmall parasite TM7x and its bacterial host.

Bor B, McLean JS, Foster KR, Cen L, To TT, Serrato-Guillen A, Dewhirst FE, Shi W, He X.

Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):12277-12282. doi: 10.1073/pnas.1810625115. Epub 2018 Nov 15.


Cargo transport shapes the spatial organization of a microbial community.

Shrivastava A, Patel VK, Tang Y, Yost SC, Dewhirst FE, Berg HC.

Proc Natl Acad Sci U S A. 2018 Aug 21;115(34):8633-8638. doi: 10.1073/pnas.1808966115. Epub 2018 Aug 6.


Functional profiles of coronal and dentin caries in children.

Kressirer CA, Chen T, Lake Harriman K, Frias-Lopez J, Dewhirst FE, Tavares MA, Tanner AC.

J Oral Microbiol. 2018 Jul 16;10(1):1495976. doi: 10.1080/20002297.2018.1495976. eCollection 2018.


Deposition and hydrolysis of serine dipeptide lipids of Bacteroidetes bacteria in human arteries: relationship to atherosclerosis.

Nemati R, Dietz C, Anstadt EJ, Cervantes J, Liu Y, Dewhirst FE, Clark RB, Finegold S, Gallagher JJ, Smith MB, Yao X, Nichols FC.

J Lipid Res. 2017 Oct;58(10):1999-2007. doi: 10.1194/jlr.M077792. Epub 2017 Aug 16.


Report of the National Heart, Lung, and Blood Institute Working Group on the Role of Microbiota in Blood Pressure Regulation: Current Status and Future Directions.

Raizada MK, Joe B, Bryan NS, Chang EB, Dewhirst FE, Borisy GG, Galis ZS, Henderson W, Jose PA, Ketchum CJ, Lampe JW, Pepine CJ, Pluznick JL, Raj D, Seals DR, Gioscia-Ryan RA, Tang WHW, Oh YS.

Hypertension. 2017 Jul 31. pii: HYPERTENSIONAHA.117.09699. doi: 10.1161/HYPERTENSIONAHA.117.09699. [Epub ahead of print] Review. No abstract available.


Synthesis of Sphingolipids Impacts Survival of Porphyromonas gingivalis and the Presentation of Surface Polysaccharides.

Moye ZD, Valiuskyte K, Dewhirst FE, Nichols FC, Davey ME.

Front Microbiol. 2016 Nov 29;7:1919. eCollection 2016.


The Oral Microbiome: Critical for Understanding Oral Health and Disease.

Dewhirst FE.

J Calif Dent Assoc. 2016 Jul;44(7):409-10. No abstract available.


First Cultivation of Health-Associated Tannerella sp. HOT-286 (BU063).

Vartoukian SR, Moazzez RV, Paster BJ, Dewhirst FE, Wade WG.

J Dent Res. 2016 Oct;95(11):1308-13. doi: 10.1177/0022034516651078. Epub 2016 May 18.


Helicobacter bilis and Helicobacter trogontum: infectious causes of abortion in sheep.

Gill J, Haydon TG, Rawdon TG, McFadden AM, Ha HJ, Shen Z, Feng Y, Pang J, Swennes AG, Paster BJ, Dewhirst FE, Fox JG, Spence RP.

J Vet Diagn Invest. 2016 May;28(3):225-34. doi: 10.1177/1040638716638704. Epub 2016 Mar 26.


Biogeography of a human oral microbiome at the micron scale.

Mark Welch JL, Rossetti BJ, Rieken CW, Dewhirst FE, Borisy GG.

Proc Natl Acad Sci U S A. 2016 Feb 9;113(6):E791-800. doi: 10.1073/pnas.1522149113. Epub 2016 Jan 25.


In Vitro Cultivation of 'Unculturable' Oral Bacteria, Facilitated by Community Culture and Media Supplementation with Siderophores.

Vartoukian SR, Adamowska A, Lawlor M, Moazzez R, Dewhirst FE, Wade WG.

PLoS One. 2016 Jan 14;11(1):e0146926. doi: 10.1371/journal.pone.0146926. eCollection 2016.


In vitro culture of previously uncultured oral bacterial phylotypes.

Thompson H, Rybalka A, Moazzez R, Dewhirst FE, Wade WG.

Appl Environ Microbiol. 2015 Dec;81(24):8307-14. doi: 10.1128/AEM.02156-15. Epub 2015 Sep 25.


A Novel α-Hemolytic Streptococcus Species (Streptococcus azizii sp. nov.) Associated with Meningoencephalitis in Naïve Weanling C57BL/6 Mice.

Braden GC, Arbona RR, Lepherd M, Monette S, Toma A, Fox JG, Dewhirst FE, Lipman NS.

Comp Med. 2015 Jun;65(3):186-95. Erratum in: Comp Med. 2017 Apr;67(2):180.


Draft Genome Sequence of Tannerella forsythia Type Strain ATCC 43037.

Friedrich V, Pabinger S, Chen T, Messner P, Dewhirst FE, Schäffer C.

Genome Announc. 2015 Jun 11;3(3). pii: e00660-15. doi: 10.1128/genomeA.00660-15.


Pulp and plaque microbiotas of children with severe early childhood caries.

Chalmers NI, Oh K, Hughes CV, Pradhan N, Kanasi E, Ehrlich Y, Dewhirst FE, Tanner AC.

J Oral Microbiol. 2015 Feb 3;7:25951. doi: 10.3402/jom.v7.25951. eCollection 2015.


The feline oral microbiome: a provisional 16S rRNA gene based taxonomy with full-length reference sequences.

Dewhirst FE, Klein EA, Bennett ML, Croft JM, Harris SJ, Marshall-Jones ZV.

Vet Microbiol. 2015 Feb 25;175(2-4):294-303. doi: 10.1016/j.vetmic.2014.11.019. Epub 2014 Dec 2.


Host-associated bacterial taxa from Chlorobi, Chloroflexi, GN02, Synergistetes, SR1, TM7, and WPS-2 Phyla/candidate divisions.

Camanocha A, Dewhirst FE.

J Oral Microbiol. 2014 Oct 8;6. doi: 10.3402/jom.v6.25468. eCollection 2014.


Pathogenic properties of enterohepatic Helicobacter spp. isolated from rhesus macaques with intestinal adenocarcinoma.

Lertpiriyapong K, Handt L, Feng Y, Mitchell TW, Lodge KE, Shen Z, Dewhirst FE, Muthupalani S, Fox JG.

J Med Microbiol. 2014 Jul;63(Pt 7):1004-16. doi: 10.1099/jmm.0.072462-0. Epub 2014 Apr 2.


Isolation of a Campylobacter lanienae-like bacterium from laboratory chinchillas (Chinchilla laniger).

Turowski EE, Shen Z, Ducore RM, Parry NM, Kirega A, Dewhirst FE, Fox JG.

Zoonoses Public Health. 2014 Dec;61(8):571-80. doi: 10.1111/zph.12107. Epub 2014 Mar 13.


Corynebacterium ulcerans in ferrets.

Marini RP, Cassiday PK, Venezia J, Shen Z, Buckley EM, Peters Y, Taylor N, Dewhirst FE, Tondella ML, Fox JG.

Emerg Infect Dis. 2014 Jan;20(1):159-61. doi: 10.3201/eid2001.130675. No abstract available.


Helicobacter canis colonization in sheep: a Zoonotic link.

Swennes AG, Turk ML, Trowel EM, Cullin C, Shen Z, Pang J, Petersson KH, Dewhirst FE, Fox JG.

Helicobacter. 2014 Feb;19(1):65-8. doi: 10.1111/hel.12097. Epub 2013 Nov 4.


A consortium of Aggregatibacter actinomycetemcomitans, Streptococcus parasanguinis, and Filifactor alocis is present in sites prior to bone loss in a longitudinal study of localized aggressive periodontitis.

Fine DH, Markowitz K, Fairlie K, Tischio-Bereski D, Ferrendiz J, Furgang D, Paster BJ, Dewhirst FE.

J Clin Microbiol. 2013 Sep;51(9):2850-61. doi: 10.1128/JCM.00729-13. Epub 2013 Jun 19.


The cultivable human oral gluten-degrading microbiome and its potential implications in coeliac disease and gluten sensitivity.

Fernandez-Feo M, Wei G, Blumenkranz G, Dewhirst FE, Schuppan D, Oppenheim FG, Helmerhorst EJ.

Clin Microbiol Infect. 2013 Sep;19(9):E386-94. doi: 10.1111/1469-0691.12249. Epub 2013 May 28.


Neisseria oralis sp. nov., isolated from healthy gingival plaque and clinical samples.

Wolfgang WJ, Passaretti TV, Jose R, Cole J, Coorevits A, Carpenter AN, Jose S, Van Landschoot A, Izard J, Kohlerschmidt DJ, Vandamme P, Dewhirst FE, Fisher MA, Musser KA.

Int J Syst Evol Microbiol. 2013 Apr;63(Pt 4):1323-8. doi: 10.1099/ijs.0.041731-0. Epub 2012 Jul 13.


Description of Alloprevotella rava gen. nov., sp. nov., isolated from the human oral cavity, and reclassification of Prevotella tannerae Moore et al. 1994 as Alloprevotella tannerae gen. nov., comb. nov.

Downes J, Dewhirst FE, Tanner AC, Wade WG.

Int J Syst Evol Microbiol. 2013 Apr;63(Pt 4):1214-8. doi: 10.1099/ijs.0.041376-0. Epub 2012 Jun 29.


Characterization of Corynebacterium species in macaques.

Venezia J, Cassiday PK, Marini RP, Shen Z, Buckley EM, Peters Y, Taylor N, Dewhirst FE, Tondella ML, Fox JG.

J Med Microbiol. 2012 Oct;61(Pt 10):1401-8. doi: 10.1099/jmm.0.045377-0. Epub 2012 Jun 21.


The canine oral microbiome.

Dewhirst FE, Klein EA, Thompson EC, Blanton JM, Chen T, Milella L, Buckley CM, Davis IJ, Bennett ML, Marshall-Jones ZV.

PLoS One. 2012;7(4):e36067. doi: 10.1371/journal.pone.0036067. Epub 2012 Apr 27. Erratum in: PLoS One. 2012;7(6). doi:10.1371/annotation/c2287fc7-c976-4d78-a28f-1d4e024d568f.


Impact of periodontal therapy on the subgingival microbiota of severe periodontitis: comparison between good responders and individuals with refractory periodontitis using the human oral microbe identification microarray.

Colombo AP, Bennet S, Cotton SL, Goodson JM, Kent R, Haffajee AD, Socransky SS, Hasturk H, Van Dyke TE, Dewhirst FE, Paster BJ.

J Periodontol. 2012 Oct;83(10):1279-87. Epub 2012 Feb 10.


Helicobacter marmotae and novel Helicobacter and Campylobacter species isolated from the livers and intestines of prairie dogs.

Beisele M, Shen Z, Parry N, Mobley M, Taylor NS, Buckley E, Abedin MZ, Dewhirst FE, Fox JG.

J Med Microbiol. 2011 Sep;60(Pt 9):1366-74. doi: 10.1099/jmm.0.032144-0. Epub 2011 May 5.


Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging.

Valm AM, Mark Welch JL, Rieken CW, Hasegawa Y, Sogin ML, Oldenbourg R, Dewhirst FE, Borisy GG.

Proc Natl Acad Sci U S A. 2011 Mar 8;108(10):4152-7. doi: 10.1073/pnas.1101134108. Epub 2011 Feb 16.


Cultivable anaerobic microbiota of severe early childhood caries.

Tanner AC, Mathney JM, Kent RL, Chalmers NI, Hughes CV, Loo CY, Pradhan N, Kanasi E, Hwang J, Dahlan MA, Papadopolou E, Dewhirst FE.

J Clin Microbiol. 2011 Apr;49(4):1464-74. doi: 10.1128/JCM.02427-10. Epub 2011 Feb 2.


Campylobacter troglodytis sp. nov., isolated from feces of human-habituated wild chimpanzees (Pan troglodytes schweinfurthii) in Tanzania.

Kaur T, Singh J, Huffman MA, Petrzelková KJ, Taylor NS, Xu S, Dewhirst FE, Paster BJ, Debruyne L, Vandamme P, Fox JG.

Appl Environ Microbiol. 2011 Apr;77(7):2366-73. doi: 10.1128/AEM.01840-09. Epub 2011 Jan 28.


Clonal analysis of the microbiota of severe early childhood caries.

Kanasi E, Dewhirst FE, Chalmers NI, Kent R Jr, Moore A, Hughes CV, Pradhan N, Loo CY, Tanner AC.

Caries Res. 2010;44(5):485-97. doi: 10.1159/000320158. Epub 2010 Sep 23.


The human oral microbiome.

Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, Yu WH, Lakshmanan A, Wade WG.

J Bacteriol. 2010 Oct;192(19):5002-17. doi: 10.1128/JB.00542-10. Epub 2010 Jul 23.


The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information.

Chen T, Yu WH, Izard J, Baranova OV, Lakshmanan A, Dewhirst FE.

Database (Oxford). 2010 Jul 6;2010:baq013. doi: 10.1093/database/baq013.


Persistent infection of rhesus monkeys with 'Helicobacter macacae' and its isolation from an animal with intestinal adenocarcinoma.

Marini RP, Muthupalani S, Shen Z, Buckley EM, Alvarado C, Taylor NS, Dewhirst FE, Whary MT, Patterson MM, Fox JG.

J Med Microbiol. 2010 Aug;59(Pt 8):961-9. doi: 10.1099/jmm.0.019117-0. Epub 2010 Apr 22.


Helicobacter pullorum outbreak in C57BL/6NTac and C3H/HeNTac barrier-maintained mice.

Boutin SR, Shen Z, Roesch PL, Stiefel SM, Sanderson AE, Multari HM, Pridhoko EA, Smith JC, Taylor NS, Lohmiller JJ, Dewhirst FE, Klein HJ, Fox JG.

J Clin Microbiol. 2010 May;48(5):1908-10. doi: 10.1128/JCM.02531-09. Epub 2010 Mar 10.


Gram-positive and gram-negative bacteria induce different patterns of cytokine production in human mononuclear cells irrespective of taxonomic relatedness.

Skovbjerg S, Martner A, Hynsjö L, Hessle C, Olsen I, Dewhirst FE, Tham W, Wold AE.

J Interferon Cytokine Res. 2010 Jan;30(1):23-32. doi: 10.1089/jir.2009.0033.


Prevotella saccharolytica sp. nov., isolated from the human oral cavity.

Downes J, Tanner AC, Dewhirst FE, Wade WG.

Int J Syst Evol Microbiol. 2010 Oct;60(Pt 10):2458-61. doi: 10.1099/ijs.0.014720-0. Epub 2009 Nov 27.


Molecular microbial diagnosis.

Paster BJ, Dewhirst FE.

Periodontol 2000. 2009;51:38-44. doi: 10.1111/j.1600-0757.2009.00316.x. Review. No abstract available.


Chronic hepatitis, hepatic dysplasia, fibrosis, and biliary hyperplasia in hamsters naturally infected with a novel Helicobacter classified in the H. bilis cluster.

Fox JG, Shen Z, Muthupalani S, Rogers AR, Kirchain SM, Dewhirst FE.

J Clin Microbiol. 2009 Nov;47(11):3673-81. doi: 10.1128/JCM.00879-09. Epub 2009 Sep 16.


Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity.

Downes J, Vartoukian SR, Dewhirst FE, Izard J, Chen T, Yu WH, Sutcliffe IC, Wade WG.

Int J Syst Evol Microbiol. 2009 May;59(Pt 5):972-80. doi: 10.1099/ijs.0.000364-0.


Phylogenetic diversity and temporal variation in the Spirochaeta populations from two Mediterranean microbial mats.

Berlanga M, Aas JA, Paster BJ, Boumenna T, Dewhirst FE, Guerrero R.

Int Microbiol. 2008 Dec;11(4):267-74.


Microbiological diversity of generalized aggressive periodontitis by 16S rRNA clonal analysis.

Faveri M, Mayer MP, Feres M, de Figueiredo LC, Dewhirst FE, Paster BJ.

Oral Microbiol Immunol. 2008 Apr;23(2):112-8. doi: 10.1111/j.1399-302X.2007.00397.x.


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