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Items: 27

1.

Single-Cell Analysis of Crohn's Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy.

Martin JC, Chang C, Boschetti G, Ungaro R, Giri M, Grout JA, Gettler K, Chuang LS, Nayar S, Greenstein AJ, Dubinsky M, Walker L, Leader A, Fine JS, Whitehurst CE, Mbow ML, Kugathasan S, Denson LA, Hyams JS, Friedman JR, Desai PT, Ko HM, Laface I, Akturk G, Schadt EE, Salmon H, Gnjatic S, Rahman AH, Merad M, Cho JH, Kenigsberg E.

Cell. 2019 Sep 5;178(6):1493-1508.e20. doi: 10.1016/j.cell.2019.08.008. Epub 2019 Aug 29.

PMID:
31474370
2.

Genome Sequence of Pigmented Siderophore-Producing Strain Serratia marcescens SM6.

Khilyas IV, Tursunov KA, Shirshikova TV, Kamaletdinova LK, Matrosova LE, Desai PT, McClelland M, Bogomolnaya LM.

Microbiol Resour Announc. 2019 May 2;8(18). pii: e00247-19. doi: 10.1128/MRA.00247-19.

3.

Author Correction: EZH2 inhibition sensitizes BRG1 and EGFR mutant lung tumours to TopoII inhibitors.

Fillmore CM, Xu C, Desai PT, Berry JM, Rowbotham SP, Lin YJ, Zhang H, Marquez VE, Hammerman PS, Wong KK, Kim CF.

Nature. 2018 Nov;563(7732):E27. doi: 10.1038/s41586-018-0580-6.

PMID:
30250255
4.

Whole Cell Cross-Linking to Discover Host-Microbe Protein Cognate Receptor/Ligand Pairs.

Weimer BC, Chen P, Desai PT, Chen D, Shah J.

Front Microbiol. 2018 Jul 19;9:1585. doi: 10.3389/fmicb.2018.01585. eCollection 2018.

5.

Draft Genome Sequence of Salmonella enterica subsp. diarizonae Serovar 61:k:1,5,(7) Strain CRJJGF_00165 (Phylum Gammaproteobacteria).

Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Barrett JB, Frye JG.

Genome Announc. 2016 Nov 23;4(6). pii: e01322-16. doi: 10.1128/genomeA.01322-16.

6.

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Orion Strain CRJJGF_00093 (Phylum Gammaproteobacteria).

Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG.

Genome Announc. 2016 Sep 29;4(5). pii: e01063-16. doi: 10.1128/genomeA.01063-16.

7.

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Bardo Strain CRJJGF_00099 (Phylum Gammaproteobacteria).

Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG.

Genome Announc. 2016 Sep 15;4(5). pii: e00964-16. doi: 10.1128/genomeA.00964-16.

8.

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Blockley Strain CRJJGF_00147 (Phylum Gammaproteobacteria).

Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG.

Genome Announc. 2016 Sep 8;4(5). pii: e00954-16. doi: 10.1128/genomeA.00954-16.

9.

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Putten Strain CRJJGF_00159 (Phylum Gammaproteobacteria).

Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McCleland M, Hiott LM, Humayoun SB, Frye JG.

Genome Announc. 2016 Sep 1;4(5). pii: e00895-16. doi: 10.1128/genomeA.00895-16.

10.

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Widemarsh Strain CRJJGF_00058 (Phylum Gammaproteobacteria).

Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG.

Genome Announc. 2016 Jul 14;4(4). pii: e00604-16. doi: 10.1128/genomeA.00604-16.

11.

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Lille Strain CRJJGF_000101 (Phylum Gammaproteobacteria).

Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG.

Genome Announc. 2016 Jul 14;4(4). pii: e00603-16. doi: 10.1128/genomeA.00603-16.

12.

Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Kiambu Strain CRJJGF_00061 (Phylum Gammaproteobacteria).

Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG.

Genome Announc. 2016 Jul 7;4(4). pii: e00588-16. doi: 10.1128/genomeA.00588-16.

13.

Solid tumors provide niche-specific conditions that lead to preferential growth of Salmonella.

Silva-Valenzuela CA, Desai PT, Molina-Quiroz RC, Pezoa D, Zhang Y, Porwollik S, Zhao M, Hoffman RM, Contreras I, Santiviago CA, McClelland M.

Oncotarget. 2016 Jun 7;7(23):35169-80. doi: 10.18632/oncotarget.9071.

14.

Reply to Yue.

McClelland M, Marzel A, Desai PT, Gal-Mor O.

Clin Infect Dis. 2016 May 15;62(10):1326-7. doi: 10.1093/cid/ciw137. Epub 2016 Mar 14. No abstract available.

PMID:
26980876
15.

Development of the Intestinal RNA Virus Community of Healthy Broiler Chickens.

Shah JD, Desai PT, Zhang Y, Scharber SK, Baller J, Xing ZS, Cardona CJ.

PLoS One. 2016 Feb 25;11(2):e0150094. doi: 10.1371/journal.pone.0150094. eCollection 2016.

16.

Persistent Infections by Nontyphoidal Salmonella in Humans: Epidemiology and Genetics.

Marzel A, Desai PT, Goren A, Schorr YI, Nissan I, Porwollik S, Valinsky L, McClelland M, Rahav G, Gal-Mor O.

Clin Infect Dis. 2016 Apr 1;62(7):879-886. doi: 10.1093/cid/civ1221. Epub 2016 Jan 5.

17.

EZH2 inhibition sensitizes BRG1 and EGFR mutant lung tumours to TopoII inhibitors.

Fillmore CM, Xu C, Desai PT, Berry JM, Rowbotham SP, Lin YJ, Zhang H, Marquez VE, Hammerman PS, Wong KK, Kim CF.

Nature. 2015 Apr 9;520(7546):239-42. doi: 10.1038/nature14122. Epub 2015 Jan 28. Erratum in: Nature. 2018 Nov;563(7732):E27.

18.

Genetic mechanisms underlying the pathogenicity of cold-stressed Salmonella enterica serovar typhimurium in cultured intestinal epithelial cells.

Shah J, Desai PT, Weimer BC.

Appl Environ Microbiol. 2014 Nov;80(22):6943-53. doi: 10.1128/AEM.01994-14. Epub 2014 Sep 5.

19.

Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages.

Deng X, Desai PT, den Bakker HC, Mikoleit M, Tolar B, Trees E, Hendriksen RS, Frye JG, Porwollik S, Weimer BC, Wiedmann M, Weinstock GM, Fields PI, McClelland M.

Emerg Infect Dis. 2014 Sep;20(9):1481-9. doi: 10.3201/eid2009.131095.

20.

Integrative analysis of Salmonellosis in Israel reveals association of Salmonella enterica Serovar 9,12:l,v:- with extraintestinal infections, dissemination of endemic S. enterica Serovar Typhimurium DT104 biotypes, and severe underreporting of outbreaks.

Marzel A, Desai PT, Nissan I, Schorr YI, Suez J, Valinsky L, Reisfeld A, Agmon V, Guard J, McClelland M, Rahav G, Gal-Mor O.

J Clin Microbiol. 2014 Jun;52(6):2078-88. doi: 10.1128/JCM.00399-14. Epub 2014 Apr 9.

21.

Preadaptation to cold stress in Salmonella enterica serovar Typhimurium increases survival during subsequent acid stress exposure.

Shah J, Desai PT, Chen D, Stevens JR, Weimer BC.

Appl Environ Microbiol. 2013 Dec;79(23):7281-9. doi: 10.1128/AEM.02621-13. Epub 2013 Sep 20.

22.

Probing the ArcA regulon under aerobic/ROS conditions in Salmonella enterica serovar Typhimurium.

Morales EH, Collao B, Desai PT, Calderón IL, Gil F, Luraschi R, Porwollik S, McClelland M, Saavedra CP.

BMC Genomics. 2013 Sep 17;14:626. doi: 10.1186/1471-2164-14-626.

23.

Virulence gene profiling and pathogenicity characterization of non-typhoidal Salmonella accounted for invasive disease in humans.

Suez J, Porwollik S, Dagan A, Marzel A, Schorr YI, Desai PT, Agmon V, McClelland M, Rahav G, Gal-Mor O.

PLoS One. 2013;8(3):e58449. doi: 10.1371/journal.pone.0058449. Epub 2013 Mar 7.

24.

Evolutionary Genomics of Salmonella enterica Subspecies.

Desai PT, Porwollik S, Long F, Cheng P, Wollam A, Bhonagiri-Palsikar V, Hallsworth-Pepin K, Clifton SW, Weinstock GM, McClelland M.

MBio. 2013 Mar 5;4(2). pii: e00579-12. doi: 10.1128/mBio.00579-12. Erratum in: MBio. 2013;4(2):e00198-13. Bhonagiri-Palsikar, Veena [added]; Hallsworth-Pepin, Kymberlie [added].

25.

Consumption of lysozyme-rich milk can alter microbial fecal populations.

Maga EA, Desai PT, Weimer BC, Dao N, Kültz D, Murray JD.

Appl Environ Microbiol. 2012 Sep;78(17):6153-60. doi: 10.1128/AEM.00956-12. Epub 2012 Jun 29.

26.

Virulence of 32 Salmonella strains in mice.

Swearingen MC, Porwollik S, Desai PT, McClelland M, Ahmer BM.

PLoS One. 2012;7(4):e36043. doi: 10.1371/journal.pone.0036043. Epub 2012 Apr 27.

27.

Solid-phase capture of pathogenic bacteria by using gangliosides and detection with real-time PCR.

Desai PT, Walsh MK, Weimer BC.

Appl Environ Microbiol. 2008 Apr;74(7):2254-8. doi: 10.1128/AEM.02601-07. Epub 2008 Feb 8.

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