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Items: 17


Insights into mammalian transcription control by systematic analysis of ChIP sequencing data.

Devailly G, Joshi A.

BMC Bioinformatics. 2018 Nov 20;19(Suppl 14):409. doi: 10.1186/s12859-018-2377-x.


Causal Transcription Regulatory Network Inference Using Enhancer Activity as a Causal Anchor.

Vipin D, Wang L, Devailly G, Michoel T, Joshi A.

Int J Mol Sci. 2018 Nov 15;19(11). pii: E3609. doi: 10.3390/ijms19113609.


Dynamics of promoter bivalency and RNAP II pausing in mouse stem and differentiated cells.

Mantsoki A, Devailly G, Joshi A.

BMC Dev Biol. 2018 Feb 20;18(1):2. doi: 10.1186/s12861-018-0163-7.


Meta-analysis of Liver and Heart Transcriptomic Data for Functional Annotation Transfer in Mammalian Orthologs.

Reyes PFL, Michoel T, Joshi A, Devailly G.

Comput Struct Biotechnol J. 2017 Aug 26;15:425-432. doi: 10.1016/j.csbj.2017.08.002. eCollection 2017.


DNA methylation signal has a major role in the response of human breast cancer cells to the microenvironment.

Mathot P, Grandin M, Devailly G, Souaze F, Cahais V, Moran S, Campone M, Herceg Z, Esteller M, Juin P, Mehlen P, Dante R.

Oncogenesis. 2017 Oct 23;6(10):e390. doi: 10.1038/oncsis.2017.88.


Delineating biological and technical variance in single cell expression data.

Arzalluz-Luque Á, Devailly G, Mantsoki A, Joshi A.

Int J Biochem Cell Biol. 2017 Sep;90:161-166. doi: 10.1016/j.biocel.2017.07.006. Epub 2017 Jul 15. Review.


Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data.

Devailly G, Mantsoki A, Joshi A.

Bioinformatics. 2016 Nov 1;32(21):3354-3356. Epub 2016 Jul 4.


Inhibition of DNA methylation promotes breast tumor sensitivity to netrin-1 interference.

Grandin M, Mathot P, Devailly G, Bidet Y, Ghantous A, Favrot C, Gibert B, Gadot N, Puisieux I, Herceg Z, Delcros JG, Bernet A, Mehlen P, Dante R.

EMBO Mol Med. 2016 Aug 1;8(8):863-77. doi: 10.15252/emmm.201505945. Print 2016 Aug.


Corrigendum: CpG island erosion, polycomb occupancy and sequence motif enrichment at bivalent promoters in mammalian embryonic stem cells.

Mantsoki A, Devailly G, Joshi A.

Sci Rep. 2016 May 23;6:25682. doi: 10.1038/srep25682. No abstract available.


The PLA2R1-JAK2 pathway upregulates ERRα and its mitochondrial program to exert tumor-suppressive action.

Griveau A, Devailly G, Eberst L, Navaratnam N, Le Calvé B, Ferrand M, Faull P, Augert A, Dante R, Vanacker JM, Vindrieux D, Bernard D.

Oncogene. 2016 Sep 22;35(38):5033-42. doi: 10.1038/onc.2016.43. Epub 2016 Apr 4.


Gene expression variability in mammalian embryonic stem cells using single cell RNA-seq data.

Mantsoki A, Devailly G, Joshi A.

Comput Biol Chem. 2016 Aug;63:52-61. doi: 10.1016/j.compbiolchem.2016.02.004. Epub 2016 Feb 18.


Variable reproducibility in genome-scale public data: A case study using ENCODE ChIP sequencing resource.

Devailly G, Mantsoki A, Michoel T, Joshi A.

FEBS Lett. 2015 Dec 21;589(24 Pt B):3866-70. doi: 10.1016/j.febslet.2015.11.027. Epub 2015 Nov 24.


TIF1γ Suppresses Tumor Progression by Regulating Mitotic Checkpoints and Chromosomal Stability.

Pommier RM, Gout J, Vincent DF, Alcaraz LB, Chuvin N, Arfi V, Martel S, Kaniewski B, Devailly G, Fourel G, Bernard P, Moyret-Lalle C, Ansieau S, Puisieux A, Valcourt U, Sentis S, Bartholin L.

Cancer Res. 2015 Oct 15;75(20):4335-50. doi: 10.1158/0008-5472.CAN-14-3426. Epub 2015 Aug 17.


Dynamics of MBD2 deposition across methylated DNA regions during malignant transformation of human mammary epithelial cells.

Devailly G, Grandin M, Perriaud L, Mathot P, Delcros JG, Bidet Y, Morel AP, Bignon JY, Puisieux A, Mehlen P, Dante R.

Nucleic Acids Res. 2015 Jul 13;43(12):5838-54. doi: 10.1093/nar/gkv508. Epub 2015 May 24.


Repression of PLA2R1 by c-MYC and HIF-2alpha promotes cancer growth.

Vindrieux D, Devailly G, Augert A, Le Calvé B, Ferrand M, Pigny P, Payen L, Lambeau G, Perrais M, Aubert S, Simonnet H, Dante R, Bernard D.

Oncotarget. 2014 Feb 28;5(4):1004-13.


Combining chemotherapeutic agents and netrin-1 interference potentiates cancer cell death.

Paradisi A, Creveaux M, Gibert B, Devailly G, Redoulez E, Neves D, Cleyssac E, Treilleux I, Klein C, Niederfellner G, Cassier PA, Bernet A, Mehlen P.

EMBO Mol Med. 2013 Dec;5(12):1821-34. doi: 10.1002/emmm.201302654. Epub 2013 Oct 8.

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