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Activation of the PhoPR-Mediated Response to Phosphate Limitation Is Regulated by Wall Teichoic Acid Metabolism in Bacillus subtilis.

Devine KM.

Front Microbiol. 2018 Nov 6;9:2678. doi: 10.3389/fmicb.2018.02678. eCollection 2018. Review.


On the formation of fold-type oscillation marks in the continuous casting of steel.

Vynnycky M, Saleem S, Devine KM, Florio BJ, Mitchell SL, O'Brien SBG.

R Soc Open Sci. 2017 Jun 7;4(6):170062. doi: 10.1098/rsos.170062. eCollection 2017 Jun.


Single gene locus changes perturb complex microbial communities as much as apex predator loss.

McClean D, McNally L, Salzberg LI, Devine KM, Brown SP, Donohue I.

Nat Commun. 2015 Sep 10;6:8235. doi: 10.1038/ncomms9235.


Genome-wide analysis of phosphorylated PhoP binding to chromosomal DNA reveals several novel features of the PhoPR-mediated phosphate limitation response in Bacillus subtilis.

Salzberg LI, Botella E, Hokamp K, Antelmann H, Maaß S, Becher D, Noone D, Devine KM.

J Bacteriol. 2015 Apr;197(8):1492-506. doi: 10.1128/JB.02570-14. Epub 2015 Feb 9.


PhoR autokinase activity is controlled by an intermediate in wall teichoic acid metabolism that is sensed by the intracellular PAS domain during the PhoPR-mediated phosphate limitation response of Bacillus subtilis.

Botella E, Devine SK, Hubner S, Salzberg LI, Gale RT, Brown ED, Link H, Sauer U, Codée JD, Noone D, Devine KM.

Mol Microbiol. 2014 Dec;94(6):1242-59. doi: 10.1111/mmi.12833. Epub 2014 Nov 11.


A highly unstable transcript makes CwlO D,L-endopeptidase expression responsive to growth conditions in Bacillus subtilis.

Noone D, Salzberg LI, Botella E, Bäsell K, Becher D, Antelmann H, Devine KM.

J Bacteriol. 2014 Jan;196(2):237-47. doi: 10.1128/JB.00986-13. Epub 2013 Oct 25.


The WalRK (YycFG) and σ(I) RsgI regulators cooperate to control CwlO and LytE expression in exponentially growing and stressed Bacillus subtilis cells.

Salzberg LI, Powell L, Hokamp K, Botella E, Noone D, Devine KM.

Mol Microbiol. 2013 Jan;87(1):180-95. doi: 10.1111/mmi.12092. Epub 2012 Nov 30.


ATP forms a stable complex with the essential histidine kinase WalK (YycG) domain.

Celikel R, Veldore VH, Mathews I, Devine KM, Varughese KI.

Acta Crystallogr D Biol Crystallogr. 2012 Jul;68(Pt 7):839-45. doi: 10.1107/S090744491201373X. Epub 2012 Jun 15.


Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.

Nicolas P, Mäder U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, Bidnenko E, Marchadier E, Hoebeke M, Aymerich S, Becher D, Bisicchia P, Botella E, Delumeau O, Doherty G, Denham EL, Fogg MJ, Fromion V, Goelzer A, Hansen A, Härtig E, Harwood CR, Homuth G, Jarmer H, Jules M, Klipp E, Le Chat L, Lecointe F, Lewis P, Liebermeister W, March A, Mars RA, Nannapaneni P, Noone D, Pohl S, Rinn B, Rügheimer F, Sappa PK, Samson F, Schaffer M, Schwikowski B, Steil L, Stülke J, Wiegert T, Devine KM, Wilkinson AJ, van Dijl JM, Hecker M, Völker U, Bessières P, Noirot P.

Science. 2012 Mar 2;335(6072):1103-6. doi: 10.1126/science.1206848.


Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.

Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Le Chat L, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn B, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U.

Science. 2012 Mar 2;335(6072):1099-103. doi: 10.1126/science.1206871.


Signal perception by the secretion stress-responsive CssRS two-component system in Bacillus subtilis.

Noone D, Botella E, Butler C, Hansen A, Jende I, Devine KM.

J Bacteriol. 2012 Apr;194(7):1800-14. doi: 10.1128/JB.05767-11. Epub 2012 Feb 3.


Bacterial L-forms on tap: an improved methodology to generate Bacillus subtilis L-forms heralds a new era of research.

Devine KM.

Mol Microbiol. 2012 Jan;83(1):10-3. doi: 10.1111/j.1365-2958.2011.07922.x. Epub 2011 Nov 29.


Cell envelope gene expression in phosphate-limited Bacillus subtilis cells.

Botella E, Hübner S, Hokamp K, Hansen A, Bisicchia P, Noone D, Powell L, Salzberg LI, Devine KM.

Microbiology. 2011 Sep;157(Pt 9):2470-84. doi: 10.1099/mic.0.049205-0. Epub 2011 Jun 2.


Acquisition of VanB-type vancomycin resistance by Bacillus subtilis: the impact on gene expression, cell wall composition and morphology.

Bisicchia P, Bui NK, Aldridge C, Vollmer W, Devine KM.

Mol Microbiol. 2011 Jul;81(1):157-78. doi: 10.1111/j.1365-2958.2011.07684.x. Epub 2011 May 19.


Suite of novel vectors for ectopic insertion of GFP, CFP and IYFP transcriptional fusions in single copy at the amyE and bglS loci in Bacillus subtilis.

Bisicchia P, Botella E, Devine KM.

Plasmid. 2010 Nov;64(3):143-9. doi: 10.1016/j.plasmid.2010.06.002. Epub 2010 Jun 18.


Peptidoglycan metabolism is controlled by the WalRK (YycFG) and PhoPR two-component systems in phosphate-limited Bacillus subtilis cells.

Bisicchia P, Lioliou E, Noone D, Salzberg LI, Botella E, Hübner S, Devine KM.

Mol Microbiol. 2010 Feb;75(4):972-89. doi: 10.1111/j.1365-2958.2009.07036.x.


pBaSysBioII: an integrative plasmid generating gfp transcriptional fusions for high-throughput analysis of gene expression in Bacillus subtilis.

Botella E, Fogg M, Jules M, Piersma S, Doherty G, Hansen A, Denham EL, Le Chat L, Veiga P, Bailey K, Lewis PJ, van Dijl JM, Aymerich S, Wilkinson AJ, Devine KM.

Microbiology. 2010 Jun;156(Pt 6):1600-8. doi: 10.1099/mic.0.035758-0. Epub 2010 Feb 11.


Glenohumeral internal rotation measurements differ depending on stabilization techniques.

Wilk KE, Reinold MM, Macrina LC, Porterfield R, Devine KM, Suarez K, Andrews JR.

Sports Health. 2009 Mar;1(2):131-6.


A matter of life and death: cell wall homeostasis and the WalKR (YycGF) essential signal transduction pathway.

Dubrac S, Bisicchia P, Devine KM, Msadek T.

Mol Microbiol. 2008 Dec;70(6):1307-22. doi: 10.1111/j.1365-2958.2008.06483.x. Epub 2008 Oct 23. Review.


Genetic or chemical protease inhibition causes significant changes in the Bacillus subtilis exoproteome.

Westers L, Westers H, Zanen G, Antelmann H, Hecker M, Noone D, Devine KM, van Dijl JM, Quax WJ.

Proteomics. 2008 Jul;8(13):2704-13. doi: 10.1002/pmic.200800009.


S1P induced changes in epithelial ovarian cancer proteolysis, invasion, and attachment are mediated by Gi and Rac.

Devine KM, Smicun Y, Hope JM, Fishman DA.

Gynecol Oncol. 2008 Aug;110(2):237-45. doi: 10.1016/j.ygyno.2008.04.013. Epub 2008 May 29.


From one amino acid to another: tRNA-dependent amino acid biosynthesis.

Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Söll D.

Nucleic Acids Res. 2008 Apr;36(6):1813-25. doi: 10.1093/nar/gkn015. Epub 2008 Feb 5. Review.


The essential YycFG two-component system controls cell wall metabolism in Bacillus subtilis.

Bisicchia P, Noone D, Lioliou E, Howell A, Quigley S, Jensen T, Jarmer H, Devine KM.

Mol Microbiol. 2007 Jul;65(1):180-200.


Rehabilitation of articular lesions in the athlete's knee.

Wilk KE, Briem K, Reinold MM, Devine KM, Dugas J, Andrews JR.

J Orthop Sports Phys Ther. 2006 Oct;36(10):815-27. Review.


Stationary-phase expression and aminoacylation of a transfer-RNA-like small RNA.

Ataide SF, Jester BC, Devine KM, Ibba M.

EMBO Rep. 2005 Aug;6(8):742-7.


Genome update: base skews in 200+ bacterial chromosomes.

Hallin PF, Nielsen N, Devine KM, Binnewies TT, Willenbrock H, Ussery DW.

Microbiology. 2005 Mar;151(Pt 3):633-7. No abstract available.


Nonorthologous replacement of lysyl-tRNA synthetase prevents addition of lysine analogues to the genetic code.

Jester BC, Levengood JD, Roy H, Ibba M, Devine KM.

Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14351-6. Epub 2003 Nov 17.


Genome engineering reveals large dispensable regions in Bacillus subtilis.

Westers H, Dorenbos R, van Dijl JM, Kabel J, Flanagan T, Devine KM, Jude F, Seror SJ, Beekman AC, Darmon E, Eschevins C, de Jong A, Bron S, Kuipers OP, Albertini AM, Antelmann H, Hecker M, Zamboni N, Sauer U, Bruand C, Ehrlich DS, Alonso JC, Salas M, Quax WJ.

Mol Biol Evol. 2003 Dec;20(12):2076-90. Epub 2003 Aug 29.


The extracellular proteome of Bacillus subtilis under secretion stress conditions.

Antelmann H, Darmon E, Noone D, Veening JW, Westers H, Bron S, Kuipers OP, Devine KM, Hecker M, van Dijl JM.

Mol Microbiol. 2003 Jul;49(1):143-56.


A novel class of heat and secretion stress-responsive genes is controlled by the autoregulated CssRS two-component system of Bacillus subtilis.

Darmon E, Noone D, Masson A, Bron S, Kuipers OP, Devine KM, van Dijl JM.

J Bacteriol. 2002 Oct;184(20):5661-71.


Identification of a DNA nonhomologous end-joining complex in bacteria.

Weller GR, Kysela B, Roy R, Tonkin LM, Scanlan E, Della M, Devine SK, Day JP, Wilkinson A, d'Adda di Fagagna F, Devine KM, Bowater RP, Jeggo PA, Jackson SP, Doherty AJ.

Science. 2002 Sep 6;297(5587):1686-9.


Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases.

Lafay B, Lloyd AT, McLean MJ, Devine KM, Sharp PM, Wolfe KH.

Nucleic Acids Res. 1999 Apr 1;27(7):1642-9.


Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes.

McLean MJ, Wolfe KH, Devine KM.

J Mol Evol. 1998 Dec;47(6):691-6.


One of two osmC homologs in Bacillus subtilis is part of the sigmaB-dependent general stress regulon.

Völker U, Andersen KK, Antelmann H, Devine KM, Hecker M.

J Bacteriol. 1998 Aug;180(16):4212-8.


Lysis genes of the Bacillus subtilis defective prophage PBSX.

Krogh S, Jørgensen ST, Devine KM.

J Bacteriol. 1998 Apr;180(8):2110-7.


The complete genome sequence of the gram-positive bacterium Bacillus subtilis.

Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, Azevedo V, Bertero MG, Bessières P, Bolotin A, Borchert S, Borriss R, Boursier L, Brans A, Braun M, Brignell SC, Bron S, Brouillet S, Bruschi CV, Caldwell B, Capuano V, Carter NM, Choi SK, Cordani JJ, Connerton IF, Cummings NJ, Daniel RA, Denziot F, Devine KM, Düsterhöft A, Ehrlich SD, Emmerson PT, Entian KD, Errington J, Fabret C, Ferrari E, Foulger D, Fritz C, Fujita M, Fujita Y, Fuma S, Galizzi A, Galleron N, Ghim SY, Glaser P, Goffeau A, Golightly EJ, Grandi G, Guiseppi G, Guy BJ, Haga K, Haiech J, Harwood CR, Hènaut A, Hilbert H, Holsappel S, Hosono S, Hullo MF, Itaya M, Jones L, Joris B, Karamata D, Kasahara Y, Klaerr-Blanchard M, Klein C, Kobayashi Y, Koetter P, Koningstein G, Krogh S, Kumano M, Kurita K, Lapidus A, Lardinois S, Lauber J, Lazarevic V, Lee SM, Levine A, Liu H, Masuda S, Mauël C, Médigue C, Medina N, Mellado RP, Mizuno M, Moestl D, Nakai S, Noback M, Noone D, O'Reilly M, Ogawa K, Ogiwara A, Oudega B, Park SH, Parro V, Pohl TM, Portelle D, Porwollik S, Prescott AM, Presecan E, Pujic P, Purnelle B, Rapoport G, Rey M, Reynolds S, Rieger M, Rivolta C, Rocha E, Roche B, Rose M, Sadaie Y, Sato T, Scanlan E, Schleich S, Schroeter R, Scoffone F, Sekiguchi J, Sekowska A, Seror SJ, Serror P, Shin BS, Soldo B, Sorokin A, Tacconi E, Takagi T, Takahashi H, Takemaru K, Takeuchi M, Tamakoshi A, Tanaka T, Terpstra P, Togoni A, Tosato V, Uchiyama S, Vandebol M, Vannier F, Vassarotti A, Viari A, Wambutt R, Wedler H, Weitzenegger T, Winters P, Wipat A, Yamamoto H, Yamane K, Yasumoto K, Yata K, Yoshida K, Yoshikawa HF, Zumstein E, Yoshikawa H, Danchin A.

Nature. 1997 Nov 20;390(6657):249-56.


Bacterial genomes: a TIGR in the tank.

Devine KM, Wolfe K.

Trends Genet. 1995 Nov;11(11):429-31. Review. No abstract available.


The Bacillus subtilis genome project: aims and progress.

Devine KM.

Trends Biotechnol. 1995 Jun;13(6):210-6. Review.


Genetic control of bacterial suicide: regulation of the induction of PBSX in Bacillus subtilis.

McDonnell GE, Wood H, Devine KM, McConnell DJ.

J Bacteriol. 1994 Sep;176(18):5820-30.


Analysis of a ribose transport operon from Bacillus subtilis.

Woodson K, Devine KM.

Microbiology. 1994 Aug;140 ( Pt 8):1829-38.


Sequence and analysis of the citrulline biosynthetic operon argC-F from Bacillus subtilis.

O'Reilly M, Devine KM.

Microbiology. 1994 May;140 ( Pt 5):1023-5.


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