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Items: 30

1.

Engineering of a Histone-Recognition Domain in Dnmt3a Alters the Epigenetic Landscape and Phenotypic Features of Mouse ESCs.

Noh KM, Wang H, Kim HR, Wenderski W, Fang F, Li CH, Dewell S, Hughes SH, Melnick AM, Patel DJ, Li H, Allis CD.

Mol Cell. 2018 Feb 1;69(3):533. doi: 10.1016/j.molcel.2018.01.014. No abstract available.

2.

Polycomb repressive complex 2 (PRC2) silences genes responsible for neurodegeneration.

von Schimmelmann M, Feinberg PA, Sullivan JM, Ku SM, Badimon A, Duff MK, Wang Z, Lachmann A, Dewell S, Ma'ayan A, Han MH, Tarakhovsky A, Schaefer A.

Nat Neurosci. 2016 Oct;19(10):1321-30. doi: 10.1038/nn.4360. Epub 2016 Aug 15.

3.

Engineering of a Histone-Recognition Domain in Dnmt3a Alters the Epigenetic Landscape and Phenotypic Features of Mouse ESCs.

Noh KM, Wang H, Kim HR, Wenderski W, Fang F, Li CH, Dewell S, Hughes SH, Melnick AM, Patel DJ, Li H, Allis CD.

Mol Cell. 2015 Jul 2;59(1):89-103. doi: 10.1016/j.molcel.2015.05.017. Epub 2015 Jun 11. Erratum in: Mol Cell. 2018 Feb 1;69(3):533.

4.

RNA-Seq reveals differential gene expression in Staphylococcus aureus with single-nucleotide resolution.

Osmundson J, Dewell S, Darst SA.

PLoS One. 2013 Oct 7;8(10):e76572. doi: 10.1371/journal.pone.0076572. eCollection 2013.

5.

Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells.

Banaszynski LA, Wen D, Dewell S, Whitcomb SJ, Lin M, Diaz N, Elsässer SJ, Chapgier A, Goldberg AD, Canaani E, Rafii S, Zheng D, Allis CD.

Cell. 2013 Sep 26;155(1):107-20. doi: 10.1016/j.cell.2013.08.061.

6.

The yeast Snt2 protein coordinates the transcriptional response to hydrogen peroxide-mediated oxidative stress.

Baker LA, Ueberheide BM, Dewell S, Chait BT, Zheng D, Allis CD.

Mol Cell Biol. 2013 Oct;33(19):3735-48. doi: 10.1128/MCB.00025-13. Epub 2013 Jul 22.

7.

MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system.

Mellén M, Ayata P, Dewell S, Kriaucionis S, Heintz N.

Cell. 2012 Dec 21;151(7):1417-30. doi: 10.1016/j.cell.2012.11.022.

8.

FMRP targets distinct mRNA sequence elements to regulate protein expression.

Ascano M Jr, Mukherjee N, Bandaru P, Miller JB, Nusbaum JD, Corcoran DL, Langlois C, Munschauer M, Dewell S, Hafner M, Williams Z, Ohler U, Tuschl T.

Nature. 2012 Dec 20;492(7429):382-6. doi: 10.1038/nature11737. Epub 2012 Dec 12.

9.

Acute stress and hippocampal histone H3 lysine 9 trimethylation, a retrotransposon silencing response.

Hunter RG, Murakami G, Dewell S, Seligsohn M, Baker ME, Datson NA, McEwen BS, Pfaff DW.

Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17657-62. doi: 10.1073/pnas.1215810109. Epub 2012 Oct 4.

10.

Suppression of the antiviral response by an influenza histone mimic.

Marazzi I, Ho JS, Kim J, Manicassamy B, Dewell S, Albrecht RA, Seibert CW, Schaefer U, Jeffrey KL, Prinjha RK, Lee K, García-Sastre A, Roeder RG, Tarakhovsky A.

Nature. 2012 Mar 14;483(7390):428-33. doi: 10.1038/nature10892.

11.

Histone H3 lysine 9 di-methylation as an epigenetic signature of the interferon response.

Fang TC, Schaefer U, Mecklenbrauker I, Stienen A, Dewell S, Chen MS, Rioja I, Parravicini V, Prinjha RK, Chandwani R, MacDonald MR, Lee K, Rice CM, Tarakhovsky A.

J Exp Med. 2012 Apr 9;209(4):661-9. doi: 10.1084/jem.20112343. Epub 2012 Mar 12.

12.

Environmental DNA-encoded antibiotics fasamycins A and B inhibit FabF in type II fatty acid biosynthesis.

Feng Z, Chakraborty D, Dewell SB, Reddy BV, Brady SF.

J Am Chem Soc. 2012 Feb 15;134(6):2981-7. doi: 10.1021/ja207662w. Epub 2012 Feb 2.

13.

Transcriptional profiling of psoriasis using RNA-seq reveals previously unidentified differentially expressed genes.

Jabbari A, Suárez-Fariñas M, Dewell S, Krueger JG.

J Invest Dermatol. 2012 Jan;132(1):246-9. doi: 10.1038/jid.2011.267. Epub 2011 Aug 18. No abstract available.

14.

Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions.

Ruthenburg AJ, Li H, Milne TA, Dewell S, McGinty RK, Yuen M, Ueberheide B, Dou Y, Muir TW, Patel DJ, Allis CD.

Cell. 2011 May 27;145(5):692-706. doi: 10.1016/j.cell.2011.03.053. Epub 2011 May 19.

15.

Identifying mRNA editing deaminase targets by RNA-Seq.

Rosenberg BR, Dewell S, Papavasiliou FN.

Methods Mol Biol. 2011;718:103-19. doi: 10.1007/978-1-61779-018-8_6.

PMID:
21370044
16.

Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs.

Rosenberg BR, Hamilton CE, Mwangi MM, Dewell S, Papavasiliou FN.

Nat Struct Mol Biol. 2011 Feb;18(2):230-6. doi: 10.1038/nsmb.1975. Epub 2011 Jan 23. Erratum in: Nat Struct Mol Biol. 2012 Mar;19(3):364.

17.

Suppression of inflammation by a synthetic histone mimic.

Nicodeme E, Jeffrey KL, Schaefer U, Beinke S, Dewell S, Chung CW, Chandwani R, Marazzi I, Wilson P, Coste H, White J, Kirilovsky J, Rice CM, Lora JM, Prinjha RK, Lee K, Tarakhovsky A.

Nature. 2010 Dec 23;468(7327):1119-23. doi: 10.1038/nature09589. Epub 2010 Nov 10.

18.

ETV1 is a lineage survival factor that cooperates with KIT in gastrointestinal stromal tumours.

Chi P, Chen Y, Zhang L, Guo X, Wongvipat J, Shamu T, Fletcher JA, Dewell S, Maki RG, Zheng D, Antonescu CR, Allis CD, Sawyers CL.

Nature. 2010 Oct 14;467(7317):849-53. doi: 10.1038/nature09409. Epub 2010 Oct 3.

19.

Whole-exome sequencing-based discovery of STIM1 deficiency in a child with fatal classic Kaposi sarcoma.

Byun M, Abhyankar A, Lelarge V, Plancoulaine S, Palanduz A, Telhan L, Boisson B, Picard C, Dewell S, Zhao C, Jouanguy E, Feske S, Abel L, Casanova JL.

J Exp Med. 2010 Oct 25;207(11):2307-12. doi: 10.1084/jem.20101597. Epub 2010 Sep 27.

20.

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T.

J Vis Exp. 2010 Jul 2;(41). pii: 2034. doi: 10.3791/2034.

21.

Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites.

Siegel TN, Hekstra DR, Wang X, Dewell S, Cross GA.

Nucleic Acids Res. 2010 Aug;38(15):4946-57. doi: 10.1093/nar/gkq237. Epub 2010 Apr 12.

22.

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M Jr, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T.

Cell. 2010 Apr 2;141(1):129-41. doi: 10.1016/j.cell.2010.03.009.

23.

Distinct factors control histone variant H3.3 localization at specific genomic regions.

Goldberg AD, Banaszynski LA, Noh KM, Lewis PW, Elsaesser SJ, Stadler S, Dewell S, Law M, Guo X, Li X, Wen D, Chapgier A, DeKelver RC, Miller JC, Lee YL, Boydston EA, Holmes MC, Gregory PD, Greally JM, Rafii S, Yang C, Scambler PJ, Garrick D, Gibbons RJ, Higgs DR, Cristea IM, Urnov FD, Zheng D, Allis CD.

Cell. 2010 Mar 5;140(5):678-91. doi: 10.1016/j.cell.2010.01.003.

24.

Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei.

Siegel TN, Hekstra DR, Kemp LE, Figueiredo LM, Lowell JE, Fenyo D, Wang X, Dewell S, Cross GA.

Genes Dev. 2009 May 1;23(9):1063-76. doi: 10.1101/gad.1790409. Epub 2009 Apr 15.

25.

Genome sequencing and analysis reveals possible determinants of Staphylococcus aureus nasal carriage.

Sivaraman K, Venkataraman N, Tsai J, Dewell S, Cole AM.

BMC Genomics. 2008 Sep 22;9:433. doi: 10.1186/1471-2164-9-433.

26.

Genome sequencing in microfabricated high-density picolitre reactors.

Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM.

Nature. 2005 Sep 15;437(7057):376-80. Epub 2005 Jul 31. Erratum in: Nature. 2006 May 4;441(7089):120. Ho, Chun He [corrected to Ho, Chun Heen].

27.

Investigations of the genomic region that contains the clf1 mutation, a causal gene in multifactorial cleft lip and palate in mice.

Juriloff DM, Harris MJ, Dewell SL, Brown CJ, Mager DL, Gagnier L, Mah DG.

Birth Defects Res A Clin Mol Teratol. 2005 Feb;73(2):103-13.

PMID:
15690355
28.

A digenic cause of cleft lip in A-strain mice and definition of candidate genes for the two loci.

Juriloff DM, Harris MJ, Dewell SL.

Birth Defects Res A Clin Mol Teratol. 2004 Aug;70(8):509-18.

PMID:
15329828
29.

Multifactorial genetics of exencephaly in SELH/Bc mice.

Juriloff DM, Gunn TM, Harris MJ, Mah DG, Wu MK, Dewell SL.

Teratology. 2001 Oct;64(4):189-200.

PMID:
11598925
30.

What I learned from 14 years as a Medicare cop.

DeWell S.

Med Econ. 1991 Aug 19;68(16):42-6. No abstract available.

PMID:
10112345

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