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Items: 1 to 50 of 51

1.

Metagenomic Analysis of Microdissected Valvular Tissue for Etiologic Diagnosis of Blood Culture Negative Endocarditis.

Million M, Gaudin M, Melenotte C, Chasson L, Edouard S, Verdonk C, Prudent E, Amphoux B, Meresse S, Dorent R, Lepidi H, La Scola B, Gorvel JP, Desnues C, Raoult D.

Clin Infect Dis. 2019 Jul 15. pii: ciz655. doi: 10.1093/cid/ciz655. [Epub ahead of print]

PMID:
31309973
2.

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.

Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE.

Nat Microbiol. 2019 Oct;4(10):1727-1736. doi: 10.1038/s41564-019-0494-6. Epub 2019 Jul 8.

PMID:
31285584
3.

Discovery and Further Studies on Giant Viruses at the IHU Mediterranee Infection That Modified the Perception of the Virosphere.

Rolland C, Andreani J, Louazani AC, Aherfi S, Francis R, Rodrigues R, Silva LS, Sahmi D, Mougari S, Chelkha N, Bekliz M, Silva L, Assis F, Dornas F, Khalil JYB, Pagnier I, Desnues C, Levasseur A, Colson P, Abrahão J, La Scola B.

Viruses. 2019 Mar 30;11(4). pii: E312. doi: 10.3390/v11040312. Review.

4.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

5.

Hybrid Capture-Based Next Generation Sequencing and Its Application to Human Infectious Diseases.

Gaudin M, Desnues C.

Front Microbiol. 2018 Nov 27;9:2924. doi: 10.3389/fmicb.2018.02924. eCollection 2018.

6.

Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline.

Rascovan N, Sjögren KG, Kristiansen K, Nielsen R, Willerslev E, Desnues C, Rasmussen S.

Cell. 2019 Jan 10;176(1-2):295-305.e10. doi: 10.1016/j.cell.2018.11.005. Epub 2018 Dec 6.

7.

Therapeutic Potential of a New Jumbo Phage That Infects Vibrio coralliilyticus, a Widespread Coral Pathogen.

Jacquemot L, Bettarel Y, Monjol J, Corre E, Halary S, Desnues C, Bouvier T, Ferrier-Pagès C, Baudoux AC.

Front Microbiol. 2018 Oct 24;9:2501. doi: 10.3389/fmicb.2018.02501. eCollection 2018.

8.

Protocol for Generating Infectious RNA Viromes from Complex Biological Samples.

Monteil-Bouchard S, Temmam S, Desnues C.

Methods Mol Biol. 2018;1838:25-36. doi: 10.1007/978-1-4939-8682-8_3.

PMID:
30128987
9.

Detection of novel RNA viruses from free-living gorillas, Republic of the Congo: genetic diversity of picobirnaviruses.

Duraisamy R, Akiana J, Davoust B, Mediannikov O, Michelle C, Robert C, Parra HJ, Raoult D, Biagini P, Desnues C.

Virus Genes. 2018 Apr;54(2):256-271. doi: 10.1007/s11262-018-1543-6. Epub 2018 Feb 23.

10.

Tracing back ancient oral microbiomes and oral pathogens using dental pulps from ancient teeth.

Rascovan N, Huynh H, Chouin G, Adekola K, Georges-Zimmermann P, Signoli M, Desfosses Y, Aboudharam G, Drancourt M, Desnues C.

NPJ Biofilms Microbiomes. 2016 Dec 7;2:6. doi: 10.1038/s41522-016-0008-8. eCollection 2016.

11.

Novel Single-Stranded DNA Circular Viruses in Pericardial Fluid of Patient with Recurrent Pericarditis.

Halary S, Duraisamy R, Fancello L, Monteil-Bouchard S, Jardot P, Biagini P, Gouriet F, Raoult D, Desnues C.

Emerg Infect Dis. 2016 Oct;22(10):1839-41. doi: 10.3201/eid2210.160052. No abstract available.

12.

[Ancient Yersinia pestis genomes for tracing the origins and spreading of plague past epidemics].

Rascovan N, Drancourt M, Desnues C.

Med Sci (Paris). 2016 8-9;32(8-9):681-3. doi: 10.1051/medsci/20163208007. Epub 2016 Sep 12. French. No abstract available.

13.

Metagenomics and the Human Virome in Asymptomatic Individuals.

Rascovan N, Duraisamy R, Desnues C.

Annu Rev Microbiol. 2016 Sep 8;70:125-41. doi: 10.1146/annurev-micro-102215-095431. Review.

PMID:
27607550
14.

Exploring divergent antibiotic resistance genes in ancient metagenomes and discovery of a novel beta-lactamase family.

Rascovan N, Telke A, Raoult D, Rolain JM, Desnues C.

Environ Microbiol Rep. 2016 Oct;8(5):886-895. doi: 10.1111/1758-2229.12453. Epub 2016 Aug 26.

PMID:
27518706
15.

Characterization of Viral Communities of Biting Midges and Identification of Novel Thogotovirus Species and Rhabdovirus Genus.

Temmam S, Monteil-Bouchard S, Robert C, Baudoin JP, Sambou M, Aubadie-Ladrix M, Labas N, Raoult D, Mediannikov O, Desnues C.

Viruses. 2016 Mar 11;8(3):77. doi: 10.3390/v8030077.

16.

Human Polyomavirus-6 Infecting Lymph Nodes of a Patient With an Angiolymphoid Hyperplasia With Eosinophilia or Kimura Disease.

Rascovan N, Monteil Bouchard S, Grob JJ, Collet-Villette AM, Gaudy-Marqueste C, Penicaud M, Lepidi H, Raoult D, Desnues C.

Clin Infect Dis. 2016 Jun 1;62(11):1419-21. doi: 10.1093/cid/ciw135. Epub 2016 Mar 8.

PMID:
26962076
17.

Screening for Viral Pathogens in African Simian Bushmeat Seized at A French Airport.

Temmam S, Davoust B, Chaber AL, Lignereux Y, Michelle C, Monteil-Bouchard S, Raoult D, Desnues C.

Transbound Emerg Dis. 2017 Aug;64(4):1159-1167. doi: 10.1111/tbed.12481. Epub 2016 Feb 14.

PMID:
26876732
18.

Viral metagenomics: are we missing the giants?

Halary S, Temmam S, Raoult D, Desnues C.

Curr Opin Microbiol. 2016 Jun;31:34-43. doi: 10.1016/j.mib.2016.01.005. Epub 2016 Feb 3. Review.

PMID:
26851442
19.

Faustovirus-Like Asfarvirus in Hematophagous Biting Midges and Their Vertebrate Hosts.

Temmam S, Monteil-Bouchard S, Sambou M, Aubadie-Ladrix M, Azza S, Decloquement P, Khalil JY, Baudoin JP, Jardot P, Robert C, La Scola B, Mediannikov OY, Raoult D, Desnues C.

Front Microbiol. 2015 Dec 16;6:1406. doi: 10.3389/fmicb.2015.01406. eCollection 2015.

20.

Host-Associated Metagenomics: A Guide to Generating Infectious RNA Viromes.

Temmam S, Monteil-Bouchard S, Robert C, Pascalis H, Michelle C, Jardot P, Charrel R, Raoult D, Desnues C.

PLoS One. 2015 Oct 2;10(10):e0139810. doi: 10.1371/journal.pone.0139810. eCollection 2015.

21.

High occurrence of viruses in the mucus layer of scleractinian corals.

Nguyen-Kim H, Bouvier T, Bouvier C, Doan-Nhu H, Nguyen-Ngoc L, Rochelle-Newall E, Baudoux AC, Desnues C, Reynaud S, Ferrier-Pages C, Bettarel Y.

Environ Microbiol Rep. 2014 Dec;6(6):675-82.

PMID:
25756121
22.

Absence of giant blood Marseille-like virus DNA detection by polymerase chain reaction in plasma from healthy US blood donors and serum from multiply transfused patients from Cameroon.

Phan TG, Desnues C, Switzer WM, Djoko CF, Schneider BS, Deng X, Delwart E.

Transfusion. 2015 Jun;55(6):1256-62. doi: 10.1111/trf.12997. Epub 2015 Feb 2.

PMID:
25645088
23.

Reply to Sauvage et al.

Desnues C, Raoult D.

J Infect Dis. 2014 Dec 15;210(12):2018-9. doi: 10.1093/infdis/jiu457. Epub 2014 Sep 28. No abstract available.

24.

Viral metagenomics on animals as a tool for the detection of zoonoses prior to human infection?

Temmam S, Davoust B, Berenger JM, Raoult D, Desnues C.

Int J Mol Sci. 2014 Jun 10;15(6):10377-97. doi: 10.3390/ijms150610377. Review.

25.

Viral communities associated with human pericardial fluids in idiopathic pericarditis.

Fancello L, Monteil S, Popgeorgiev N, Rivet R, Gouriet F, Fournier PE, Raoult D, Desnues C.

PLoS One. 2014 Apr 1;9(4):e93367. doi: 10.1371/journal.pone.0093367. eCollection 2014.

26.

Viruses in a 14th-century coprolite.

Appelt S, Fancello L, Le Bailly M, Raoult D, Drancourt M, Desnues C.

Appl Environ Microbiol. 2014 May;80(9):2648-55. doi: 10.1128/AEM.03242-13. Epub 2014 Feb 7.

27.

Non-contiguous finished genome sequence and description of Halopiger djelfamassiliensis sp. nov.

Hassani II, Robert C, Michelle C, Raoult D, Hacène H, Desnues C.

Stand Genomic Sci. 2013 Oct 5;9(1):160-74. doi: 10.4056/sigs.4578289. eCollection 2013 Oct 16.

28.

Marseillevirus prevalence in multitransfused patients suggests blood transmission.

Popgeorgiev N, Colson P, Thuret I, Chiarioni J, Gallian P, Raoult D, Desnues C.

J Clin Virol. 2013 Dec;58(4):722-5. doi: 10.1016/j.jcv.2013.10.001. Epub 2013 Oct 15.

PMID:
24183312
29.

Describing the silent human virome with an emphasis on giant viruses.

Popgeorgiev N, Temmam S, Raoult D, Desnues C.

Intervirology. 2013;56(6):395-412. doi: 10.1159/000354561. Epub 2013 Oct 17. Review.

30.

Marseillevirus adenitis in an 11-month-old child.

Popgeorgiev N, Michel G, Lepidi H, Raoult D, Desnues C.

J Clin Microbiol. 2013 Dec;51(12):4102-5. doi: 10.1128/JCM.01918-13. Epub 2013 Oct 2.

31.

Marseillevirus-like virus recovered from blood donated by asymptomatic humans.

Popgeorgiev N, Boyer M, Fancello L, Monteil S, Robert C, Rivet R, Nappez C, Azza S, Chiaroni J, Raoult D, Desnues C.

J Infect Dis. 2013 Oct 1;208(7):1042-50. doi: 10.1093/infdis/jit292. Epub 2013 Jul 2.

PMID:
23821720
32.

Evidence of the megavirome in humans.

Colson P, Fancello L, Gimenez G, Armougom F, Desnues C, Fournous G, Yoosuf N, Million M, La Scola B, Raoult D.

J Clin Virol. 2013 Jul;57(3):191-200. doi: 10.1016/j.jcv.2013.03.018. Epub 2013 May 8.

PMID:
23664726
33.

Provirophages and transpovirons as the diverse mobilome of giant viruses.

Desnues C, La Scola B, Yutin N, Fournous G, Robert C, Azza S, Jardot P, Monteil S, Campocasso A, Koonin EV, Raoult D.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):18078-83. doi: 10.1073/pnas.1208835109. Epub 2012 Oct 15.

34.

Computational tools for viral metagenomics and their application in clinical research.

Fancello L, Raoult D, Desnues C.

Virology. 2012 Dec 20;434(2):162-74. doi: 10.1016/j.virol.2012.09.025. Epub 2012 Oct 11. Review.

35.

Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara.

Fancello L, Trape S, Robert C, Boyer M, Popgeorgiev N, Raoult D, Desnues C.

ISME J. 2013 Feb;7(2):359-69. doi: 10.1038/ismej.2012.101. Epub 2012 Oct 4.

36.

Acanthamoeba polyphaga mimivirus virophage seroconversion in travelers returning from Laos.

Parola P, Renvoisé A, Botelho-Nevers E, La Scola B, Desnues C, Raoult D.

Emerg Infect Dis. 2012 Sep;18(9):1500-2. doi: 10.3201/eid1809.120099.

37.

Sputnik, a virophage infecting the viral domain of life.

Desnues C, Boyer M, Raoult D.

Adv Virus Res. 2012;82:63-89. doi: 10.1016/B978-0-12-394621-8.00013-3. Review.

PMID:
22420851
38.

Virophages question the existence of satellites.

Desnues C, Raoult D.

Nat Rev Microbiol. 2012 Feb 16;10(3):234; author reply 234. doi: 10.1038/nrmicro2676-c3. No abstract available.

PMID:
22337169
39.

Bacteriophages and diffusion of genes encoding antimicrobial resistance in cystic fibrosis sputum microbiota.

Fancello L, Desnues C, Raoult D, Rolain JM.

J Antimicrob Chemother. 2011 Nov;66(11):2448-54. doi: 10.1093/jac/dkr315. Epub 2011 Aug 4.

PMID:
21816767
40.

Bacteriophages as vehicles of the resistome in cystic fibrosis.

Rolain JM, Fancello L, Desnues C, Raoult D.

J Antimicrob Chemother. 2011 Nov;66(11):2444-7. doi: 10.1093/jac/dkr318. Epub 2011 Aug 4. Review.

PMID:
21816766
41.

Mimivirus shows dramatic genome reduction after intraamoebal culture.

Boyer M, Azza S, Barrassi L, Klose T, Campocasso A, Pagnier I, Fournous G, Borg A, Robert C, Zhang X, Desnues C, Henrissat B, Rossmann MG, La Scola B, Raoult D.

Proc Natl Acad Sci U S A. 2011 Jun 21;108(25):10296-301. doi: 10.1073/pnas.1101118108. Epub 2011 Jun 6. Erratum in: Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):17234.

42.

Inside the lifestyle of the virophage.

Desnues C, Raoult D.

Intervirology. 2010;53(5):293-303. doi: 10.1159/000312914. Epub 2010 Jun 15.

43.

Pepper mild mottle virus, a plant virus associated with specific immune responses, Fever, abdominal pains, and pruritus in humans.

Colson P, Richet H, Desnues C, Balique F, Moal V, Grob JJ, Berbis P, Lecoq H, Harlé JR, Berland Y, Raoult D.

PLoS One. 2010 Apr 6;5(4):e10041. doi: 10.1371/journal.pone.0010041.

44.

Viral and microbial community dynamics in four aquatic environments.

Rodriguez-Brito B, Li L, Wegley L, Furlan M, Angly F, Breitbart M, Buchanan J, Desnues C, Dinsdale E, Edwards R, Felts B, Haynes M, Liu H, Lipson D, Mahaffy J, Martin-Cuadrado AB, Mira A, Nulton J, Pasić L, Rayhawk S, Rodriguez-Mueller J, Rodriguez-Valera F, Salamon P, Srinagesh S, Thingstad TF, Tran T, Thurber RV, Willner D, Youle M, Rohwer F.

ISME J. 2010 Jun;4(6):739-51. doi: 10.1038/ismej.2010.1. Epub 2010 Feb 11.

PMID:
20147985
45.

The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.

Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, Antonopoulos DA, Barott K, Cottrell MT, Desnues C, Dinsdale EA, Furlan M, Haynes M, Henn MR, Hu Y, Kirchman DL, McDole T, McPherson JD, Meyer F, Miller RM, Mundt E, Naviaux RK, Rodriguez-Mueller B, Stevens R, Wegley L, Zhang L, Zhu B, Rohwer F.

PLoS Comput Biol. 2009 Dec;5(12):e1000593. doi: 10.1371/journal.pcbi.1000593. Epub 2009 Dec 11.

46.

Metagenomic analysis of stressed coral holobionts.

Vega Thurber R, Willner-Hall D, Rodriguez-Mueller B, Desnues C, Edwards RA, Angly F, Dinsdale E, Kelly L, Rohwer F.

Environ Microbiol. 2009 Aug;11(8):2148-63. doi: 10.1111/j.1462-2920.2009.01935.x. Epub 2009 Apr 22.

PMID:
19397678
47.

Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa.

Vega Thurber RL, Barott KL, Hall D, Liu H, Rodriguez-Mueller B, Desnues C, Edwards RA, Haynes M, Angly FE, Wegley L, Rohwer FL.

Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18413-8. doi: 10.1073/pnas.0808985105. Epub 2008 Nov 18.

48.

The virophage as a unique parasite of the giant mimivirus.

La Scola B, Desnues C, Pagnier I, Robert C, Barrassi L, Fournous G, Merchat M, Suzan-Monti M, Forterre P, Koonin E, Raoult D.

Nature. 2008 Sep 4;455(7209):100-4. doi: 10.1038/nature07218.

PMID:
18690211
49.

Functional metagenomic profiling of nine biomes.

Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, Paul J, Brito BR, Ruan Y, Swan BK, Stevens R, Valentine DL, Thurber RV, Wegley L, White BA, Rohwer F.

Nature. 2008 Apr 3;452(7187):629-32. doi: 10.1038/nature06810. Epub 2008 Mar 12. Erratum in: Nature. 2008 Oct 9;455(7214):830.

PMID:
18337718
50.

Biodiversity and biogeography of phages in modern stromatolites and thrombolites.

Desnues C, Rodriguez-Brito B, Rayhawk S, Kelley S, Tran T, Haynes M, Liu H, Furlan M, Wegley L, Chau B, Ruan Y, Hall D, Angly FE, Edwards RA, Li L, Thurber RV, Reid RP, Siefert J, Souza V, Valentine DL, Swan BK, Breitbart M, Rohwer F.

Nature. 2008 Mar 20;452(7185):340-3. doi: 10.1038/nature06735. Epub 2008 Mar 2.

PMID:
18311127

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