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Items: 1 to 50 of 79

1.

High Density Genetic Maps of Seashore Paspalum Using Genotyping-By-Sequencing and Their Relationship to The Sorghum Bicolor Genome.

Qi P, Eudy D, Schnable JC, Schmutz J, Raymer PL, Devos KM.

Sci Rep. 2019 Aug 21;9(1):12183. doi: 10.1038/s41598-019-48257-3.

2.

Structural Characterization of ABCB1, the Gene Underlying the d2 Dwarf Phenotype in Pearl Millet, Cenchrus Americanus (L.) Morrone.

Parvathaneni RK, Spiekerman JJ, Zhou H, Wu X, Devos KM.

G3 (Bethesda). 2019 Aug 8;9(8):2497-2509. doi: 10.1534/g3.118.200846.

3.

Construction of the First SNP-Based Linkage Map Using Genotyping-by-Sequencing and Mapping of the Male-Sterility Gene in Leaf Chicory.

Palumbo F, Qi P, Pinto VB, Devos KM, Barcaccia G.

Front Plant Sci. 2019 Mar 11;10:276. doi: 10.3389/fpls.2019.00276. eCollection 2019.

4.

Reassessment of the evolution of wheat chromosomes 4A, 5A, and 7B.

Dvorak J, Wang L, Zhu T, Jorgensen CM, Luo MC, Deal KR, Gu YQ, Gill BS, Distelfeld A, Devos KM, Qi P, McGuire PE.

Theor Appl Genet. 2018 Nov;131(11):2451-2462. doi: 10.1007/s00122-018-3165-8. Epub 2018 Aug 23.

5.

QTL Mapping Combined With Comparative Analyses Identified Candidate Genes for Reduced Shattering in Setaria italica.

Odonkor S, Choi S, Chakraborty D, Martinez-Bello L, Wang X, Bahri BA, Tenaillon MI, Panaud O, Devos KM.

Front Plant Sci. 2018 Jul 19;9:918. doi: 10.3389/fpls.2018.00918. eCollection 2018.

6.

UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study.

Qi P, Gimode D, Saha D, Schröder S, Chakraborty D, Wang X, Dida MM, Malmberg RL, Devos KM.

BMC Plant Biol. 2018 Jun 15;18(1):117. doi: 10.1186/s12870-018-1316-3.

7.

Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.).

Bahri BA, Daverdin G, Xu X, Cheng JF, Barry KW, Brummer EC, Devos KM.

BMC Evol Biol. 2018 Jun 14;18(1):91. doi: 10.1186/s12862-018-1193-2.

8.

Structural variation and rates of genome evolution in the grass family seen through comparison of sequences of genomes greatly differing in size.

Dvorak J, Wang L, Zhu T, Jorgensen CM, Deal KR, Dai X, Dawson MW, Müller HG, Luo MC, Ramasamy RK, Dehghani H, Gu YQ, Gill BS, Distelfeld A, Devos KM, Qi P, You FM, Gulick PJ, McGuire PE.

Plant J. 2018 Aug;95(3):487-503. doi: 10.1111/tpj.13964. Epub 2018 Jun 17.

9.

Parallel loss of introns in the ABCB1 gene in angiosperms.

Parvathaneni RK, DeLeo VL, Spiekerman JJ, Chakraborty D, Devos KM.

BMC Evol Biol. 2017 Dec 4;17(1):238. doi: 10.1186/s12862-017-1077-x.

10.

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii.

Luo MC, Gu YQ, Puiu D, Wang H, Twardziok SO, Deal KR, Huo N, Zhu T, Wang L, Wang Y, McGuire PE, Liu S, Long H, Ramasamy RK, Rodriguez JC, Van SL, Yuan L, Wang Z, Xia Z, Xiao L, Anderson OD, Ouyang S, Liang Y, Zimin AV, Pertea G, Qi P, Bennetzen JL, Dai X, Dawson MW, Müller HG, Kugler K, Rivarola-Duarte L, Spannagl M, Mayer KFX, Lu FH, Bevan MW, Leroy P, Li P, You FM, Sun Q, Liu Z, Lyons E, Wicker T, Salzberg SL, Devos KM, Dvořák J.

Nature. 2017 Nov 23;551(7681):498-502. doi: 10.1038/nature24486. Epub 2017 Nov 15.

PMID:
29143815
11.

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta SK, Wang H, Jiang Y, Couderc M, Katta MAVSK, Paudel DR, Mungra KD, Chen W, Harris-Shultz KR, Garg V, Desai N, Doddamani D, Kane NA, Conner JA, Ghatak A, Chaturvedi P, Subramaniam S, Yadav OP, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya HD, Cubry P, Rhoné B, Gueye MC, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala RS, Singh B, Yadav RS, Lyons E, Datta SK, Hash CT, Devos KM, Buckler E, Bennetzen JL, Paterson AH, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif JC, Liu X, Vigouroux Y, Xu X.

Nat Biotechnol. 2017 Oct;35(10):969-976. doi: 10.1038/nbt.3943. Epub 2017 Sep 18.

12.

Recurrent loss of specific introns during angiosperm evolution.

Wang H, Devos KM, Bennetzen JL.

PLoS Genet. 2014 Dec 4;10(12):e1004843. doi: 10.1371/journal.pgen.1004843. eCollection 2014 Dec.

13.

Extensive pericentric rearrangements in the bread wheat (Triticum aestivum L.) genotype "Chinese Spring" revealed from chromosome shotgun sequence data.

Ma J, Stiller J, Wei Y, Zheng YL, Devos KM, Doležel J, Liu C.

Genome Biol Evol. 2014 Oct 27;6(11):3039-48. doi: 10.1093/gbe/evu237.

14.

Population genetics of Setaria viridis, a new model system.

Huang P, Feldman M, Schroder S, Bahri BA, Diao X, Zhi H, Estep M, Baxter I, Devos KM, Kellogg EA.

Mol Ecol. 2014 Oct;23(20):4912-25. doi: 10.1111/mec.12907. Epub 2014 Sep 22.

PMID:
25185718
15.

Association mapping, patterns of linkage disequilibrium and selection in the vicinity of the PHYTOCHROME C gene in pearl millet.

Saïdou AA, Clotault J, Couderc M, Mariac C, Devos KM, Thuillet AC, Amoukou IA, Vigouroux Y.

Theor Appl Genet. 2014 Jan;127(1):19-32. doi: 10.1007/s00122-013-2197-3. Epub 2013 Oct 10.

PMID:
24114050
16.

Fine-mapping and identification of a candidate gene underlying the d2 dwarfing phenotype in pearl millet, Cenchrus americanus (L.) Morrone.

Parvathaneni RK, Jakkula V, Padi FK, Faure S, Nagarajappa N, Pontaroli AC, Wu X, Bennetzen JL, Devos KM.

G3 (Bethesda). 2013 Mar;3(3):563-72. doi: 10.1534/g3.113.005587. Epub 2013 Mar 1.

17.

Genetic control and comparative genomic analysis of flowering time in Setaria (Poaceae).

Mauro-Herrera M, Wang X, Barbier H, Brutnell TP, Devos KM, Doust AN.

G3 (Bethesda). 2013 Feb;3(2):283-95. doi: 10.1534/g3.112.005207. Epub 2013 Feb 1.

18.

Insular organization of gene space in grass genomes.

Gottlieb A, Müller HG, Massa AN, Wanjugi H, Deal KR, You FM, Xu X, Gu YQ, Luo MC, Anderson OD, Chan AP, Rabinowicz P, Devos KM, Dvorak J.

PLoS One. 2013;8(1):e54101. doi: 10.1371/journal.pone.0054101. Epub 2013 Jan 11.

19.

Reference genome sequence of the model plant Setaria.

Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Barry K, Lindquist E, Hellsten U, Deshpande S, Wang X, Wu X, Mitros T, Triplett J, Yang X, Ye CY, Mauro-Herrera M, Wang L, Li P, Sharma M, Sharma R, Ronald PC, Panaud O, Kellogg EA, Brutnell TP, Doust AN, Tuskan GA, Rokhsar D, Devos KM.

Nat Biotechnol. 2012 May 13;30(6):555-61. doi: 10.1038/nbt.2196.

20.

Gene space dynamics during the evolution of Aegilops tauschii, Brachypodium distachyon, Oryza sativa, and Sorghum bicolor genomes.

Massa AN, Wanjugi H, Deal KR, O'Brien K, You FM, Maiti R, Chan AP, Gu YQ, Luo MC, Anderson OD, Rabinowicz PD, Dvorak J, Devos KM.

Mol Biol Evol. 2011 Sep;28(9):2537-47. doi: 10.1093/molbev/msr080. Epub 2011 Apr 6.

21.

Grass genome organization and evolution.

Devos KM.

Curr Opin Plant Biol. 2010 Apr;13(2):139-45. doi: 10.1016/j.pbi.2009.12.005. Epub 2010 Jan 11.

PMID:
20064738
22.

Foxtail millet: a sequence-driven grass model system.

Doust AN, Kellogg EA, Devos KM, Bennetzen JL.

Plant Physiol. 2009 Jan;149(1):137-41. doi: 10.1104/pp.108.129627. No abstract available.

23.

Frequent genic rearrangements in two regions of grass genomes identified by comparative sequence analysis.

Ramakrishna W, Ma J, Sanmiguel P, Emberton J, Dubcovsky J, Shiloff BA, Jiang Z, Rostoks N, Busso CS, Ogden M, Linton E, Kleinhofs A, Devos KM, Messing J, Bennetzen JL.

Comp Funct Genomics. 2002;3(2):165-6. doi: 10.1002/cfg.164. No abstract available.

24.

Comparative analyses reveal high levels of conserved colinearity between the finger millet and rice genomes.

Srinivasachary, Dida MM, Gale MD, Devos KM.

Theor Appl Genet. 2007 Aug;115(4):489-99. Epub 2007 Jul 10.

PMID:
17619853
25.

Fine mapping of the Pc locus of Sorghum bicolor, a gene controlling the reaction to a fungal pathogen and its host-selective toxin.

Nagy ED, Lee TC, Ramakrishna W, Xu Z, Klein PE, SanMiguel P, Cheng CP, Li J, Devos KM, Schertz K, Dunkle L, Bennetzen JL.

Theor Appl Genet. 2007 Apr;114(6):961-70. Epub 2007 Mar 14.

PMID:
17356869
26.

The genetic map of finger millet, Eleusine coracana.

Dida MM, Srinivasachary, Ramakrishnan S, Bennetzen JL, Gale MD, Devos KM.

Theor Appl Genet. 2007 Jan;114(2):321-32. Epub 2006 Nov 14.

PMID:
17103137
27.

Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat.

Devos KM, Ma J, Pontaroli AC, Pratt LH, Bennetzen JL.

Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):19243-8. Epub 2005 Dec 15.

28.

Function and transcript analysis of gibberellin-biosynthetic enzymes in wheat.

Appleford NE, Evans DJ, Lenton JR, Gaskin P, Croker SJ, Devos KM, Phillips AL, Hedden P.

Planta. 2006 Feb;223(3):568-82. Epub 2005 Sep 14.

PMID:
16160850
30.

Allelic variation at the linked AP1 and PhyC loci in hexaploid wheat is associated but not perfectly correlated with vernalization response.

Beales J, Laurie DA, Devos KM.

Theor Appl Genet. 2005 Apr;110(6):1099-107. Epub 2005 Mar 12.

PMID:
15765225
31.

Updating the 'crop circle'.

Devos KM.

Curr Opin Plant Biol. 2005 Apr;8(2):155-62. Review.

PMID:
15752995
32.

The genetic basis for inflorescence variation between foxtail and green millet (poaceae).

Doust AN, Devos KM, Gadberry MD, Gale MD, Kellogg EA.

Genetics. 2005 Mar;169(3):1659-72. Epub 2005 Jan 16.

33.

Mechanisms of recent genome size variation in flowering plants.

Bennetzen JL, Ma J, Devos KM.

Ann Bot. 2005 Jan;95(1):127-32.

34.

An integrated genetic map and a new set of simple sequence repeat markers for pearl millet, Pennisetum glaucum.

Qi X, Pittaway TS, Lindup S, Liu H, Waterman E, Padi FK, Hash CT, Zhu J, Gale MD, Devos KM.

Theor Appl Genet. 2004 Nov;109(7):1485-93. Epub 2004 Aug 18.

PMID:
15322756
35.

Genetic control of branching in foxtail millet.

Doust AN, Devos KM, Gadberry MD, Gale MD, Kellogg EA.

Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):9045-50. Epub 2004 Jun 7.

36.

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice.

Ma J, Devos KM, Bennetzen JL.

Genome Res. 2004 May;14(5):860-9. Epub 2004 Apr 12.

37.

A linkage map of meadow fescue ( Festuca pratensis Huds.) and comparative mapping with other Poaceae species.

Alm V, Fang C, Busso CS, Devos KM, Vollan K, Grieg Z, Rognli OA.

Theor Appl Genet. 2003 Dec;108(1):25-40. Epub 2003 Aug 16.

PMID:
12923626
38.
39.

Trends in comparative genetics and their potential impacts on wheat and barley research.

Laurie DA, Devos KM.

Plant Mol Biol. 2002 Mar-Apr;48(5-6):729-40. Review.

PMID:
11999846
40.

L-RCA (ligation-rolling circle amplification): a general method for genotyping of single nucleotide polymorphisms (SNPs).

Qi X, Bakht S, Devos KM, Gale MD, Osbourn A.

Nucleic Acids Res. 2001 Nov 15;29(22):E116.

41.

Development of simple sequence repeat markers from bacterial artificial chromosomes without subcloning.

Qi X, Lindup S, Pittaway TS, Allouis S, Gale MD, Devos KM.

Biotechniques. 2001 Aug;31(2):355, 358-62.

42.

Genome relationships: the grass model in current research.

Devos KM, Gale MD.

Plant Cell. 2000 May;12(5):637-46. Review. No abstract available.

43.

Chromosomal location of a Triticum timopheevii--derived powdery mildew resistance gene transferred to common wheat.

Järve K, Peusha HO, Tsymbalova J, Tamm S, Devos KM, Enno TM.

Genome. 2000 Apr;43(2):377-81.

PMID:
10791827
44.

Arabidopsis-rice: will colinearity allow gene prediction across the eudicot-monocot divide?

Devos KM, Beales J, Nagamura Y, Sasaki T.

Genome Res. 1999 Sep;9(9):825-9.

45.

'Green revolution' genes encode mutant gibberellin response modulators.

Peng J, Richards DE, Hartley NM, Murphy GP, Devos KM, Flintham JE, Beales J, Fish LJ, Worland AJ, Pelica F, Sudhakar D, Christou P, Snape JW, Gale MD, Harberd NP.

Nature. 1999 Jul 15;400(6741):256-61.

PMID:
10421366
46.

Plant comparative genetics after 10 years.

Gale MD, Devos KM.

Science. 1998 Oct 23;282(5389):656-9.

PMID:
9784118
47.

Comparative genetics in the grasses.

Gale MD, Devos KM.

Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):1971-4.

48.

Comparative genetics in the grasses.

Devos KM, Gale MD.

Plant Mol Biol. 1997 Sep;35(1-2):3-15. Review.

PMID:
9291955
49.

Cloning and genetic mapping of wheat telomere-associated sequences.

Mao L, Devos KM, Zhu L, Gale MD.

Mol Gen Genet. 1997 May 20;254(5):584-91.

PMID:
9197419
50.

The effect of genome and sex on recombination rates in Pennisetum species.

Liu CJ, Devos KM, Witcombe JR, Pittaway TS, Gale MD.

Theor Appl Genet. 1996 Oct;93(5-6):902-8. doi: 10.1007/BF00224092.

PMID:
24162424

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