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Items: 28

1.

Personalised medicine in 2012: editorial to the special issue of New Biotechnology on "molecular diagnostics & personalised medicine".

Desiere F, Romano Spica V.

N Biotechnol. 2012 Sep 15;29(6):611-2. doi: 10.1016/j.nbt.2012.03.010. Epub 2012 Apr 5.

PMID:
22504736
2.

Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas.

King NL, Deutsch EW, Ranish JA, Nesvizhskii AI, Eddes JS, Mallick P, Eng J, Desiere F, Flory M, Martin DB, Kim B, Lee H, Raught B, Aebersold R.

Genome Biol. 2006;7(11):R106.

3.

The PeptideAtlas project.

Desiere F, Deutsch EW, King NL, Nesvizhskii AI, Mallick P, Eng J, Chen S, Eddes J, Loevenich SN, Aebersold R.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D655-8.

4.

Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.

Desiere F, Deutsch EW, Nesvizhskii AI, Mallick P, King NL, Eng JK, Aderem A, Boyle R, Brunner E, Donohoe S, Fausto N, Hafen E, Hood L, Katze MG, Kennedy KA, Kregenow F, Lee H, Lin B, Martin D, Ranish JA, Rawlings DJ, Samelson LE, Shiio Y, Watts JD, Wollscheid B, Wright ME, Yan W, Yang L, Yi EC, Zhang H, Aebersold R.

Genome Biol. 2005;6(1):R9. Epub 2004 Dec 10.

5.

The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content.

Boekhorst J, Siezen RJ, Zwahlen MC, Vilanova D, Pridmore RD, Mercenier A, Kleerebezem M, de Vos WM, Brüssow H, Desiere F.

Microbiology. 2004 Nov;150(Pt 11):3601-11.

PMID:
15528649
6.
7.

L-alanine auxotrophy of Lactobacillus johnsonii as demonstrated by physiological, genomic, and gene complementation approaches.

van der Kaaij H, Desiere F, Mollet B, Germond JE.

Appl Environ Microbiol. 2004 Mar;70(3):1869-73.

8.

The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533.

Pridmore RD, Berger B, Desiere F, Vilanova D, Barretto C, Pittet AC, Zwahlen MC, Rouvet M, Altermann E, Barrangou R, Mollet B, Mercenier A, Klaenhammer T, Arigoni F, Schell MA.

Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2512-7.

9.

Genome analysis of an inducible prophage and prophage remnants integrated in the Streptococcus pyogenes strain SF370.

Canchaya C, Desiere F, McShan WM, Ferretti JJ, Parkhill J, Brüssow H.

Virology. 2002 Oct 25;302(2):245-58.

10.

The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.

Schell MA, Karmirantzou M, Snel B, Vilanova D, Berger B, Pessi G, Zwahlen MC, Desiere F, Bork P, Delley M, Pridmore RD, Arigoni F.

Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14422-7. Epub 2002 Oct 15. Erratum in: Proc Natl Acad Sci U S A. 2005 Jun 28;102(26):9430.

11.

The dilemma of phage taxonomy illustrated by comparative genomics of Sfi21-like Siphoviridae in lactic acid bacteria.

Proux C, van Sinderen D, Suarez J, Garcia P, Ladero V, Fitzgerald GF, Desiere F, Brüssow H.

J Bacteriol. 2002 Nov;184(21):6026-36.

12.

Comparative genomics of phages and prophages in lactic acid bacteria.

Desiere F, Lucchini S, Canchaya C, Ventura M, Brüssow H.

Antonie Van Leeuwenhoek. 2002 Aug;82(1-4):73-91. Review.

PMID:
12369206
14.

Comparative genomics of lactococcal phages: insight from the complete genome sequence of Lactococcus lactis phage BK5-T.

Desiere F, Mahanivong C, Hillier AJ, Chandry PS, Davidson BE, Brüssow H.

Virology. 2001 May 10;283(2):240-52.

15.

Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages.

Brüssow H, Desiere F.

Mol Microbiol. 2001 Jan;39(2):213-22. Review.

16.

Comparative genomics of the late gene cluster from Lactobacillus phages.

Desiere F, Pridmore RD, Brüssow H.

Virology. 2000 Sep 30;275(2):294-305.

17.
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22.

Molecular ecology and evolution of Streptococcus thermophilus bacteriophages--a review.

Brüssow H, Bruttin A, Desiere F, Lucchini S, Foley S.

Virus Genes. 1998;16(1):95-109. Review.

PMID:
9562894
25.

A new 4-nitrotoluene degradation pathway in a Mycobacterium strain.

Spiess T, Desiere F, Fischer P, Spain JC, Knackmuss HJ, Lenke H.

Appl Environ Microbiol. 1998 Feb;64(2):446-52.

26.
27.

Molecular ecology of Streptococcus thermophilus bacteriophage infections in a cheese factory.

Bruttin A, Desiere F, d'Amico N, Guérin JP, Sidoti J, Huni B, Lucchini S, Brüssow H.

Appl Environ Microbiol. 1997 Aug;63(8):3144-50.

28.

Characterization of the lysogeny DNA module from the temperate Streptococcus thermophilus bacteriophage phi Sfi21.

Bruttin A, Desiere F, Lucchini S, Foley S, Brüssow H.

Virology. 1997 Jun 23;233(1):136-48.

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